mRNA_Ecto-sp9_F_contig1037.359.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1037.359.1
Unique NamemRNA_Ecto-sp9_F_contig1037.359.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1037.359.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAR2_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 4.060e-55
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 1 
Query:    1 HGSSIFVDVRENYLGAYLGEGMSHPLLYQIAEEAAVRLPRILGRDTPGWPLAQTWFYVYGGNDGERCTRGIRVHADTAEINLNIWLTD 264
            HGSSIFVDVRENYLGAY GEGMSHPLLYQIAEEAAVRLPRILGRDTPGWPLAQTWFY+YGGNDGERC RGIRVHADTAEINLNIWLTD
Sbjct:  290 HGSSIFVDVRENYLGAYPGEGMSHPLLYQIAEEAAVRLPRILGRDTPGWPLAQTWFYIYGGNDGERCMRGIRVHADTAEINLNIWLTD 377
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BLAST of mRNA_Ecto-sp9_F_contig1037.359.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E2_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 4.490e-54
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:    1 HGSSIFVDVRENYLGAYLGEGMSHPLLYQIAEEAAVRLPRILGRDTPGWPLAQTWFYVYGGNDGERCTRGIRVHADTAEINLNIWLTD 264
            HGSSIFVDVRENYLGAYLGEGMSHPLLYQIAEE AVRLPRILGRDTPGWPLAQTWFY+YGGNDGERCTRGIRVHADTAEINLNIWLTD
Sbjct: 1031 HGSSIFVDVRENYLGAYLGEGMSHPLLYQIAEEVAVRLPRILGRDTPGWPLAQTWFYIYGGNDGERCTRGIRVHADTAEINLNIWLTD 1118
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BLAST of mRNA_Ecto-sp9_F_contig1037.359.1 vs.
Match: Uncharacterized (protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E3DBB3_9GAMM)

HSP 1 Score: 65.9 bits (159), Expect = 1.310e-10
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:    4 GSSIFVDVREN--YLGAYLGEGMSHPLLYQIAEEAAVRLPRILGRDTPGWPLAQTWFYVYGGNDGERCT-RGIRVHADTAEINLNIWLT 261
            GS+I+ D   +  Y+GAYL +G+S PL+ QIAE+  ++LP+I         L Q W Y Y     ++ +  GI  HAD A IN+N W+T
Sbjct:  433 GSTIWFDFSHSNGYIGAYLKDGLSSPLILQIAEDLRLKLPKIFKHHK----LTQLWAYKYDSRARDKGSFGGIGAHADFAAINVNFWIT 517
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BLAST of mRNA_Ecto-sp9_F_contig1037.359.1 vs.
Match: Uncharacterized (protein n=1 Tax=Candidatus Melainabacteria bacterium HGW-Melainabacteria-1 TaxID=2013813 RepID=A0A2N1V5K5_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 8.370e-10
Identity = 36/75 (48.00%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:   37 YLGAYLGEGMSHPLLYQIAEEAAVRLPRILGRDTPGWPLAQTWFYVYGGNDGERCTRGIRVHADTAEINLNIWLT 261
            YLGAYL +G S  LLYQIA E    LP++      G PL   W Y Y   D +R   GI +HAD A IN+N W+T
Sbjct:  340 YLGAYLDDGFSCDLLYQIALELRDALPQVF----KGLPLKHMWAYKY---DSQR--EGIGIHADGAAINVNFWIT 405
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BLAST of mRNA_Ecto-sp9_F_contig1037.359.1 vs.
Match: Uncharacterized (protein n=1 Tax=bacterium (Candidatus Blackallbacteria) CG17_big_fil_post_rev_8_21_14_2_50_48_46 TaxID=2014261 RepID=A0A2M7G610_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 2.150e-9
Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = 1 
Query:   31 ENYLGAYLGEGMSHPLLYQIAEEAAVRLPRILGRDTPGWPLAQTWFYVYGGNDGERCTRGIRVHADTAEINLNIWLT 261
            E YLGA++ +G ++ LL+ IA+E    +P+I        PL   W + Y        ++GIR+HAD A+INLN WLT
Sbjct:  379 EGYLGAFMDDGFANRLLFGIAQELTEAMPKIF----KNLPLRYLWAFKYHSE-----SKGIRLHADQAQINLNFWLT 446
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BLAST of mRNA_Ecto-sp9_F_contig1037.359.1 vs.
