mRNA_Ecto-sp9_F_contig10370.360.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig10370.360.1
Unique Name	mRNA_Ecto-sp9_F_contig10370.360.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10370.360.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ5_ECTSI)

HSP 1 Score: 488 bits (1256), Expect = 1.670e-173
Identity = 251/262 (95.80%), Postives = 255/262 (97.33%), Query Frame = 1

Query:    1 RGYDDADFDTRPRRRRSRDGIDAEPVPTGWDTAQWFSGAQEANQGGLYEWARSFYNTLFWYGGASSEDEDELPAMNFQDLLERFDLPAGEQSSARPRPIVPPEDLAAEQDFRWRPSGREATAGATAAAEGTNRSRAKGRGSTVSGGATGSTRRRARREREERDLDWESVGRPEREMRAAGGRGRREGRDDGDVVAIGQLRRKQRQLAEREHKCEVDLEKVRDRLDVVDATVELWMRRSAGMLSRGGSENDTDVLQTIRRDHV 786
            RGYDDADFDTRPRRRRSRDGIDAEPVPTGWDTAQWFSGAQEANQGGLYEWARSFYNTLFWYGGASSEDEDELPAMNFQDLLERFDLPAGEQSS RPRPIVPPEDLAAEQDF W+PSGREAT GATAAAEGTNRSR+K RGSTVSGGAT STRRRARREREERDLDWE+VGR EREMRAAGGRGRREGRDDGDVVAIGQLRRKQRQLAEREHKCEVDLEKVRDRLDVVDATVELWMRRSAGMLSRGGSE DTDVLQT+RRDHV
Sbjct:   19 RGYDDADFDTRPRRRRSRDGIDAEPVPTGWDTAQWFSGAQEANQGGLYEWARSFYNTLFWYGGASSEDEDELPAMNFQDLLERFDLPAGEQSSTRPRPIVPPEDLAAEQDFLWQPSGREATGGATAAAEGTNRSRSKDRGSTVSGGATRSTRRRARREREERDLDWENVGRAEREMRAAGGRGRREGRDDGDVVAIGQLRRKQRQLAEREHKCEVDLEKVRDRLDVVDATVELWMRRSAGMLSRGGSETDTDVLQTMRRDHV 280

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10370.360.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5V9_9PHAE)

HSP 1 Score: 464 bits (1194), Expect = 5.350e-160
Identity = 241/259 (93.05%), Postives = 244/259 (94.21%), Query Frame = 1

Query:    1 RGYDDADFDTRPRRRRSRDGIDAEPVPTGWDTAQWFSGAQEANQGGLYEWARSFYNTLFWYGGASSEDEDELPAMNFQDLLERFDLPAGEQSSARPRPIVPPEDLAAEQDFRWRPSGREATAGATAAAEGTNRSRAKGRGSTVSGGATGSTRRRARREREERDLDWESVGRPEREMRAAGGRGRREGRDDGDVVAIGQLRRKQRQLAEREHKCEVDLEKVRDRLDVVDATVELWMRRSAGMLSRGGSENDTDVLQTIRR 777
            R YDDAD DTRPRRRRSRD IDAEPVPTGWDTAQWF+GAQEANQGGLYEWARSFYNTLFWYGGASSE EDELPAMNFQDLLERFDLPAGEQSSARPRPIVPPEDLAAEQDFRWRPSGREAT GATA AE TN SRAKGRGST SGGATGS+RRRARRER+ERDLDWESVGR EREM AAGGRGRREG DDGDVVAIGQLRRKQRQLAEREHKCEVDLEKVRDRLDVVDATVELWMRRSAGMLSRGGSE DTDVLQ  RR
Sbjct:  171 RSYDDADVDTRPRRRRSRDDIDAEPVPTGWDTAQWFTGAQEANQGGLYEWARSFYNTLFWYGGASSEGEDELPAMNFQDLLERFDLPAGEQSSARPRPIVPPEDLAAEQDFRWRPSGREATGGATATAESTNWSRAKGRGSTASGGATGSSRRRARRERDERDLDWESVGRAEREMHAAGGRGRREGGDDGDVVAIGQLRRKQRQLAEREHKCEVDLEKVRDRLDVVDATVELWMRRSAGMLSRGGSETDTDVLQAKRR 429

