mRNA_Ecto-sp9_F_contig1038.371.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1038.371.1
Unique NamemRNA_Ecto-sp9_F_contig1038.371.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1038.371.1 vs.
Match: Peroxisomal (membrane protein PEX16 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC96_ECTSI)

HSP 1 Score: 917 bits (2369), Expect = 0.000e+0
Identity = 470/489 (96.11%), Postives = 477/489 (97.55%), Query Frame = 3 
Query:   39 MDQQQHDPRTSEEGWCYANFVRHNLTAARTIETLLRYSGFFAPARFADRDLSIESGYALSSLAALAHDQILLHGQGGGLGRGGQDGGAANDDGLDGGQVHALGIAPGSSIRLDPKNRERPSSTAAVAQRMRVALAMIANVQIVVEKLAAQHGGPRRRRQAIVYLETLKALARLLLLACTKEMVMGGGSYVSGGNRRTPPRGNRNKAGAWREVDLNGARLNQAQSSEFAADHPPSPPCPPPEVYTGKRSGVKLIVPPRASVVWSGRGRSNRSGGVSRLAATASSPSCGSSRRSADGAFQNDGSSSSSFRGCASGGQGIGTGRSMEAASDESCVWRQRREAQGGQAWLMAGEVIHILRPLAYSYGCAATGERSWRPWLISLGMDAAAFACTARAGGSSGAMALLTPIGEAGSSGVPVLPYLDEEQAAELRRRKMLWFLYLTRSPAFELLAEPVSRGAAGVFEGVPILGGMAGYALNMLLYVQRHHFYTSAS 1505
            M+QQQ DPR SEEGWCYANFVRHN TAART+ETLLRYSGFFAPARFADRDLSIESGYALSSLAALAHDQIL+HGQGGGLGRGGQDGGAANDDGLDGGQVHALGIAPGSSIRLDPKNRERPSST  VAQRMRVALAMIANVQIVVEKLAAQHGGPRRR+QAIVYLETLKALARLLLLACT+EMV+GGGSYVSGGNRRTPP GNRNKAGAWREVDLNGARLNQAQSSEFA D PPSPPCPPPEVYTGKRSGVKLIVPPRASVVWSGRGRSNRSGGVSRLAATASSPSCGSSRRSADG FQND SSSSSFRGCA+GGQGIGTG SMEAASDESCVWRQRREAQGGQAWLMAGEVIHILRPLAYSYGCAATGERSWRPWLISLGMDAAAFACTARAGGSSGAMALLTPIGEAGSSGVPVLPYLDEEQAAELRRRKMLWFLYL RSPAFELLAEPVSRGAAGVFEGVPILGGMAGYALNMLLYVQRHHFYTSAS
Sbjct:    1 MEQQQRDPRASEEGWCYANFVRHNPTAARTVETLLRYSGFFAPARFADRDLSIESGYALSSLAALAHDQILIHGQGGGLGRGGQDGGAANDDGLDGGQVHALGIAPGSSIRLDPKNRERPSSTTVVAQRMRVALAMIANVQIVVEKLAAQHGGPRRRQQAIVYLETLKALARLLLLACTREMVVGGGSYVSGGNRRTPPLGNRNKAGAWREVDLNGARLNQAQSSEFAVDRPPSPPCPPPEVYTGKRSGVKLIVPPRASVVWSGRGRSNRSGGVSRLAATASSPSCGSSRRSADGVFQNDSSSSSSFRGCANGGQGIGTGGSMEAASDESCVWRQRREAQGGQAWLMAGEVIHILRPLAYSYGCAATGERSWRPWLISLGMDAAAFACTARAGGSSGAMALLTPIGEAGSSGVPVLPYLDEEQAAELRRRKMLWFLYLMRSPAFELLAEPVSRGAAGVFEGVPILGGMAGYALNMLLYVQRHHFYTSAS 489
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1038.371.1 vs.