Match: Tetratricopeptide (repeat protein n=6 Tax=unclassified Nitrospira TaxID=2652172 RepID=A0A6N9E179_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 2.150e-9
Identity = 33/80 (41.25%), Postives = 44/80 (55.00%), Query Frame = 1 
Query:   22 DVRENYLGAYLGEGMSHPLLYQIAEEAAVRLPRILGRDTPGWPLAQTWFYVYGGNDGERCTRGIRVHADTAEINLNIWLT 261
            D  + Y+GA+LGEG S PLL QIAEE     P I  +      L Q W +     D  R  R +++HAD A +N+N W+T
Sbjct:  397 DYEDGYIGAFLGEGFSSPLLLQIAEELRTAFPGIFHQHR----LLQAWAFK---QDSAR--RPLKIHADAAAVNVNFWIT 467
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BLAST of mRNA_Ecto-sp9_F_contig1037.359.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BXC2_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.950e-7
Identity = 28/75 (37.33%), Postives = 42/75 (56.00%), Query Frame = 1 
Query:   37 YLGAYLGEGMSHPLLYQIAEEAAVRLPRILGRDTPGWPLAQTWFYVYGGNDGERCTRGIRVHADTAEINLNIWLT 261
            Y+GAY+ +G+ H LL  +A +    LP+++     G  L   W Y Y         RGI++HAD A +N+NIW+T
Sbjct:  149 YVGAYIDDGLHHRLLLALAFDLHKALPQLM----TGHDLQYLWAYQYDPQ-----FRGIKIHADQAAVNVNIWVT 214
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BLAST of mRNA_Ecto-sp9_F_contig1037.359.1 vs.
Match: Tetratricopeptide (repeat protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FAB2_9PROT)

HSP 1 Score: 52.0 bits (123), Expect = 9.670e-6
Identity = 33/87 (37.93%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:    7 SSIFVDVRE--NYLGAYLGEGMSHPLLYQIAEEAAVRLPRILGRDTPGWPLAQTWFYVYGGNDGERCTRGIRVHADTAEINLNIWLT 261
            S+I+ D      ++ AYL +G++ PLL QIA      LP +L       PLAQ W   + G  G+R    I +HAD+A ++LN W+T
Sbjct:  265 STIWYDFTHIPGFVAAYLEDGLASPLLLQIAGALREALPAVLDPH----PLAQGW--AFKGVAGDR---PIDLHADSAAVSLNFWIT 342
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BLAST of mRNA_Ecto-sp9_F_contig1037.359.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEK0_AURAN)

HSP 1 Score: 50.1 bits (118), Expect = 4.580e-5
Identity = 28/75 (37.33%), Postives = 40/75 (53.33%), Query Frame = 1 
Query:   37 YLGAYLGEGMSHPLLYQIAEEAAVRLPRILGRDTPGWPLAQTWFYVYGGNDGERCTRGIRVHADTAEINLNIWLT 261
            Y+GA + +G+    L ++A      +P    RD P   LA  W Y Y  + G     GI+VHAD A +N+N+WLT
Sbjct:  241 YVGAIVEDGLHARALLELASALQRAMPETF-RDRP---LAYLWCYKYDSDYG-----GIKVHADEAAVNVNVWLT 306
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1037.359.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
Uncharacterized4.060e-5596.59protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.490e-5497.73protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.310e-1040.45protein n=1 Tax=Gammaproteobacteria bacterium TaxI... [more]
Uncharacterized8.370e-1048.00protein n=1 Tax=Candidatus Melainabacteria bacteri... [more]
Uncharacterized2.150e-940.26protein n=1 Tax=bacterium (Candidatus Blackallbact... [more]
Tetratricopeptide2.150e-941.25repeat protein n=6 Tax=unclassified Nitrospira Tax... [more]
