mRNA_Ecto-sp9_F_contig10374.362.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10374.362.1
Unique NamemRNA_Ecto-sp9_F_contig10374.362.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10374.362.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX9_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.040e-35
Identity = 103/110 (93.64%), Postives = 105/110 (95.45%), Query Frame = -2 
Query:    2 ARRRSLEEFTPMQQATPTPARGAVGGGAAIXXXXXXXXXXXXXXXXXXXXXXXXXXGGMADSRPLELVKACALAVTAEEKAALDNGGGGVSSSDGAGQYPCAMTMATPTP 331
            ARRRSLEEFTPMQQATPTPARGAVGGGAAIXXXXXXXXXXXXXXXXXXXXXXX   GG+ADSRPLELV+ACALAVTAEEKAALDNGG GVSSSDG GQYPCAMTMATPTP
Sbjct:  986 ARRRSLEEFTPMQQATPTPARGAVGGGAAIXXXXXXXXXXXXXXXXXXXXXXXAG-GGIADSRPLELVEACALAVTAEEKAALDNGGYGVSSSDGGGQYPCAMTMATPTP 1094
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BLAST of mRNA_Ecto-sp9_F_contig10374.362.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV3_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 3.730e-28
Identity = 96/110 (87.27%), Postives = 96/110 (87.27%), Query Frame = -2 
Query:    2 ARRRSLEEFTPMQQATPTPARGAVGGGAAIXXXXXXXXXXXXXXXXXXXXXXXXXXGGMADSRPLELVKACALAVTAEEKAALDNGGGGVSSSDGAGQYPCAMTMATPTP 331
            ARRRSLEEFTPMQQATPTPARGAVGGGAAIXXXXXXXXXXXXXXXXXXXXXXXXXX  MADSRPLELVKACALAVTAEEKAA D G          GQYPCAMTMATPTP
Sbjct:  579 ARRRSLEEFTPMQQATPTPARGAVGGGAAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXMADSRPLELVKACALAVTAEEKAARDKGXXXXXXXXXXGQYPCAMTMATPTP 688
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10374.362.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.040e-3593.64protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.730e-2887.27protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10374contigEcto-sp9_F_contig10374:1015..1451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size437
Cds size414
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928241.972-UTR-Ecto-sp9_F_contig10374:1014..10371622928241.972-UTR-Ecto-sp9_F_contig10374:1014..1037Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10374 1015..1037 +
1692277806.987034-UTR-Ecto-sp9_F_contig10374:1014..10371692277806.987034-UTR-Ecto-sp9_F_contig10374:1014..1037Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10374 1015..1037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928241.984327-CDS-Ecto-sp9_F_contig10374:1037..14511622928241.984327-CDS-Ecto-sp9_F_contig10374:1037..1451Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10374 1038..1451 +
1692277806.9958754-CDS-Ecto-sp9_F_contig10374:1037..14511692277806.9958754-CDS-Ecto-sp9_F_contig10374:1037..1451Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10374 1038..1451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10374.362.1prot_Ecto-sp9_F_contig10374.362.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10374 1038..1451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10374.362.1

>prot_Ecto-sp9_F_contig10374.362.1 ID=prot_Ecto-sp9_F_contig10374.362.1|Name=mRNA_Ecto-sp9_F_contig10374.362.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=138bp
MAHGYCPAPSEEDTPPPPLSSAAFSSAVTASAQALTSSSGLESAIPPPVP
PPPPDVVAPATTAPPPAIGLAGVIAAPPPTAPLAGVGVACCIGVNSSKDL
RRATGDDHPPPPPPPPPPRTGVWPVAAEPPPVAADFVA
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mRNA from alignment at Ecto-sp9_F_contig10374:1015..1451+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10374.362.1 ID=mRNA_Ecto-sp9_F_contig10374.362.1|Name=mRNA_Ecto-sp9_F_contig10374.362.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=437bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10374:1015..1451+ (Ectocarpus species9 EcSCA_722f female)
CGGGCGTCGGAGTAGCCATCGTCATGGCACACGGGTACTGCCCCGCGCCG
TCAGAGGAAGACACGCCGCCACCGCCGTTGTCCAGCGCAGCCTTCTCTTC
GGCGGTGACGGCCAGCGCGCAGGCCTTGACGAGCTCCAGCGGCCTCGAGT
CGGCCATTCCTCCTCCGGTTCCTCCGCCGCCACCGGATGTGGTGGCTCCC
GCTACTACGGCCCCGCCCCCCGCAATAGGCCTGGCAGGCGTTATCGCGGC
GCCGCCGCCGACCGCTCCCCTGGCCGGGGTAGGGGTTGCCTGCTGCATCG
GCGTGAACTCCTCCAAGGATCTCCGGCGGGCAACAGGAGATGACCATCCC
CCGCCGCCGCCGCCGCCGCCCCCTCCGCGGACCGGGGTCTGGCCGGTTGC
CGCCGAGCCGCCGCCGGTGGCGGCGGACTTCGTCGCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10374:1015..1451+

>mRNA_Ecto-sp9_F_contig10374.362.1 ID=mRNA_Ecto-sp9_F_contig10374.362.1|Name=mRNA_Ecto-sp9_F_contig10374.362.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=828bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10374:1015..1451+ (Ectocarpus species9 EcSCA_722f female)
ATGGCACACGGGTACTGCCCCGCGCCGTCAGAGGAAGACACGCCGCCACC
GCCGTTGTCCAGCGCAGCCTTCTCTTCGGCGGTGACGGCCAGCGCGCAGG
CCTTGACGAGCTCCAGCGGCCTCGAGTCGGCCATTCCTCCTCCGGTTCCT
CCGCCGCCACCGGATGTGGTGGCTCCCGCTACTACGGCCCCGCCCCCCGC
AATAGGCCTGGCAGGCGTTATCGCGGCGCCGCCGCCGACCGCTCCCCTGG
CCGGGGTAGGGGTTGCCTGCTGCATCGGCGTGAACTCCTCCAAGGATCTC
CGGCGGGCAACAGGAGATGACCATCCCCCGCCGCCGCCGCCGCCGCCCCC
TCCGCGGACCGGGGTCTGGCCGGTTGCCGCCGAGCCGCCGCCGGTGGCGG
CGGACTTCGTCGCCATGGCACACGGGTACTGCCCCGCGCCGTCAGAGGAA
GACACGCCGCCACCGCCGTTGTCCAGCGCAGCCTTCTCTTCGGCGGTGAC
GGCCAGCGCGCAGGCCTTGACGAGCTCCAGCGGCCTCGAGTCGGCCATTC
CTCCTCCGGTTCCTCCGCCGCCACCGGATGTGGTGGCTCCCGCTACTACG
GCCCCGCCCCCCGCAATAGGCCTGGCAGGCGTTATCGCGGCGCCGCCGCC
GACCGCTCCCCTGGCCGGGGTAGGGGTTGCCTGCTGCATCGGCGTGAACT
CCTCCAAGGATCTCCGGCGGGCAACAGGAGATGACCATCCCCCGCCGCCG
CCGCCGCCGCCCCCTCCGCGGACCGGGGTCTGGCCGGTTGCCGCCGAGCC
GCCGCCGGTGGCGGCGGACTTCGTCGCC
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