mRNA_Ecto-sp9_F_contig10374.363.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10374.363.1
Unique NamemRNA_Ecto-sp9_F_contig10374.363.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10374.363.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX9_9PHAE)

HSP 1 Score: 391 bits (1004), Expect = 2.890e-123
Identity = 211/225 (93.78%), Postives = 218/225 (96.89%), Query Frame = 1 
Query:    1 TAEGVELLQLIYSVFASAASRGLLTRTMVESGVVSAMSNDPMLALVRQASADKQCSVPRGYTNQSELSPHWQCYLLALRTTSDLTRTIHASKALSSPLASNAIAARWTAGVASSSSSSSAGGVSRDRMGPREAEAGLSQVFRFVDAFRETMVVGLSLVVSAPPTGGGRLTLAVVQESVDVAGVVAALGPWMSRWRAQHPGTSTQLLEAVRQATRTAAVLLVPATG 675
            TAEGVELLQLIYSVFASAASRGLLTRTMVESGVVSAM+NDPML LVRQASADKQCSVPRGYT+QSELSPHWQCYLLALRTTSDLTRTIHASKALSSPLASNA+AARWTAG+ SSSSS  AGGVSR+R+GPREAEAGLSQVFRFVD FRETMV GLSLVVSAPPTGGGRLTLAVVQESVDVAGVVAALGPW+ RWRAQHPGTSTQLLEAVRQATRTAAVLLVPATG
Sbjct:  727 TAEGVELLQLIYSVFASAASRGLLTRTMVESGVVSAMANDPMLTLVRQASADKQCSVPRGYTHQSELSPHWQCYLLALRTTSDLTRTIHASKALSSPLASNAVAARWTAGIVSSSSS--AGGVSRERIGPREAEAGLSQVFRFVDTFRETMVEGLSLVVSAPPTGGGRLTLAVVQESVDVAGVVAALGPWVERWRAQHPGTSTQLLEAVRQATRTAAVLLVPATG 949
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BLAST of mRNA_Ecto-sp9_F_contig10374.363.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV3_ECTSI)

HSP 1 Score: 382 bits (980), Expect = 2.850e-122
Identity = 211/231 (91.34%), Postives = 215/231 (93.07%), Query Frame = 1 
Query:    1 TAEGVELLQLIYSVFASAASRGLLTRTMVESGVVSAMSNDPMLALVRQASADKQCSVPRGYTNQSELSPHWQCYLLALRTTSDLTRTIHASKALSSPLASNAIAARWTAGVASSSSSSSA------GGVSRDRMGPREAEAGLSQVFRFVDAFRETMVVGLSLVVSAPPTGGGRLTLAVVQESVDVAGVVAALGPWMSRWRAQHPGTSTQLLEAVRQATRTAAVLLVPATG 675
            TAEGVELLQLIYSVFASAASRGLLTRTM+ESGVVSAMSNDPMLALVRQASADKQCSVPRGYTNQSELSPHWQCYLLALRTTSDLTRTI ASKALSSPLASNAIAARWTA V+              GGVSR+RMGPREAEAGLSQVFRFVDAFRETMVVGLSLVVSAPPTGGGRLTLAVVQES+DVAGVVAALGPWMSRWRAQHPGTSTQLLEAVRQATRTAAVLLVPATG
Sbjct:  310 TAEGVELLQLIYSVFASAASRGLLTRTMLESGVVSAMSNDPMLALVRQASADKQCSVPRGYTNQSELSPHWQCYLLALRTTSDLTRTIRASKALSSPLASNAIAARWTAVVSXXXXXXXXXXXXXXGGVSRERMGPREAEAGLSQVFRFVDAFRETMVVGLSLVVSAPPTGGGRLTLAVVQESMDVAGVVAALGPWMSRWRAQHPGTSTQLLEAVRQATRTAAVLLVPATG 540
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10374.363.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.890e-12393.78protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.850e-12291.34protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10374contigEcto-sp9_F_contig10374:1457..4185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_000780.1