Match: Peroxisomal (membrane protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Q5_9STRA)

HSP 1 Score: 236 bits (603), Expect = 7.610e-65
Identity = 172/472 (36.44%), Postives = 230/472 (48.73%), Query Frame = 3 
Query:   87 YANFVRHNLTAARTIETLLRYSGFFAPARFADRDLSIESGYALSSLAALAHDQILLHGQGGGLGRGGQDGGAANDDGLDGGQVHALGIAPGSSIRLDPKNRERPSSTAAVAQRMRVALAMIANVQIVVEKLAAQHGGPRRRRQAIVYLETLKALARLLLLACTKEMVMGGGSYVSGGNRRTPPRGNRNKAGAWREVDLNGARLNQAQSSEFAADHPPSPPCPPPEVYTGKRSGVKLIVPPRASVVWSGRGRSNRSGGVSRLAATASSPS---CGSSRRSADGAFQNDGSSSSSFRGCASGGQGIGTGRSMEAASDESCVWRQRREAQGGQA--------WLMAGEVIHILRPLAYSYGCAATGERSWRPWLISLGMDAAAFACTARAGGSSGAMALLTPIGEAGSSGVPVLPYLDEEQAAELRRRKMLWFLYLTRSPAFELLAEPVSRGAAGVFEGVPILGGMAGYALNMLL 1469
            Y+ FV+ N   A  +E++LRYSGF APA+F +R+L +E+GYA SSLA L HD I                                     ++ +   + R        V   +R AL ++A++++V EK+AA  GG  RRRQ I  +E  KA+ RL +LA T+EM++ GG +  G     PP   +  AG      L+   L     +E    H P P    P +Y GKR G K  +P RA        R   + G+ RL A  S+P+   C S++  +        S          GG G G G   E   D   + R RR    G+A        WL+ GE +H +RP AYS  C   GE +W PWL+S+ +D A+ ACTARA         +   G  G+ G      L  EQ AELRRRK+ W LYL R+PAFELL  P + GAAG F GVP+LGG+A YAL MLL
Sbjct:   10 YSAFVKANPGTANLLESVLRYSGFLAPAQFGERELLVEAGYAASSLAGLLHDGI-------------------------------------NAPQQQHQQRSTGGHEEGVVATLRTALVVLAHIEVVAEKVAAASGGAVRRRQLITAIEVAKAVMRLTILALTREMLLAGGHHAPG----APPLRGQTIAGRVGSRVLSTVGLGLEDRAENGTGHGPPPA---PVMYQGKRCGRKYALPARAQA------RHGSAPGL-RLGANGSAPALNGCSSAQNGSHTDMYGAASCCGLQHAACGGGHGDGAGWMAEEDEDGE-LERHRRWLHAGRAPAPPPPKAWLLLGEGLHAIRPAAYSAACGRLGEAAWAPWLLSMSVDVASRACTARA---------VEVRGGRGNGGA-----LTPEQRAELRRRKVQWVLYLLRTPAFELLLGPAATGAAGAFGGVPVLGGLASYALQMLL 415
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1038.371.1 vs.
Match: Peroxisomal (membrane protein PEX16 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I5V1_KLENI)

HSP 1 Score: 99.4 bits (246), Expect = 5.220e-18
Identity = 56/144 (38.89%), Postives = 80/144 (55.56%), Query Frame = 3 
Query: 1074 LMAGEVIHILRPLAYSYGCAATGERSWRPWLISLGMDAAAFACTARAGGSSGAMALLTPIGEAGSSGVPVLPYLDEEQAAELRRRKMLWFLYLTRSPAFELLAEPVSRGAAGVFEGVPILGGMAGYALNMLLYVQRHHFYTSAS 1505
            L AGEV++ +RPL Y       G R W+PWL+SLG+DAA+ A  A   G           G+ G  G      L E++ +E+ RR++L  LYL RSP FE++ +P +     V   VP+LG +   AL +   VQ ++FYT+AS
Sbjct:  444 LTAGEVLYAMRPLVYVLAMRKWGARKWKPWLLSLGVDAASMALIAA--GDEVLKRDARGKGKEGEGG------LTEQERSEMARRRVLLLLYLMRSPVFEMVTKPPAEAVGRVLWPVPLLGALTSKALEIFEGVQGYYFYTAAS 579
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1038.371.1 vs.
Match: Peroxisomal (membrane protein PEX16 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AC00_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.480e-16
Identity = 56/144 (38.89%), Postives = 77/144 (53.47%), Query Frame = 3 
Query: 1077 MAGEVIHILRPLAYSYGCAATGERSWRPWLISLGMDAAAFACTARAGGSSGAMALLTPIGEAGSSGVPVLPYLDEEQAAELRRRKMLWFLYLTRSPAFELLAEPVSRGAAGVFEGVPILGGMAGYAL-NMLLYVQRHHFYTSAS 1505
            +AGEV+HILRP+ Y+  C    E+SW P+L S   +    AC++               G   S+ + V P + EE    LRRRKM   LYL R+P F    +P++   A   + VP+LG +  +A+ N L Y QR HFYTSAS
Sbjct:  192 LAGEVLHILRPVIYAILCQRKTEQSWIPFLASFSTEILGIACSSA--------------GLEHSNKLSVDPLVAEE----LRRRKMCLLLYLLRNPFFSSATQPLADNVANATKPVPLLGRLLQFAIDNGLHYYQRRHFYTSAS 317
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1038.371.1 vs.
