mRNA_Ecto-sp9_F_contig10376.367.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10376.367.1
Unique NamemRNA_Ecto-sp9_F_contig10376.367.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10376.367.1 vs.
Match: ERD (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKU1_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 4.850e-25
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 ARRPARDHEDGDDGNARTAYLQPSLKAEPFARPELERDHQANIDFERFRGRV 156
            ARRPARDHEDGDDG+ARTAYLQPSLKAEPFARPEL+RDHQANIDFERFRGRV
Sbjct:  909 ARRPARDHEDGDDGDARTAYLQPSLKAEPFARPELDRDHQANIDFERFRGRV 960
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10376.367.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
ERD4.850e-2596.15protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10376contigEcto-sp9_F_contig10376:4213..4371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue9e-22
Seed eggNOG ortholog2880.D8LQB2
KEGG koko:K21989
EggNOG free text desc.ion transport
EggNOG OGsCOG5594@1,KOG1134@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928244.8565996-CDS-Ecto-sp9_F_contig10376:4212..43711622928244.8565996-CDS-Ecto-sp9_F_contig10376:4212..4371Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10376 4213..4371 -
1692277807.1467283-CDS-Ecto-sp9_F_contig10376:4212..43711692277807.1467283-CDS-Ecto-sp9_F_contig10376:4212..4371Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10376 4213..4371 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10376.367.1prot_Ecto-sp9_F_contig10376.367.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10376 4213..4371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10376.367.1

>prot_Ecto-sp9_F_contig10376.367.1 ID=prot_Ecto-sp9_F_contig10376.367.1|Name=mRNA_Ecto-sp9_F_contig10376.367.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=53bp
ARRPARDHEDGDDGNARTAYLQPSLKAEPFARPELERDHQANIDFERFRG
RV*
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mRNA from alignment at Ecto-sp9_F_contig10376:4213..4371-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10376.367.1 ID=mRNA_Ecto-sp9_F_contig10376.367.1|Name=mRNA_Ecto-sp9_F_contig10376.367.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10376:4213..4371- (Ectocarpus species9 EcSCA_722f female)
GCCAGGCGGCCGGCGCGAGACCACGAGGACGGGGACGACGGCAACGCCCG
CACGGCCTACCTGCAGCCGAGCCTCAAGGCCGAGCCGTTCGCCAGGCCCG
AGCTGGAGCGAGACCACCAGGCCAACATCGACTTCGAACGCTTCCGCGGC
CGCGTATGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10376:4213..4371-

>mRNA_Ecto-sp9_F_contig10376.367.1 ID=mRNA_Ecto-sp9_F_contig10376.367.1|Name=mRNA_Ecto-sp9_F_contig10376.367.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10376:4213..4371- (Ectocarpus species9 EcSCA_722f female)
GCCAGGCGGCCGGCGCGAGACCACGAGGACGGGGACGACGGCAACGCCCG
CACGGCCTACCTGCAGCCGAGCCTCAAGGCCGAGCCGTTCGCCAGGCCCG
AGCTGGAGCGAGACCACCAGGCCAACATCGACTTCGAACGCTTCCGCGGC
CGCGTATGAGCCAGGCGGCCGGCGCGAGACCACGAGGACGGGGACGACGG
CAACGCCCGCACGGCCTACCTGCAGCCGAGCCTCAAGGCCGAGCCGTTCG
CCAGGCCCGAGCTGGAGCGAGACCACCAGGCCAACATCGACTTCGAACGC
TTCCGCGGCCGCGTATGA
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