Exons4
Model size677
Cds size675
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10374.363.1prot_Ecto-sp9_F_contig10374.363.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10374 1457..4185 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928242.6174572-CDS-Ecto-sp9_F_contig10374:1456..15101622928242.6174572-CDS-Ecto-sp9_F_contig10374:1456..1510Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10374 1457..1510 -
1692277807.0051687-CDS-Ecto-sp9_F_contig10374:1456..15101692277807.0051687-CDS-Ecto-sp9_F_contig10374:1456..1510Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10374 1457..1510 -
1622928242.6323152-CDS-Ecto-sp9_F_contig10374:2276..27351622928242.6323152-CDS-Ecto-sp9_F_contig10374:2276..2735Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10374 2277..2735 -
1692277807.0150573-CDS-Ecto-sp9_F_contig10374:2276..27351692277807.0150573-CDS-Ecto-sp9_F_contig10374:2276..2735Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10374 2277..2735 -
1622928242.6436021-CDS-Ecto-sp9_F_contig10374:3248..33831622928242.6436021-CDS-Ecto-sp9_F_contig10374:3248..3383Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10374 3249..3383 -
1692277807.0251272-CDS-Ecto-sp9_F_contig10374:3248..33831692277807.0251272-CDS-Ecto-sp9_F_contig10374:3248..3383Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10374 3249..3383 -
1622928242.654673-CDS-Ecto-sp9_F_contig10374:4158..41851622928242.654673-CDS-Ecto-sp9_F_contig10374:4158..4185Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10374 4159..4185 -
1692277807.0346162-CDS-Ecto-sp9_F_contig10374:4158..41851692277807.0346162-CDS-Ecto-sp9_F_contig10374:4158..4185Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10374 4159..4185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10374.363.1

>prot_Ecto-sp9_F_contig10374.363.1 ID=prot_Ecto-sp9_F_contig10374.363.1|Name=mRNA_Ecto-sp9_F_contig10374.363.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=225bp
TAEGVELLQLIYSVFASAASRGLLTRTMVESGVVSAMSNDPMLALVRQAS
ADKQCSVPRGYTNQSELSPHWQCYLLALRTTSDLTRTIHASKALSSPLAS
NAIAARWTAGVASSSSSSSAGGVSRDRMGPREAEAGLSQVFRFVDAFRET
MVVGLSLVVSAPPTGGGRLTLAVVQESVDVAGVVAALGPWMSRWRAQHPG
TSTQLLEAVRQATRTAAVLLVPATG