Match: Peroxisomal (membrane protein PEX16 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U860_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.820e-16
Identity = 65/211 (30.81%), Postives = 97/211 (45.97%), Query Frame = 3 
Query:  981 QGIGTGRSMEAASDESCVWRQRREAQG---GQAWLMAGEVIHILRPLAYSY-------------GCAATGERSWRPWLISLGM-------DAAAFACTARAG------GSSGAMALLTPIGEAGSSGVPVLP-------YLDEEQAAELRRRKMLWFLYLTRSPAFELLAEPVSRGAAGVFEGVPILGGMAGYALNMLLYVQRHHFYTSAS 1505
            +G G+ R++E   +E     +R  A+    G   L+ GE++HILRP  +               G       S+  WL+  G        D ++ A  AR        G   A +L +  G    +G+               EQ  ELRRRKM W LYL RSP F+L+ EPV++    V    P++G ++ YA+ +L+++Q HHFYTS S
Sbjct:  137 EGKGSRRAIEGEWEEVSTNLERESAEARSEGDGLLLLGEILHILRPFLFCVIERLVLRRQLRRLGKGEGPPNSYGSWLLLAGSFWMDFLSDRSSGAALARREVDLLELGVRSAESLRSTTGPRTGTGILTREASLTRAMMRFAEQKEELRRRKMQWLLYLLRSPLFQLICEPVAKTTDKVLGRAPLIGSLSNYAMQLLMHIQSHHFYTSGS 347
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1038.371.1 vs.
Match: Peroxisomal (membrane protein PEX16 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8Q0_PYTIN)

HSP 1 Score: 87.4 bits (215), Expect = 5.520e-15
Identity = 51/145 (35.17%), Postives = 75/145 (51.72%), Query Frame = 3 
Query: 1074 LMAGEVIHILRPLAYSYGCAATGERSWRPWLISLGMDAAAFACTARAGGSSGAMALLTPIGEAGSSGVPVLPYLDEEQAAELRRRKMLWFLYLTRSPAFELLAEPVSRGAAGVFEGVPILGGMAGYALNMLL-YVQRHHFYTSAS 1505
            L+ GE++HI+RP+A++      GE SW P L+++ +++A+F CT  +  S GA    T I               +  A EL  RKM   LYL R P +  + +PV+    GV + VP+LG +       +L Y    HFYTSAS
Sbjct:  195 LLTGELLHIIRPVAFAMLRRRRGETSWLPALVAVLIESASFVCTTSSSLSEGATLSTTGIS-------------SKRAAEELASRKMALLLYLLRDPVYASVTKPVTEAVCGVTDYVPLLGRLVRLVSTGILDYYHNFHFYTSAS 326
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1038.371.1 vs.
Match: Peroxisomal (membrane protein PEX16 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RB81_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 2.690e-14
Identity = 60/175 (34.29%), Postives = 82/175 (46.86%), Query Frame = 3 
Query: 1032 VWRQRREAQGGQAWLMAGEVIHILRPLAYSYGCAATGERSWRPWLISLGMDAAAFACTARAGGSSGAMALLTPIGEAGSSGVPVLPYLDE-----------------EQAAELRRRKMLWFLYLTRSPAFELLAEPVSRGAAGVFEGVPILGGMAGYALNMLLYVQRHHFYTSAS 1505
            VW +R   +     L+ GEV+H+ RP+ Y +     G RSWRPWLISL +DAA+              A L  +G   S+  P   Y +                   +  E +RRK+   LYL RSP FE   +PV     G    VP++G +   AL +L+ VQR+  YTSAS
Sbjct:  232 VWSRRAATE----LLVLGEVMHLARPMVYCWLLRRYGVRSWRPWLISLLIDAAS--------------ARLLSLGNCLSNPRPSSVYKERFTSLQYSRSLSAISWSSVEVKERQRRKLALILYLIRSPCFESATKPVLYNLNGFAGRVPLIGFVTEKALEILIGVQRYFTYTSAS 388
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1038.371.1 vs.
Match: Peroxisomal (membrane protein PEX16 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S6T6_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 3.760e-14
Identity = 60/164 (36.59%), Postives = 83/164 (50.61%), Query Frame = 3 
Query: 1032 VWRQRREAQGGQAWLMAGEVIHILRPLAYSYGCAATGERSWRPWLISLGMDAAAFA------CTARAGGSSGAMALLTPIGEAGSSGVPVLPYLDEEQAAELRRRKMLWFLYLTRSPAFELLAEPVSRGAAGVFEGVPILGGMAGYALNMLLYVQRHHFYTSAS 1505
            VW +R   +     L+ GEV+H+ RP+ Y +     G RSWRPWLISL +DAA+        C +    SS      T +    S  +  + +   E   E +RRK+   LYL RSP FE   +PV     G    VP++G +   AL +L+ VQR+  YTSAS
Sbjct:  273 VWSRRAATE----LLVLGEVMHLARPMVYCWLLRRYGVRSWRPWLISLLIDAASARLLSLGNCLSNPRXSSVYKERFTSLQY--SRSLSAISWSSVE-VKERQRRKLALILYLIRSPCFESATKPVLYNLNGFAGRVPLIGFVTEKALEILIGVQRYFTYTSAS 429
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1038.371.1 vs.