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig10370.360.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig10370.360.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
Uncharacterized	1.670e-173	95.80	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	5.350e-160	93.05	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig10370	contig	Ecto-sp9_F_contig10370:926..3207 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-12_000020.1
Exons	5
Model size	786
Cds size	786
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig10370.360.1	prot_Ecto-sp9_F_contig10370.360.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig10370 926..3207 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928241.668159-CDS-Ecto-sp9_F_contig10370:925..1083	1622928241.668159-CDS-Ecto-sp9_F_contig10370:925..1083	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10370 926..1083 +
1692277806.8951457-CDS-Ecto-sp9_F_contig10370:925..1083	1692277806.8951457-CDS-Ecto-sp9_F_contig10370:925..1083	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10370 926..1083 +
1622928241.6812804-CDS-Ecto-sp9_F_contig10370:1398..1531	1622928241.6812804-CDS-Ecto-sp9_F_contig10370:1398..1531	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10370 1399..1531 +
1692277806.905925-CDS-Ecto-sp9_F_contig10370:1398..1531	1692277806.905925-CDS-Ecto-sp9_F_contig10370:1398..1531	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10370 1399..1531 +
1622928241.693289-CDS-Ecto-sp9_F_contig10370:1972..2338	1622928241.693289-CDS-Ecto-sp9_F_contig10370:1972..2338	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10370 1973..2338 +
1692277806.9136717-CDS-Ecto-sp9_F_contig10370:1972..2338	1692277806.9136717-CDS-Ecto-sp9_F_contig10370:1972..2338	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10370 1973..2338 +
1622928241.7068937-CDS-Ecto-sp9_F_contig10370:2882..2990	1622928241.7068937-CDS-Ecto-sp9_F_contig10370:2882..2990	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10370 2883..2990 +
1692277806.9262285-CDS-Ecto-sp9_F_contig10370:2882..2990	1692277806.9262285-CDS-Ecto-sp9_F_contig10370:2882..2990	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10370 2883..2990 +
1622928241.7203443-CDS-Ecto-sp9_F_contig10370:3186..3207	1622928241.7203443-CDS-Ecto-sp9_F_contig10370:3186..3207	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10370 3187..3207 +
1692277806.9341557-CDS-Ecto-sp9_F_contig10370:3186..3207	1692277806.9341557-CDS-Ecto-sp9_F_contig10370:3186..3207	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10370 3187..3207 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig10370:926..3207+
coding sequence from alignment at Ecto-sp9_F_contig10370:926..3207+

protein sequence of mRNA_Ecto-sp9_F_contig10370.360.1

>prot_Ecto-sp9_F_contig10370.360.1 ID=prot_Ecto-sp9_F_contig10370.360.1|Name=mRNA_Ecto-sp9_F_contig10370.360.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=262bp
RGYDDADFDTRPRRRRSRDGIDAEPVPTGWDTAQWFSGAQEANQGGLYEW
ARSFYNTLFWYGGASSEDEDELPAMNFQDLLERFDLPAGEQSSARPRPIV
PPEDLAAEQDFRWRPSGREATAGATAAAEGTNRSRAKGRGSTVSGGATGS
TRRRARREREERDLDWESVGRPEREMRAAGGRGRREGRDDGDVVAIGQLR
RKQRQLAEREHKCEVDLEKVRDRLDVVDATVELWMRRSAGMLSRGGSEND
TDVLQTIRRDHV