Hypothetical3.950e-737.33protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Tetratricopeptide9.670e-637.93repeat protein n=1 Tax=Alphaproteobacteria bacteri... [more]
Uncharacterized4.580e-537.33protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1037contigEcto-sp9_F_contig1037:21058..22924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.5
Seed ortholog evalue6.7e-46
Seed eggNOG ortholog2880.D7G5E2
EggNOG OGs2CY2I@1,2S1H1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size265
Cds size264
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1037.359.1prot_Ecto-sp9_F_contig1037.359.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1037 21058..22924 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928241.5843897-CDS-Ecto-sp9_F_contig1037:21057..211051622928241.5843897-CDS-Ecto-sp9_F_contig1037:21057..21105Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1037 21058..21105 -
1692277806.856995-CDS-Ecto-sp9_F_contig1037:21057..211051692277806.856995-CDS-Ecto-sp9_F_contig1037:21057..21105Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1037 21058..21105 -
1622928241.5958602-CDS-Ecto-sp9_F_contig1037:21501..215981622928241.5958602-CDS-Ecto-sp9_F_contig1037:21501..21598Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1037 21502..21598 -
1692277806.867325-CDS-Ecto-sp9_F_contig1037:21501..215981692277806.867325-CDS-Ecto-sp9_F_contig1037:21501..21598Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1037 21502..21598 -
1622928241.6082814-CDS-Ecto-sp9_F_contig1037:21881..219711622928241.6082814-CDS-Ecto-sp9_F_contig1037:21881..21971Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1037 21882..21971 -
1692277806.8762121-CDS-Ecto-sp9_F_contig1037:21881..219711692277806.8762121-CDS-Ecto-sp9_F_contig1037:21881..21971Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1037 21882..21971 -
1622928241.6242795-CDS-Ecto-sp9_F_contig1037:22895..229241622928241.6242795-CDS-Ecto-sp9_F_contig1037:22895..22924Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1037 22896..22924 -
1692277806.8853893-CDS-Ecto-sp9_F_contig1037:22895..229241692277806.8853893-CDS-Ecto-sp9_F_contig1037:22895..22924Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1037 22896..22924 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1037.359.1

>prot_Ecto-sp9_F_contig1037.359.1 ID=prot_Ecto-sp9_F_contig1037.359.1|Name=mRNA_Ecto-sp9_F_contig1037.359.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=88bp
HGSSIFVDVRENYLGAYLGEGMSHPLLYQIAEEAAVRLPRILGRDTPGWP
LAQTWFYVYGGNDGERCTRGIRVHADTAEINLNIWLTD
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mRNA from alignment at Ecto-sp9_F_contig1037:21058..22924-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1037.359.1 ID=mRNA_Ecto-sp9_F_contig1037.359.1|Name=mRNA_Ecto-sp9_F_contig1037.359.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1867bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1037:21058..22924- (Ectocarpus species9 EcSCA_722f female)