Match: Peroxisomal (membrane protein PEX16 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=U5DG66_AMBTC)

HSP 1 Score: 78.2 bits (191), Expect = 2.820e-13
Identity = 45/143 (31.47%), Postives = 68/143 (47.55%), Query Frame = 3 
Query: 1077 MAGEVIHILRPLAYSYGCAATGERSWRPWLISLGMDAAAFACTARAGGSSGAMALLTPIGEAGSSGVPVLPYLDEEQAAELRRRKMLWFLYLTRSPAFELLAEPVSRGAAGVFEGVPILGGMAGYALNMLLYVQRHHFYTSAS 1505
            + GEV+ I RPL Y       G RSW+PW++SL +D AA             M +L+ +   G   +     L  E+  EL+RRK+LW LYL R P F   +             +P++G +    + +++  Q  + YTSAS
Sbjct:   28 LLGEVLFITRPLVYVLFIRKHGVRSWKPWMLSLAVDFAA-------------MGILSFVTNGGKHHI-----LSSEETNELKRRKLLWALYLLRDPFFSKYSRCRIENTEKYLNPIPLVGFLTAKFVELIIGAQTRYTYTSAS 152
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1038.371.1 vs.
Match: Peroxisomal (membrane protein PEX16 n=27 Tax=Panicoideae TaxID=147369 RepID=K3YTE2_SETIT)

HSP 1 Score: 81.3 bits (199), Expect = 1.040e-12
Identity = 51/152 (33.55%), Postives = 72/152 (47.37%), Query Frame = 3 
Query: 1053 AQGGQAWLMA-GEVIHILRPLAYSYGCAATGERSWRPWLISLGMDAAAFACTARAGGSSGAMALLTPIGEAGSSGVPVLPYLDEEQAAELRRRKMLWFLYLTRSPAFELLAEPVSRGAAGVFEGVPILGGMAGYALNMLLYVQRHHFYTSAS 1505
            A+GG   L   GEV+HI RPL Y       G RSW PWL+SL ++  +    + A          T +   G      +  L   +  EL+RRKM+W LY+ R P F    +   + A  V   VP++G + G  + +L  VQ  + YTS S
Sbjct:  237 AKGGTGRLFVLGEVVHIFRPLVYVLLIRKFGIRSWTPWLVSLAVELTSLGIHSHA----------TDLNHRGGK----VHQLSSAERDELKRRKMMWALYVMRDPFFTSYTKRHLQKAEQVLNPVPLIGFLTGKLMELLEGVQTRYTYTSGS 374
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1038.371.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Peroxisomal0.000e+096.11membrane protein PEX16 n=2 Tax=Ectocarpus TaxID=28... [more]
Peroxisomal7.610e-6536.44membrane protein-domain-containing protein n=1 Tax... [more]
Peroxisomal5.220e-1838.89membrane protein PEX16 n=1 Tax=Klebsormidium niten... [more]
Peroxisomal2.480e-1638.89membrane protein PEX16 n=1 Tax=Thraustotheca clava... [more]
Peroxisomal3.820e-1630.81membrane protein PEX16 n=1 Tax=Pinguiococcus pyren... [more]
Peroxisomal5.520e-1535.17membrane protein PEX16 n=1 Tax=Pythium insidiosum ... [more]
Peroxisomal2.690e-1434.29membrane protein PEX16 n=1 Tax=Tetraselmis sp. GSL... [more]
Peroxisomal3.760e-1436.59membrane protein PEX16 (Fragment) n=1 Tax=Tetrasel... [more]
Peroxisomal2.820e-1331.47membrane protein PEX16 n=1 Tax=Amborella trichopod... [more]
Peroxisomal1.040e-1233.55membrane protein PEX16 n=27 Tax=Panicoideae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1038contigEcto-sp9_F_contig1038:9198..12669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score920.6
Seed ortholog evalue3e-265
Seed eggNOG ortholog2880.D8LC96
Preferred namePEX16
KEGG koko:K13335
KEGG TC3.A.20.1,9.A.17.1
KEGG Pathwayko04146,map04146