mRNA from alignment at Ecto-sp9_F_contig10370:926..3207+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig10370.360.1 ID=mRNA_Ecto-sp9_F_contig10370.360.1|Name=mRNA_Ecto-sp9_F_contig10370.360.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2282bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10370:926..3207+ (Ectocarpus species9 EcSCA_722f female)
AGGGGCTACGATGACGCCGACTTTGACACCCGACCGCGGCGTCGAAGATC
GAGAGACGGCATCGACGCCGAGCCCGTCCCGACGGGCTGGGACACGGCGC
AATGGTTCAGCGGGGCGCAGGAGGCAAATCAGGGTGGGCTTTATGAGTGG
GCGAGAAGGTGCGTGTAGGCTCGTTGTGTTTTTTCGCATGAGCGTAACTT
GCAGACGCGTACGCACGCCACTCAAGGGACGCAAGCAGCCACCGACAAGA
AGAACACAAGATCAGGTGGGAGGGCGTATCCGGGAGGCATACAACATTTG
CCAAGGAAACGCCGTTGCGCCAAGATCAGTCCTGCCGCTACTACTGCTCG
ATATGAACCGGGTGCTGTAGCGAGTGGCGTTGGTTGGAGAACACTCAACG
TTGTGTACGCGTACATACACATGTGGGCGACGTCTGTGCCCCCTCCCCAT
CGCTATCCACCCCAACCGTCCAGTTTTTACAACACCCTTTTCTGGTACGG
AGGAGCGTCGTCCGAGGACGAGGATGAGCTGCCCGCGATGAACTTCCAGG
ACCTGTTGGAACGCTTCGACCTGCCTGCCGGCGAACAGTCGTCGGCAAGA
CCGCGGGTGAGAGAGGGTCACCATCGCGCATCTAGTGGGTGCAGCGGTAA
AGTACAATTGCGGTTATTATAACATTATAGTATTGTAGTATTATAATATT
GTAGTATTATAGTATAGTAGTAGCACGTCACAAGGAAGGGGTGAAACGAA
TCCTGGGTGTGTTACTTTCTTGCTGTGCGACCGGGGCGCTTTCGTTCGAA
AAGGTGTAGATCAACGCGTCCAGATCAGTTGGATGACACTCACCCACACA
GTATTCAGTACAGGACAGGCCGATACTGACTTGTTTTCATTGGTCAGCCG
ATTAGCTTAGCGCGCTGGGTGCTATTCGAGTATGAGGCACACTATTCGGT
TTTTCCTCAGCTAGACCCCGCCGCCCCCGCCCCCCGGCCCTTCGACGTAC
CTGAATCCCGTCCTTGCGTCCTATGGGCTGCAACCTGCAACCTGAAGCCG
ATCGTCCCGCCAGAGGACCTTGCCGCAGAGCAAGACTTTCGCTGGCGACC
AAGTGGCCGAGAGGCCACCGCCGGTGCCACCGCCGCCGCTGAGGGCACGA
ACCGGAGCCGCGCGAAAGGTAGAGGCTCCACCGTAAGCGGCGGTGCTACG
GGGAGCACCAGAAGGCGGGCTAGACGTGAGCGGGAGGAGCGCGATCTAGA
CTGGGAAAGCGTCGGGCGACCGGAGCGGGAGATGCGTGCTGCGGGTGGCA
GAGGGAGAAGGGAGGGTAGAGACGACGGGGATGTGGTGGCAATAGGACAG
CTACGACGAAAACAGAGGCAGTTGGCGGAGAGGGAACACAAGTGCGAGGT
GGACCTAGAAAAGGTGAGCAGGTAAAAGTAGACAGGCTCGTTGGTGTTCC
TTGTCTTGTCTTGTGCGTGGCGAGTGTTTGGCCTCAGTGGACAGGATACC
GGATATGACTGCATTGCTGCCTCGTGACGTGCTGTGAATCTTCAATCTCC
AGATCTCTCAGGGTTGTGTTGTAGGTGTCATCTGCAACATGCCTATTGTA
TTTGTTTACCTTCCTTGTCGGCCAGAACTCTAGACTAGACTACACCTCTC
GTCGACCAACCGTCTTTTTCGCCGATTTTTCTTACATCCAACCGAAGTCA
CGCCTGTTGTATTACTGCAACCCTTGCTGTGCTCGGCCGCACTTTCGTCG
CGAATTGGCCCAGTCTTGGCTCACAAAGGCAATGTTCAATCTTGTGAATT
CTACACTTGTTTCTATGCTACAAACCGCAAATTAAACCGCGGTGATGACG
CTATAATTTTGCGCCACATCCCTCTGATGCGTATTGTTTACTTTGCTGGC
GACCTCTTTCTCTCCTGCTTCTCAACTGCGGTGATTTCTTCTTTTGTTTG
GGTACAGGTTCGGGATCGCCTTGACGTGGTGGATGCTACGGTGGAGCTGT
GGATGCGCCGATCGGCGGGCATGTTGTCGCGAGGGGGTTCCGAGAATGAC
ACGGATGTGCTTCAGGTATTCACTTCACTGCATTCAAGTCGCAACAGAAA
CCACTTGTCGACAGTAGAGGCGGTACGAAACACAGACTTCTGTAATTTCT
CTATGAGTCTTGTGTTCCGGCCTCCTGCGCATGTATCATGTTGGCCCACT
CTTGCCCTTCCTCGTTTCGCCCTCGGCGTTGGTACGGATTGTTGCGGCAC
TGATTGCCGAGACCATCAGGCGCGACCATGTG