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mRNA from alignment at Ecto-sp9_F_contig10374:1457..4185-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10374.363.1 ID=mRNA_Ecto-sp9_F_contig10374.363.1|Name=mRNA_Ecto-sp9_F_contig10374.363.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2729bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10374:1457..4185- (Ectocarpus species9 EcSCA_722f female)
ACGGCGGAGGGGGTCGAGCTGTTGCAGGTACCGCTTCACCAGCAGCAGCT
GAATAGACTGTCCATCGTCAAGTTCGTCCAGTCTTACTTGTTTTGTCAGA
GCAGCAGCAGCAGCAGCAACAGAACCGAATGACTGCTGTCTGGCATTCAA
CTTCACACCGTGTTTTATTTTTTCACTCCTGCTGGGCCGGTGTCTTCGTC
TTCCAAGCGTTTCTATCGCTTTGCCTGTGGGGGTTCCGGCGTATGCACAC
GTAATACCCCTGTACTCAAACGGCCCTTCCTTAAGGCAACGGTCCCTATT
TAAGGCCGGCCAAATCGCGTGGTGCAGAAGGAATACTCAAGTTGTCTCAC
AATCTATTGAGTAGCGCCGGGTGCCCGGTATAAGGCCGGCCAAATCCCTT
GGCACTATGCGATATTGTACATACAGGGACCACGCCTGAACCTGTTCCAC
TTACCGGTGTCTCTACAGGCTGTCCTCAAGCCGATTCCTTACGGAATCAC
AAACAACGATTTCTACATGAACAGTTGCGGGTTGCTTCACCCTAGGCCTA
ACCCTAACCCCTGGGGACACTGACTATCGAAAGAGTTTTTTTGTTTCTTC
TCACAGCGTATGCCAAAATTCTCGTAACGCGGAAAACGACTAAATTCGTG
TGCATGGTGATCGATTTCGACTTGTTCATGGTCGACGAAGGAAAGAGGCG
GTTGAATCCTTGTCACGATCAACCGGTACGGCAAGCGTTGAGATCTCCAA
ACCCGCACAAGGTCACCCAAACGTATCCATTTTTTTTTTTTTTTGTGAGC
AGCTGATCTACAGCGTCTTCGCCAGCGCGGCGTCGAGAGGCCTCCTCACG
AGGACCATGGTGGAATCGGGCGTGGTCAGCGCCATGTCCAACGACCCCAT
GCTCGCGCTCGTGCGCCAAGCTTCCGCGGACAAGCAGGTGGGTACCCGCC
TTTGCCGTGAAGCGTTTTCAGCAGCGGGGACCCCGGTGTGAGTAGCACGG
TTCGTCGTCTATGGAGGTTTCGGCATGTCTGTACAAAGCGGCACTCTCTT
TTAAGGCCGATGAGTGATTTGCTTGTTTTTCGAGAGAGCGCGGTTGGTTC
TGTCTGTGCCGCACCAATCACTGCTGTTGAGCCAGCCGTGTGTGCCTTGA
ACAGGGAGATGAAAGAAAATAACAGCTCTATTAATATGTTCGCTTCTCTT
CGCTTGATACTAGTCGCCAACGTCCTCTCAACTCGAGTGTGCCGTTCCTT
TTTTGTCCTTCAGTTTTATTTTCTCGCAATATTCTGCAAAGGCGTACCGG
GTACCCCCTTTCGTCCTTGCTTTTGCTGAATGCTTGTTGTCGTAGAGGTA
TGGTACCCATTTTTGCCCTCGGGTTTGTGCTTTGTCCCAACATACGGTTC
AACAGCAGCACCCTTTTTTTTGGTCCTCGCGTGCCTCCTGTAACGTGCAG
TGCTCCGTCCCGCGCGGCTACACGAACCAGTCGGAGCTCTCCCCCCACTG
GCAGTGCTACCTGCTAGCCCTCCGGACCACGTCCGACCTAACCCGCACCA
TCCACGCCTCCAAAGCTCTATCGTCGCCACTGGCGAGCAACGCCATCGCG
GCGAGGTGGACCGCTGGCGTCGCCTCCTCCTCCTCCTCCTCCTCCGCAGG
CGGCGTGTCGAGGGACAGGATGGGGCCGCGAGAGGCGGAGGCGGGGCTGT
CGCAAGTCTTCCGCTTTGTTGACGCGTTCCGAGAGACAATGGTCGTGGGC
TTGTCGCTGGTTGTGTCGGCTCCGCCGACGGGGGGGGGCAGGCTTACCCT
AGCGGTCGTGCAGGAGAGCGTGGATGTGGCGGGCGTGGTGGCTGCGCTGG
GGCCGTGGATGTCGCGATGGAGGGCGCAGCACCCGGGCACGTCGACGCAG
CTGCTGGAGGTAGGCGTGGCGCTTCGGCTCCGCCCCCGCCGCGGCCTTGT
TGTTTCTGTTGTGCTGACGTTTGAAGTCATATCCCGGTTTTTTGCTGGGT
AAGCAAGCACCTTCTGACATGAGTTGCGGGTCCAACTGACGCAGATGCCT
TCCGTGGTGAACAGGCCAGCTACAATAGAAAACAAGGGACATCCTAGAAA