GOsGO:0000003,GO:0000038,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0005783,GO:0005789,GO:0006082,GO:0006605,GO:0006612,GO:0006625,GO:0006629,GO:0006631,GO:0006633,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007276,GO:0007283,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009062,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016053,GO:0016054,GO:0016557,GO:0016558,GO:0017038,GO:0019752,GO:0019953,GO:0022406,GO:0022412,GO:0022414,GO:0022615,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0031984,GO:0032501,GO:0032504,GO:0032581,GO:0032787,GO:0033036,GO:0033365,GO:0034613,GO:0042175,GO:0042579,GO:0042760,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043574,GO:0044085,GO:0044091,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044743,GO:0045046,GO:0045184,GO:0046394,GO:0046395,GO:0046907,GO:0048137,GO:0048232,GO:0048609,GO:0051179,GO:0051234,GO:0051301,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072330,GO:0072594,GO:0072657,GO:0072662,GO:0072663,GO:0090150,GO:0098588,GO:0098805,GO:0098827,GO:0106101,GO:1901575,GO:1901576
EggNOG free text desc.ER-dependent peroxisome localization
EggNOG OGsKOG4546@1,KOG4546@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeroxisome membrane protein, Pex16
Ec32 orthologEc-14_005580.1
Exons4
Model size2153
Cds size1470
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1038.371.1prot_Ecto-sp9_F_contig1038.371.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1038 9843..12631 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928245.7614424-UTR-Ecto-sp9_F_contig1038:9197..98421622928245.7614424-UTR-Ecto-sp9_F_contig1038:9197..9842Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1038 9198..9842 -
1692277807.3839653-UTR-Ecto-sp9_F_contig1038:9197..98421692277807.3839653-UTR-Ecto-sp9_F_contig1038:9197..9842Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1038 9198..9842 -
1622928245.875917-UTR-Ecto-sp9_F_contig1038:12631..126691622928245.875917-UTR-Ecto-sp9_F_contig1038:12631..12669Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1038 12632..12669 -
1692277807.4275508-UTR-Ecto-sp9_F_contig1038:12631..126691692277807.4275508-UTR-Ecto-sp9_F_contig1038:12631..12669Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1038 12632..12669 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928245.7729683-CDS-Ecto-sp9_F_contig1038:9842..107481622928245.7729683-CDS-Ecto-sp9_F_contig1038:9842..10748Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1038 9843..10748 -
1692277807.3962572-CDS-Ecto-sp9_F_contig1038:9842..107481692277807.3962572-CDS-Ecto-sp9_F_contig1038:9842..10748Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1038 9843..10748 -
1622928245.7827206-CDS-Ecto-sp9_F_contig1038:11161..113751622928245.7827206-CDS-Ecto-sp9_F_contig1038:11161..11375Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1038 11162..11375 -
1692277807.404059-CDS-Ecto-sp9_F_contig1038:11161..113751692277807.404059-CDS-Ecto-sp9_F_contig1038:11161..11375Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1038 11162..11375 -