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10370:926..3207+

>mRNA_Ecto-sp9_F_contig10370.360.1 ID=mRNA_Ecto-sp9_F_contig10370.360.1|Name=mRNA_Ecto-sp9_F_contig10370.360.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1572bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10370:926..3207+ (Ectocarpus species9 EcSCA_722f female)
AGGGGCTACGATGACGCCGACTTTGACACCCGACCGCGGCGTCGAAGATC
GAGAGACGGCATCGACGCCGAGCCCGTCCCGACGGGCTGGGACACGGCGC
AATGGTTCAGCGGGGCGCAGGAGGCAAATCAGGGTGGGCTTTATGAGTGG
GCGAGAAGAGGGGCTACGATGACGCCGACTTTGACACCCGACCGCGGCGT
CGAAGATCGAGAGACGGCATCGACGCCGAGCCCGTCCCGACGGGCTGGGA
CACGGCGCAATGGTTCAGCGGGGCGCAGGAGGCAAATCAGGGTGGGCTTT
ATGAGTGGGCGAGAAGTTTTTACAACACCCTTTTCTGGTACGGAGGAGCG
TCGTCCGAGGACGAGGATGAGCTGCCCGCGATGAACTTCCAGGACCTGTT
GGAACGCTTCGACCTGCCTGCCGGCGAACAGTCGTCGGCAAGACCGCGGT
TTTTACAACACCCTTTTCTGGTACGGAGGAGCGTCGTCCGAGGACGAGGA
TGAGCTGCCCGCGATGAACTTCCAGGACCTGTTGGAACGCTTCGACCTGC
CTGCCGGCGAACAGTCGTCGGCAAGACCGCGGCCGATCGTCCCGCCAGAG
GACCTTGCCGCAGAGCAAGACTTTCGCTGGCGACCAAGTGGCCGAGAGGC
CACCGCCGGTGCCACCGCCGCCGCTGAGGGCACGAACCGGAGCCGCGCGA
AAGGTAGAGGCTCCACCGTAAGCGGCGGTGCTACGGGGAGCACCAGAAGG
CGGGCTAGACGTGAGCGGGAGGAGCGCGATCTAGACTGGGAAAGCGTCGG
GCGACCGGAGCGGGAGATGCGTGCTGCGGGTGGCAGAGGGAGAAGGGAGG
GTAGAGACGACGGGGATGTGGTGGCAATAGGACAGCTACGACGAAAACAG
AGGCAGTTGGCGGAGAGGGAACACAAGTGCGAGGTGGACCTAGAAAAGCC
GATCGTCCCGCCAGAGGACCTTGCCGCAGAGCAAGACTTTCGCTGGCGAC
CAAGTGGCCGAGAGGCCACCGCCGGTGCCACCGCCGCCGCTGAGGGCACG
AACCGGAGCCGCGCGAAAGGTAGAGGCTCCACCGTAAGCGGCGGTGCTAC
GGGGAGCACCAGAAGGCGGGCTAGACGTGAGCGGGAGGAGCGCGATCTAG
ACTGGGAAAGCGTCGGGCGACCGGAGCGGGAGATGCGTGCTGCGGGTGGC
AGAGGGAGAAGGGAGGGTAGAGACGACGGGGATGTGGTGGCAATAGGACA
GCTACGACGAAAACAGAGGCAGTTGGCGGAGAGGGAACACAAGTGCGAGG
TGGACCTAGAAAAGGTTCGGGATCGCCTTGACGTGGTGGATGCTACGGTG
GAGCTGTGGATGCGCCGATCGGCGGGCATGTTGTCGCGAGGGGGTTCCGA
GAATGACACGGATGTGCTTCAGGTTCGGGATCGCCTTGACGTGGTGGATG
CTACGGTGGAGCTGTGGATGCGCCGATCGGCGGGCATGTTGTCGCGAGGG
GGTTCCGAGAATGACACGGATGTGCTTCAGACCATCAGGCGCGACCATGT
GACCATCAGGCGCGACCATGTG