mRNA_Ecto-sp9_F_contig10376.365.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10376.365.1
Unique NamemRNA_Ecto-sp9_F_contig10376.365.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10376.365.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10376contigEcto-sp9_F_contig10376:914..1334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size421
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10376.365.1prot_Ecto-sp9_F_contig10376.365.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10376 949..1263 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928243.9877512-UTR-Ecto-sp9_F_contig10376:913..9481622928243.9877512-UTR-Ecto-sp9_F_contig10376:913..948Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10376 914..948 +
1692277807.1008976-UTR-Ecto-sp9_F_contig10376:913..9481692277807.1008976-UTR-Ecto-sp9_F_contig10376:913..948Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10376 914..948 +
1622928244.1182754-UTR-Ecto-sp9_F_contig10376:1263..13341622928244.1182754-UTR-Ecto-sp9_F_contig10376:1263..1334Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10376 1264..1334 +
1692277807.117926-UTR-Ecto-sp9_F_contig10376:1263..13341692277807.117926-UTR-Ecto-sp9_F_contig10376:1263..1334Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10376 1264..1334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928244.004628-CDS-Ecto-sp9_F_contig10376:948..12631622928244.004628-CDS-Ecto-sp9_F_contig10376:948..1263Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10376 949..1263 +
1692277807.1090677-CDS-Ecto-sp9_F_contig10376:948..12631692277807.1090677-CDS-Ecto-sp9_F_contig10376:948..1263Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10376 949..1263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10376.365.1

>prot_Ecto-sp9_F_contig10376.365.1 ID=prot_Ecto-sp9_F_contig10376.365.1|Name=mRNA_Ecto-sp9_F_contig10376.365.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=105bp
MWRDGCRRYAWCGLCPGYIDAAAASNKTTKCRAFSPRFNFVLFLANAFGC
VSTNYFIAALAFSHPLARCSFAQQVYSGMIAVHDVCSAGVLQVYSSTCLC
VWYA*
back to top

mRNA from alignment at Ecto-sp9_F_contig10376:914..1334+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10376.365.1 ID=mRNA_Ecto-sp9_F_contig10376.365.1|Name=mRNA_Ecto-sp9_F_contig10376.365.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=421bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10376:914..1334+ (Ectocarpus species9 EcSCA_722f female)
GCGTTATAGCGACTCGTGCGTGCACGCAACCAGATATGTGGCGCGACGGC
TGTCGGAGATATGCATGGTGTGGCCTCTGCCCAGGCTATATCGATGCTGC
CGCCGCATCGAACAAAACGACAAAGTGTCGTGCTTTTTCCCCCCGTTTCA
ATTTTGTTTTGTTTTTGGCAAACGCATTTGGTTGCGTGTCTACTAATTAT
TTTATCGCCGCTCTCGCCTTTTCTCACCCTTTGGCAAGGTGTAGTTTTGC
GCAGCAGGTGTACAGCGGTATGATAGCCGTGCATGATGTGTGTTCCGCAG
GCGTGCTACAAGTATACTCTAGCACGTGTCTCTGTGTGTGGTATGCATAG
GAATGCAACCACCCAGAATGCGGTATGGCGCAATCATGCGCATTAAGAGA
GTCGTAGTAAGCAAGGAGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10376:914..1334+

>mRNA_Ecto-sp9_F_contig10376.365.1 ID=mRNA_Ecto-sp9_F_contig10376.365.1|Name=mRNA_Ecto-sp9_F_contig10376.365.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10376:914..1334+ (Ectocarpus species9 EcSCA_722f female)
ATGTGGCGCGACGGCTGTCGGAGATATGCATGGTGTGGCCTCTGCCCAGG
CTATATCGATGCTGCCGCCGCATCGAACAAAACGACAAAGTGTCGTGCTT
TTTCCCCCCGTTTCAATTTTGTTTTGTTTTTGGCAAACGCATTTGGTTGC
GTGTCTACTAATTATTTTATCGCCGCTCTCGCCTTTTCTCACCCTTTGGC
AAGGTGTAGTTTTGCGCAGCAGGTGTACAGCGGTATGATAGCCGTGCATG
ATGTGTGTTCCGCAGGCGTGCTACAAGTATACTCTAGCACGTGTCTCTGT
GTGTGGTATGCATAGATGTGGCGCGACGGCTGTCGGAGATATGCATGGTG
TGGCCTCTGCCCAGGCTATATCGATGCTGCCGCCGCATCGAACAAAACGA
CAAAGTGTCGTGCTTTTTCCCCCCGTTTCAATTTTGTTTTGTTTTTGGCA
AACGCATTTGGTTGCGTGTCTACTAATTATTTTATCGCCGCTCTCGCCTT
TTCTCACCCTTTGGCAAGGTGTAGTTTTGCGCAGCAGGTGTACAGCGGTA
TGATAGCCGTGCATGATGTGTGTTCCGCAGGCGTGCTACAAGTATACTCT
AGCACGTGTCTCTGTGTGTGGTATGCATAG
back to top