1622928245.7927701-CDS-Ecto-sp9_F_contig1038:11849..120701622928245.7927701-CDS-Ecto-sp9_F_contig1038:11849..12070Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1038 11850..12070 -
1692277807.4115548-CDS-Ecto-sp9_F_contig1038:11849..120701692277807.4115548-CDS-Ecto-sp9_F_contig1038:11849..12070Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1038 11850..12070 -
1622928245.8638024-CDS-Ecto-sp9_F_contig1038:12502..126311622928245.8638024-CDS-Ecto-sp9_F_contig1038:12502..12631Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1038 12503..12631 -
1692277807.4190187-CDS-Ecto-sp9_F_contig1038:12502..126311692277807.4190187-CDS-Ecto-sp9_F_contig1038:12502..12631Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1038 12503..12631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1038.371.1

>prot_Ecto-sp9_F_contig1038.371.1 ID=prot_Ecto-sp9_F_contig1038.371.1|Name=mRNA_Ecto-sp9_F_contig1038.371.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=490bp
MDQQQHDPRTSEEGWCYANFVRHNLTAARTIETLLRYSGFFAPARFADRD
LSIESGYALSSLAALAHDQILLHGQGGGLGRGGQDGGAANDDGLDGGQVH
ALGIAPGSSIRLDPKNRERPSSTAAVAQRMRVALAMIANVQIVVEKLAAQ
HGGPRRRRQAIVYLETLKALARLLLLACTKEMVMGGGSYVSGGNRRTPPR
GNRNKAGAWREVDLNGARLNQAQSSEFAADHPPSPPCPPPEVYTGKRSGV
KLIVPPRASVVWSGRGRSNRSGGVSRLAATASSPSCGSSRRSADGAFQND
GSSSSSFRGCASGGQGIGTGRSMEAASDESCVWRQRREAQGGQAWLMAGE
VIHILRPLAYSYGCAATGERSWRPWLISLGMDAAAFACTARAGGSSGAMA
LLTPIGEAGSSGVPVLPYLDEEQAAELRRRKMLWFLYLTRSPAFELLAEP
VSRGAAGVFEGVPILGGMAGYALNMLLYVQRHHFYTSAS*
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mRNA from alignment at Ecto-sp9_F_contig1038:9198..12669-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1038.371.1 ID=mRNA_Ecto-sp9_F_contig1038.371.1|Name=mRNA_Ecto-sp9_F_contig1038.371.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3472bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1038:9198..12669- (Ectocarpus species9 EcSCA_722f female)
CTCACGACCACGCGGTCCTGAGAGCTCCGCGACCATACATGGATCAACAG
CAGCACGACCCGAGGACTTCTGAAGAAGGATGGTGCTATGCCAATTTCGT
GCGACACAACCTAACCGCAGCACGCACAATAGAGACTCTCCTTCGATACT
CCGGCTTCTTCGCACCGGTGAGGCTCTGTACTGCTGCACTGGTACTGATG
CTGCAGTCACACGAATGCACAGAGACGTGGATGGTATATTCTATGCACAT
GCAGTTTCATCTACCACACTTCATACGCAATGATACAGGTTTGATACAGG
TTTGGTATGCGAGGAATAATCGTGCCGGCAGGGGGTGAACTGCTGTGTTC
AAAAACTGTGCACTGCTGTAGACTAAACGGCGGACGGCAGCCAGCTGTAC
AAGTAGACTAATTTTACGGACGTACAGCACTGCAGACGTTGGACTCGTCA
CCATCAATGGTAGATCTTACAAGGTCTCCAAACCCTTCCAACAAAAAAAC
CGCCATTGATCTCACCCCCCTCGCGAGCACAAATCGGTGTTACGTCTTCC
AATAATCCAATCCACCCCGCACCATTACCGCCTCACTCTCCTCCCGAAGG
CGCGCTTCGCCGACAGAGATCTTTCCATCGAGTCTGGCTATGCTCTGTCT
AGCCTTGCCGCCTTGGCGCACGACCAAATCTTGCTACACGGACAAGGAGG
AGGTCTTGGCCGTGGGGGACAGGACGGAGGGGCCGCCAACGATGATGGCC
TCGACGGTGGCCAAGTACACGCCCTCGGCATCGCGCCTGGATCAAGCATC
CGACTCGATCCCAAGAACCGGTGAGTAGAGCATACGATGTGCCAACGGTA
TACTGGGAGCAGATAATAACTGTAGCATGTCAGTTCCGAATTGAAAGGGG
GAGCATGTTGGTTTGTGTAATAGCTCATTACTGTTCACGCTTCTAACAAG
TGTTCGGAGGGCGGGGCTTCCGCGTTCCTGACGCTAGCTAGCTGCCTGGC
TTTCAAGAGTATCTAGCAAACATGCTCACAGGAAGGGCAGCATTCTCATT