CACGGATCGAGCATCTTCGTCGACGTCAGGTATATACCTTGCGGATCACA
GGGACGAAACTCGAAAATCCAACCGCCCTCCTTGTGTCCAAAATGCTCCA
GAAGAGACGAAGAAAGAAGTGGTCACATCTCGCCTTTTAAGAGTCGGGCA
TGCTGACTTTCAACAGGCTCGGTAGGCTACAGAGAAATGCTCGAGGTGAA
CTCCCGCCATCCGAAGGGGACGAGCCAACAATATTTCAAACACACGATTA
CTATTGAAGTTTCCCTTCTTTCAGCAAAGATGTCGAAAAAGACCTTATTA
GACGCACCGGCTGCCTCAGGCAAACATATTGTAGCTCGTCTAGTCCCGTA
TTCCGAGAAGAAGGTGGCGCTCCCACGAGGTGCATAGCGAAGCAACATGA
AAAGACAGGATTGGGCATTAGGCAATCGTTCAACGAAAACTTGTGCCACG
TTGGAGAGGGGCCCCGCAAATGGCACCAAGCGTACCAGCTTGAGCGCAGA
TGTTCCGGCCTGGCCCTGCTCGCTTGGTAGGGACCCAACCACCGAGGTGT
TGACGCTGAAAAATCATGGCAGTCATGAATCAAAACAATACGAAGGTGTA
CTGATTTTGGTAAAAGTCAATTGACGGATACCCTGCGAATCGGGTCCTAC
TTAACATTCTCCACCAACAGAATTTACCCCCAACTGGGAACCTCTTGTGG
CCAGACGATGGAAGTGTCGTAGATTCTTTTAAGGGTCGACTCCAGAAGGT
GTTCTCAGGACTGACACACATTTTTATCCATGGAAAAATGTCCAAGTCAG
GAGAAAAATGTGTGCCCAAGGAGATTCGAACCAGTATCCTGCCACTGACG
CCACATGCGAAGGTGTACCGATTCTCGTAAAAAGTCAATCGACGGATACC
CTGCGAATCACGTCCTCCTTAGCAACAACCGTACATTTCGTTTTTCTCTG
AAGGGAAAATTACCTGGGGGCCTACCTCGGCGAAGGCATGAGTCATCCTC
TACTCTACCAGATCGCCGAAGAAGCGGCGGTTCGCCTTCCGAGGTAAAGC
GCAAAGAAGAAAGCATTTACAGTGAGTGGTGAAGACCTTGTACTACAGTG
AGTGCCAAATGAATCTACCGACGCAAAGCAAGGGCGGCACCACGGTTCAG
TGCAACAAGCCTCTTGCCAAGCACCATATTACAAAAAATGATCCATTCAC
CATGGAGGCCAAGCCAGAACAAGAGTTCGCGAATCAGCCAAAGCATCCCG
TCTAACGGAGGATTTAGAACAAGTGTTAGCGGCGGATGTTTTACTCATGT
GCGGGTTTCGTCGGGCACACAATCAGGATCCTGGGACGCGACACTCCCGG
CTGGCCACTGGCGCAGACGTGGTTTTACGTCTACGGAGGGAACGATGGAG
AAAGATGCACGCGTGGCATAAGGGTAAGAGAAACATCCAGAACACAGATG
GATGCGAAAAAGTATTGCCTCCAAGCGTAATTTCTTGAGGTGGTACTGCA
GCAACAGGTGCCAACTTGAGTGGATGCAGGGGCCGTAGCGCGCAGACGGA
ACCTAGCGCTTGACGTAGGTCAAATGATCGGAAGGTTAAGGTTGTGCACA
CACAGGCTGCTGGCCACGCCAAAACGCAGGCTTGGGTCGACGATACCCCA
GGCCTCGCGTGTTGACTTGGAAAAACCTGCGTAGCCTACTGCAAATTGGG
AAACTCCATGTACTCTTAAGGTTCACGCGTCTAGTACACTCAGCCGTAGC
CGTACACACCAGACGGCTCTAATAAACCTCACCCCGATGTCGACACGGCG
GCGTTCTTGTCGATGCCAGGTGCATGCCGACACCGCAGAAATCAACTTAA
ATATTTGGCTGACGGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1037:21058..22924-

>mRNA_Ecto-sp9_F_contig1037.359.1 ID=mRNA_Ecto-sp9_F_contig1037.359.1|Name=mRNA_Ecto-sp9_F_contig1037.359.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1037:21058..22924- (Ectocarpus species9 EcSCA_722f female)
CACGGATCGAGCATCTTCGTCGACGTCAGCACGGATCGAGCATCTTCGTC
GACGTCAGGGAAAATTACCTGGGGGCCTACCTCGGCGAAGGCATGAGTCA
TCCTCTACTCTACCAGATCGCCGAAGAAGCGGCGGTTCGCCTTCCGAGGG
AAAATTACCTGGGGGCCTACCTCGGCGAAGGCATGAGTCATCCTCTACTC
TACCAGATCGCCGAAGAAGCGGCGGTTCGCCTTCCGAGGATCCTGGGACG
CGACACTCCCGGCTGGCCACTGGCGCAGACGTGGTTTTACGTCTACGGAG
GGAACGATGGAGAAAGATGCACGCGTGGCATAAGGGATCCTGGGACGCGA
CACTCCCGGCTGGCCACTGGCGCAGACGTGGTTTTACGTCTACGGAGGGA
ACGATGGAGAAAGATGCACGCGTGGCATAAGGGTGCATGCCGACACCGCA
GAAATCAACTTAAATATTTGGCTGACGGACGTGCATGCCGACACCGCAGA
AATCAACTTAAATATTTGGCTGACGGAC
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