ATATCGAAGAGCAAGCCAAGAACGGACTCAACATCAACGCACACAAACGC
GATTGTGGAACAAAGCCGGAGATTCGTTGGTGTTGGTGTTGGGAGAGTCG
GGGTGGGTTTGCTGGTGGACACGTACGTAAGTACTCGCCAAAGTTTTGCG
GTGCGAAGAGGAATCGACGCTGTTTTTTGGGATAATGATGCTCGTGTGAT
GTCGAGATGGCTAATCGATATGTTGGTACACCCGGACTAACATCGGGGCG
GCTTGTCTCCCAGGCGTGGATGTGATTGGCAAAGAGTAGGTTGTACGGCT
CTCCTTAAGGACGTAGGTACAGCAATTTAGTTGACTCGAACCATCCAAGC
GCCAACGCGACACACACTGTGTTTGGAGTGAAGTTTCACCTACCAGCGCA
CATGTACAGTATGCGTAGCTGCCACAAGTTTTTTGTTTTTTTTTGTGCTC
CCGTGCGCGCTCGAAGATTACGGTTTCGAAAAAGCATCGCCGATAGCTCT
GCCAATCGCCACACAAACCGAGTACGTGCAACACTCCCACATCCCTGACC
CCACCCCCATCTGTTACCGCACCAGGCGGTGCGGCAGGCCACTCGCACAG
CGGCCGTCCTCCTAGTACCAGCCACCGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10374:1457..4185-

>mRNA_Ecto-sp9_F_contig10374.363.1 ID=mRNA_Ecto-sp9_F_contig10374.363.1|Name=mRNA_Ecto-sp9_F_contig10374.363.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1350bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10374:1457..4185- (Ectocarpus species9 EcSCA_722f female)
ACGGCGGAGGGGGTCGAGCTGTTGCAGACGGCGGAGGGGGTCGAGCTGTT
GCAGCTGATCTACAGCGTCTTCGCCAGCGCGGCGTCGAGAGGCCTCCTCA
CGAGGACCATGGTGGAATCGGGCGTGGTCAGCGCCATGTCCAACGACCCC
ATGCTCGCGCTCGTGCGCCAAGCTTCCGCGGACAAGCAGCTGATCTACAG
CGTCTTCGCCAGCGCGGCGTCGAGAGGCCTCCTCACGAGGACCATGGTGG
AATCGGGCGTGGTCAGCGCCATGTCCAACGACCCCATGCTCGCGCTCGTG
CGCCAAGCTTCCGCGGACAAGCAGTGCTCCGTCCCGCGCGGCTACACGAA
CCAGTCGGAGCTCTCCCCCCACTGGCAGTGCTACCTGCTAGCCCTCCGGA
CCACGTCCGACCTAACCCGCACCATCCACGCCTCCAAAGCTCTATCGTCG
CCACTGGCGAGCAACGCCATCGCGGCGAGGTGGACCGCTGGCGTCGCCTC
CTCCTCCTCCTCCTCCTCCGCAGGCGGCGTGTCGAGGGACAGGATGGGGC
CGCGAGAGGCGGAGGCGGGGCTGTCGCAAGTCTTCCGCTTTGTTGACGCG
TTCCGAGAGACAATGGTCGTGGGCTTGTCGCTGGTTGTGTCGGCTCCGCC
GACGGGGGGGGGCAGGCTTACCCTAGCGGTCGTGCAGGAGAGCGTGGATG
TGGCGGGCGTGGTGGCTGCGCTGGGGCCGTGGATGTCGCGATGGAGGGCG
CAGCACCCGGGCACGTCGACGCAGCTGCTGGAGTGCTCCGTCCCGCGCGG
CTACACGAACCAGTCGGAGCTCTCCCCCCACTGGCAGTGCTACCTGCTAG
CCCTCCGGACCACGTCCGACCTAACCCGCACCATCCACGCCTCCAAAGCT
CTATCGTCGCCACTGGCGAGCAACGCCATCGCGGCGAGGTGGACCGCTGG
CGTCGCCTCCTCCTCCTCCTCCTCCTCCGCAGGCGGCGTGTCGAGGGACA
GGATGGGGCCGCGAGAGGCGGAGGCGGGGCTGTCGCAAGTCTTCCGCTTT
GTTGACGCGTTCCGAGAGACAATGGTCGTGGGCTTGTCGCTGGTTGTGTC
GGCTCCGCCGACGGGGGGGGGCAGGCTTACCCTAGCGGTCGTGCAGGAGA
GCGTGGATGTGGCGGGCGTGGTGGCTGCGCTGGGGCCGTGGATGTCGCGA
TGGAGGGCGCAGCACCCGGGCACGTCGACGCAGCTGCTGGAGGCGGTGCG
GCAGGCCACTCGCACAGCGGCCGTCCTCCTAGTACCAGCCACCGGGGCGG
TGCGGCAGGCCACTCGCACAGCGGCCGTCCTCCTAGTACCAGCCACCGGG
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