GTTTGCTCTGAGAAGCGCCACGTTTCTCGAGGGACGTTTGAGCAGTCTAG
TCGAACCGAAGGTGGTATGGCACGCTGGCGTTATTTGAAGATTTTCCCGT
GTGGATCAGGGGTTCGATGCATCGGTGTCCTTCTGACTCGCTAAGCTCGA
AGTAACCCGGTGTCTGCGCCTCTTGGAACTCCGCTCCCCCCTCTCATATC
TGTTTTTTGTTTTTTTGCGACTGTTCGACTTTTCTGTTGCCCAGAGAGAG
GCCATCGTCGACGGCCGCCGTCGCCCAACGCATGCGCGTAGCCCTGGCCA
TGATCGCGAACGTGCAGATCGTGGTGGAGAAGCTGGCCGCGCAGCACGGA
GGCCCGCGAAGGAGACGACAGGCAATCGTCTACCTGGAAACGCTCAAGGC
CTTGGCCCGACTGCTGCTACTCGCGTGCACGAAGGAAATGGTCATGGGAG
GAGGCTCGGTGAGGCGCCCCTGTATTTAACCTTGGGTTTGCATGTGTGGC
AGCTCCTCTCTTATTGTGCAAACTCGAATGCGATCCCCCGGTCTGTTTTG
GTCCGCGTTGAGGTATGTAGACATTTACGTGATTGCTCGAGACCTGAGAC
GCTCGGGCGCGGCTGTTAACGGACAACCCGGAGCGCGCGTCTCTCCGTTA
TTCGGCTACGTTTTGTTGAGGATCATCACCATGGGGCTCATTTTCAACAC
AAGTGCTCGCTGATTGGTGCTTGAAAGCTGGTCCCATGGTGAAGATCTTG
GGCCAACAGATACTATGCATTCACTAGCAAAAAGTCATCCGATTTTTTAT
CCTCAATCATCCCTCGATGCACTCGTTTTCATATTCCTTTGTGCTGCACG
CGACGGCCGCTCTTGTTGTAGTACGTTTCGGGGGGAAATCGGAGGACTCC
GCCGCGCGGGAATCGGAACAAAGCCGGCGCCTGGAGAGAGGTCGACCTCA
ACGGAGCCCGATTAAATCAAGCGCAATCCTCTGAGTTCGCGGCCGACCAC
CCCCCTTCGCCTCCCTGCCCCCCCCCCGAGGTGTACACGGGAAAGCGGAG
CGGCGTGAAGCTGATCGTCCCACCGCGAGCGAGCGTGGTGTGGAGCGGGC
GAGGGCGTTCCAACCGGTCGGGCGGGGTCAGCAGGCTGGCGGCGACCGCT
TCATCCCCCTCCTGTGGCAGCTCTCGACGAAGCGCCGACGGAGCGTTTCA
GAACGATGGCAGCAGTAGTAGTAGTTTCCGGGGCTGCGCTAGCGGTGGGC
AGGGGATTGGTACGGGCAGATCGATGGAAGCGGCCAGCGATGAATCGTGC
GTGTGGCGACAACGGCGGGAGGCACAGGGAGGGCAGGCGTGGCTGATGGC
GGGAGAAGTGATCCACATCCTGCGACCGCTGGCGTACAGCTACGGCTGCG
CGGCGACGGGGGAGCGGTCCTGGCGCCCGTGGCTGATTTCTCTGGGGATG
GACGCCGCGGCCTTCGCTTGCACCGCGAGAGCAGGGGGCAGCAGCGGGGC
GATGGCCCTGTTGACTCCGATCGGAGAGGCGGGTAGCAGCGGCGTGCCGG
TGCTGCCTTACTTGGACGAGGAGCAAGCAGCCGAGCTGAGGCGCCGCAAG
ATGCTGTGGTTCCTGTACCTGACGCGCTCGCCAGCGTTTGAGCTGCTGGC
GGAGCCGGTCAGCAGAGGCGCTGCCGGTGTGTTTGAGGGGGTTCCGATTT
TGGGTGGCATGGCGGGCTACGCGTTGAATATGCTGCTGTACGTTCAGCGG
CATCACTTCTATACATCAGCGTCTTAAACTTGACTACTGCTGTTTTGCGG
AAGAGTGTGGTTTAGAGTTCAGTGACGTCTGTGTCGTCTATTTGTCTGTC
ATGTACATATGTTTCTTGTTTTTGTGGGCAGACAAAATAGATTTGTGATC
AACCCGTGCAGATTAAGTATGGATGTGACGCGTACGAACTACCAAGTAAA
TTTTTGTATCGTCATGTTTTCGCCAGGCGATTTTGAGGCCTTGTTTCGAA
TGAGGGTAGGGTCAGGCATGATGTCGCGTGCGCAAAAGTTGCGCGCCACG
TAAACAGATAACCTCTCGAACATAGCACGGGAGTATTGCCCTCGGTTCAT
CGCGAGCCCGCTCTTGTTCTTTTCCCCGCGAGGCTTTTTTATGTGTGTAG
GCGAAGCTCTCGCACTGGGATGTTTGCCAGAGAGAGCAGCGAGAAAGGAG
TTGGAATTCGTCGACGAAAAGTTGGAATTCGTCGACGAAATGGCACGATA
CTGCCGTGAGGTGCTGCTGGTAGACTTGCACACACACGGAGTTGGAGGAG
ACGGAAGAAATGTAAAGTAGTGTAGACCAAATACAATTTTCACGTCCTTC
GCCTGTTTGACGAGCAGAAATGTTGTAATAAGCGCGTGCGGGAGACATGC
GAGAGAGAAAAAAACTTTGACG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1038:9198..12669-

>mRNA_Ecto-sp9_F_contig1038.371.1 ID=mRNA_Ecto-sp9_F_contig1038.371.1|Name=mRNA_Ecto-sp9_F_contig1038.371.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2940bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1038:9198..12669- (Ectocarpus species9 EcSCA_722f female)
ATGGATCAACAGCAGCACGACCCGAGGACTTCTGAAGAAGGATGGTGCTA
TGCCAATTTCGTGCGACACAACCTAACCGCAGCACGCACAATAGAGACTC
