mRNA_Ecto-sp9_F_contig10376.366.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10376.366.1
Unique NamemRNA_Ecto-sp9_F_contig10376.366.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10376.366.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10376contigEcto-sp9_F_contig10376:2194..2951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size760
Cds size384
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928244.255797-UTR-Ecto-sp9_F_contig10376:2193..25671622928244.255797-UTR-Ecto-sp9_F_contig10376:2193..2567Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10376 2194..2567 +
1692277807.1281643-UTR-Ecto-sp9_F_contig10376:2193..25671692277807.1281643-UTR-Ecto-sp9_F_contig10376:2193..2567Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10376 2194..2567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928244.2672257-CDS-Ecto-sp9_F_contig10376:2567..29511622928244.2672257-CDS-Ecto-sp9_F_contig10376:2567..2951Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10376 2568..2951 +
1692277807.137298-CDS-Ecto-sp9_F_contig10376:2567..29511692277807.137298-CDS-Ecto-sp9_F_contig10376:2567..2951Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10376 2568..2951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10376.366.1prot_Ecto-sp9_F_contig10376.366.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10376 2568..2951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10376.366.1

>prot_Ecto-sp9_F_contig10376.366.1 ID=prot_Ecto-sp9_F_contig10376.366.1|Name=mRNA_Ecto-sp9_F_contig10376.366.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=128bp
MEGGLLIPNEKCDAPFYCRIPPTTLGYLTRSFVLGTGQRPSCNTKIAKVG
AHASNTIRLALLLASTPRLQQGHRDTNKRLQIRKHLLCPTAVSKASATGP
LLPRPEIKTIKMNCLSGTPCIFPGRFLS
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mRNA from alignment at Ecto-sp9_F_contig10376:2194..2951+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10376.366.1 ID=mRNA_Ecto-sp9_F_contig10376.366.1|Name=mRNA_Ecto-sp9_F_contig10376.366.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=758bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10376:2194..2951+ (Ectocarpus species9 EcSCA_722f female)
CAGGATCAGATGGTGATGGTCGCTCTCCACGCACACCCAAAGGAATGCCG
GTAGTGTAAGCTGAAGGAAGAGAGGTCAGGATGAAGAGTGGTGCTTCGCG
TCAGCAGCAGCACAGCAGCGAGGGACGGATGGCCACGAATGACGCCGCCT
GCCCATACGGTGACACCACACTAAAATACTACCCATTCGTTCCACGTTCC
GTGTGGAAAATTATTTGGTACTGACCAAACCATCAAATGATCCGCAAATG
CACACATGGCATGGCCCGGACGACACCGATACGAGAACCATGAGGTGGAA
ACGAACCCAGATAAATATGGTATGGCATGGTAACTTAACCGGAAAAACAA
CAAGCGAACAACGCCTCGCACACTATGGAGGGGGGGCTATTGATTCCCAA
CGAAAAATGCGACGCACCATTTTATTGTCGTATTCCCCCGACAACGCTAG
GCTATTTAACAAGGAGCTTCGTCCTGGGTACAGGACAACGGCCAAGCTGC
AACACTAAAATAGCAAAGGTAGGTGCACACGCTAGCAACACGATCCGGCT
CGCTCTTCTCCTTGCTTCGACGCCCCGACTCCAACAGGGGCACCGGGACA
CAAACAAACGCCTCCAGATACGAAAACACCTCCTATGCCCCACCGCAGTG
AGCAAAGCCTCCGCTACAGGCCCCCTCCTTCCTAGACCGGAAATAAAAAC
CATCAAAATGAATTGCCTTTCAGGCACCCCGTGTATTTTTCCGGGACGAT
TTTTGTCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10376:2194..2951+

>mRNA_Ecto-sp9_F_contig10376.366.1 ID=mRNA_Ecto-sp9_F_contig10376.366.1|Name=mRNA_Ecto-sp9_F_contig10376.366.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=768bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10376:2194..2951+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGGGGGGGCTATTGATTCCCAACGAAAAATGCGACGCACCATTTTA
TTGTCGTATTCCCCCGACAACGCTAGGCTATTTAACAAGGAGCTTCGTCC
TGGGTACAGGACAACGGCCAAGCTGCAACACTAAAATAGCAAAGGTAGGT
GCACACGCTAGCAACACGATCCGGCTCGCTCTTCTCCTTGCTTCGACGCC
CCGACTCCAACAGGGGCACCGGGACACAAACAAACGCCTCCAGATACGAA
AACACCTCCTATGCCCCACCGCAGTGAGCAAAGCCTCCGCTACAGGCCCC
CTCCTTCCTAGACCGGAAATAAAAACCATCAAAATGAATTGCCTTTCAGG
CACCCCGTGTATTTTTCCGGGACGATTTTTGTCGATGGAGGGGGGGCTAT
TGATTCCCAACGAAAAATGCGACGCACCATTTTATTGTCGTATTCCCCCG
ACAACGCTAGGCTATTTAACAAGGAGCTTCGTCCTGGGTACAGGACAACG
GCCAAGCTGCAACACTAAAATAGCAAAGGTAGGTGCACACGCTAGCAACA
CGATCCGGCTCGCTCTTCTCCTTGCTTCGACGCCCCGACTCCAACAGGGG
CACCGGGACACAAACAAACGCCTCCAGATACGAAAACACCTCCTATGCCC
CACCGCAGTGAGCAAAGCCTCCGCTACAGGCCCCCTCCTTCCTAGACCGG
AAATAAAAACCATCAAAATGAATTGCCTTTCAGGCACCCCGTGTATTTTT
CCGGGACGATTTTTGTCG
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