TCCTTCGATACTCCGGCTTCTTCGCACCGATGGATCAACAGCAGCACGAC
CCGAGGACTTCTGAAGAAGGATGGTGCTATGCCAATTTCGTGCGACACAA
CCTAACCGCAGCACGCACAATAGAGACTCTCCTTCGATACTCCGGCTTCT
TCGCACCGGCGCGCTTCGCCGACAGAGATCTTTCCATCGAGTCTGGCTAT
GCTCTGTCTAGCCTTGCCGCCTTGGCGCACGACCAAATCTTGCTACACGG
ACAAGGAGGAGGTCTTGGCCGTGGGGGACAGGACGGAGGGGCCGCCAACG
ATGATGGCCTCGACGGTGGCCAAGTACACGCCCTCGGCATCGCGCCTGGA
TCAAGCATCCGACTCGATCCCAAGAACCGGCGCGCTTCGCCGACAGAGAT
CTTTCCATCGAGTCTGGCTATGCTCTGTCTAGCCTTGCCGCCTTGGCGCA
CGACCAAATCTTGCTACACGGACAAGGAGGAGGTCTTGGCCGTGGGGGAC
AGGACGGAGGGGCCGCCAACGATGATGGCCTCGACGGTGGCCAAGTACAC
GCCCTCGGCATCGCGCCTGGATCAAGCATCCGACTCGATCCCAAGAACCG
AGAGAGGCCATCGTCGACGGCCGCCGTCGCCCAACGCATGCGCGTAGCCC
TGGCCATGATCGCGAACGTGCAGATCGTGGTGGAGAAGCTGGCCGCGCAG
CACGGAGGCCCGCGAAGGAGACGACAGGCAATCGTCTACCTGGAAACGCT
CAAGGCCTTGGCCCGACTGCTGCTACTCGCGTGCACGAAGGAAATGGTCA
TGGGAGGAGGCTCGAGAGAGGCCATCGTCGACGGCCGCCGTCGCCCAACG
CATGCGCGTAGCCCTGGCCATGATCGCGAACGTGCAGATCGTGGTGGAGA
AGCTGGCCGCGCAGCACGGAGGCCCGCGAAGGAGACGACAGGCAATCGTC
TACCTGGAAACGCTCAAGGCCTTGGCCCGACTGCTGCTACTCGCGTGCAC
GAAGGAAATGGTCATGGGAGGAGGCTCGTACGTTTCGGGGGGAAATCGGA
GGACTCCGCCGCGCGGGAATCGGAACAAAGCCGGCGCCTGGAGAGAGGTC
GACCTCAACGGAGCCCGATTAAATCAAGCGCAATCCTCTGAGTTCGCGGC
CGACCACCCCCCTTCGCCTCCCTGCCCCCCCCCCGAGGTGTACACGGGAA
AGCGGAGCGGCGTGAAGCTGATCGTCCCACCGCGAGCGAGCGTGGTGTGG
AGCGGGCGAGGGCGTTCCAACCGGTCGGGCGGGGTCAGCAGGCTGGCGGC
GACCGCTTCATCCCCCTCCTGTGGCAGCTCTCGACGAAGCGCCGACGGAG
CGTTTCAGAACGATGGCAGCAGTAGTAGTAGTTTCCGGGGCTGCGCTAGC
GGTGGGCAGGGGATTGGTACGGGCAGATCGATGGAAGCGGCCAGCGATGA
ATCGTGCGTGTGGCGACAACGGCGGGAGGCACAGGGAGGGCAGGCGTGGC
TGATGGCGGGAGAAGTGATCCACATCCTGCGACCGCTGGCGTACAGCTAC
GGCTGCGCGGCGACGGGGGAGCGGTCCTGGCGCCCGTGGCTGATTTCTCT
GGGGATGGACGCCGCGGCCTTCGCTTGCACCGCGAGAGCAGGGGGCAGCA
GCGGGGCGATGGCCCTGTTGACTCCGATCGGAGAGGCGGGTAGCAGCGGC
GTGCCGGTGCTGCCTTACTTGGACGAGGAGCAAGCAGCCGAGCTGAGGCG
CCGCAAGATGCTGTGGTTCCTGTACCTGACGCGCTCGCCAGCGTTTGAGC
TGCTGGCGGAGCCGGTCAGCAGAGGCGCTGCCGGTGTGTTTGAGGGGGTT
CCGATTTTGGGTGGCATGGCGGGCTACGCGTTGAATATGCTGCTGTACGT
TCAGCGGCATCACTTCTATACATCAGCGTCTTAATACGTTTCGGGGGGAA
ATCGGAGGACTCCGCCGCGCGGGAATCGGAACAAAGCCGGCGCCTGGAGA
GAGGTCGACCTCAACGGAGCCCGATTAAATCAAGCGCAATCCTCTGAGTT
CGCGGCCGACCACCCCCCTTCGCCTCCCTGCCCCCCCCCCGAGGTGTACA
CGGGAAAGCGGAGCGGCGTGAAGCTGATCGTCCCACCGCGAGCGAGCGTG
GTGTGGAGCGGGCGAGGGCGTTCCAACCGGTCGGGCGGGGTCAGCAGGCT
GGCGGCGACCGCTTCATCCCCCTCCTGTGGCAGCTCTCGACGAAGCGCCG
ACGGAGCGTTTCAGAACGATGGCAGCAGTAGTAGTAGTTTCCGGGGCTGC
GCTAGCGGTGGGCAGGGGATTGGTACGGGCAGATCGATGGAAGCGGCCAG
CGATGAATCGTGCGTGTGGCGACAACGGCGGGAGGCACAGGGAGGGCAGG
CGTGGCTGATGGCGGGAGAAGTGATCCACATCCTGCGACCGCTGGCGTAC
AGCTACGGCTGCGCGGCGACGGGGGAGCGGTCCTGGCGCCCGTGGCTGAT
TTCTCTGGGGATGGACGCCGCGGCCTTCGCTTGCACCGCGAGAGCAGGGG
GCAGCAGCGGGGCGATGGCCCTGTTGACTCCGATCGGAGAGGCGGGTAGC
AGCGGCGTGCCGGTGCTGCCTTACTTGGACGAGGAGCAAGCAGCCGAGCT
GAGGCGCCGCAAGATGCTGTGGTTCCTGTACCTGACGCGCTCGCCAGCGT
TTGAGCTGCTGGCGGAGCCGGTCAGCAGAGGCGCTGCCGGTGTGTTTGAG
GGGGTTCCGATTTTGGGTGGCATGGCGGGCTACGCGTTGAATATGCTGCT
GTACGTTCAGCGGCATCACTTCTATACATCAGCGTCTTAA
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