mRNA_Ecto-sp9_F_contig1037.358.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1037.358.1
Unique NamemRNA_Ecto-sp9_F_contig1037.358.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Match: Similar (to deubiquitinating enzyme 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR8_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 8.490e-25
Identity = 56/111 (50.45%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    1 VYIYLLRFAYEGGASGERTLTENVQIPFSIDLAPLTAKPGTAASHKESSLYGLNGVVHHRGETIGRGHFTACVRLEGNQWQRYDDTTVANVALRNVRTEEAIILAYTRQSG 333
            V +YL+RFAY     GE+ LT +V IP  ID+AP    P T A  ++  +Y LNGVVHH G+T  +GH+ A VRL G  W RYDD  V  V   +VRT+ A+IL+YTR+SG
Sbjct: 1318 VLLYLMRFAYT--TRGEK-LTHDVYIPKEIDMAPYIGPPTTRAGARQPDMYDLNGVVHHIGQTTNKGHYVAFVRLPGEGWLRYDDAKVTGVTDSDVRTQNALILSYTRRSG 1425          
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Match: USP (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB9_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.820e-23
Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 VYIYLLRFAYEGGASGERTLTENVQIPFSIDLAPLTAKPGTAASHKESSLYGLNGVVHHRGETIGRGHFTACVRLEGNQWQRYDDTTVANVALRNVRTEEAIILAYTRQSG 333
            V +YL+RFAY     GE+ L  +V IP  ID+AP    P + A  ++  +Y LNGVVHH G+T  +GH+ A VRL G  W RYDD  V  V   +VRT+ A+IL+YTR+SG
Sbjct:  798 VLLYLMRFAYT--TRGEK-LIHDVYIPKEIDMAPYIGPPTSRAGARQPDMYDLNGVVHHIGQTTNKGHYVAFVRLPGEGWLRYDDAKVTGVTDSDVRTQNALILSYTRRSG 905          
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E3_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.260e-9
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 2
Query:  140 NPPSTASTELYTTGERPSAEGTSLLVCAWRGTNGNGTTTL 259
            NPPSTASTELYTTG RPSAEGTSL VCAW G  G+  T +
Sbjct:   17 NPPSTASTELYTTGARPSAEGTSLPVCAWGGRIGDDDTAV 56          
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Match: Hypothetical (protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z4P0_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 1.670e-7
Identity = 32/106 (30.19%), Postives = 58/106 (54.72%), Query Frame = 1
Query:    7 IYLLRFAYEGGASGERTLTENVQIPFSIDLAPLTAKPGTAASHKESSLYGLNGVVHHRGETIGRGHFTACVRLEGNQWQRYDDTTVANVALRNVRTEEAIILAYTR 324
            I+L RF  E  A G + + ++V++PF++D++P    P      ++SS+YGL G+V H G  +G GH+ A       +W  + D + +  +  +V  ++A +  Y R
Sbjct:  423 IHLKRF--EATARGFQKVGKHVRVPFTLDMSPFCIPPKPGDPSRQSSMYGLTGIVVHSGG-MGGGHYVAYTLRGPGRWYYFSDRSYSASSAPDVTKKQAYLCFYKR 525          
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Match: USP (domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S4K0_9FUNG)

HSP 1 Score: 57.0 bits (136), Expect = 1.080e-6
Identity = 31/107 (28.97%), Postives = 55/107 (51.40%), Query Frame = 1
Query:    7 IYLLRFAYEGGASGERTLTENVQIPFSIDLAPLTAKPGTAASHKESSLYGLNGVVHHRGETIGRGHFTACVRLEGNQWQRYDDTTVANVALRNVRTEEAIILAYTRQ 327
            ++L RF ++      R ++E +Q P  ID+AP  +         ++  Y L GV+ H G +   GH+ + V+    QW + DD  V   +L+ V +++A IL Y ++
Sbjct:  321 VHLKRFTFDLERGYMRKISERIQYPEVIDMAPYISVEEKQKLQGKTK-YRLYGVLVHLGHSCNSGHYYSYVKNSDGQWYQMDDEMVEKASLKEVLSQQAYILFYAQE 426          
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Match: calphotin-like (n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI002009186B)

HSP 1 Score: 55.5 bits (132), Expect = 4.040e-6
Identity = 29/89 (32.58%), Postives = 44/89 (49.44%), Query Frame = 1
Query:   58 LTENVQIPFSIDLAPLTAKPGT--AASHKESSLYGLNGVVHHRGETIGRGHFTACVRLEGNQWQRYDDTTVANVALRNVRTEEAIILAY 318
            + ++V  P  +DL P   +  T   +  K    Y L  ++ H GET   GH+ + +R+  N+W RYDDT +  V    V  + A IL Y
Sbjct: 1335 INKHVSFPPLLDLLPFAPRKVTFFTSIDKMQIYYELYAIIVHEGETPAAGHYYSFIRVNANEWYRYDDTQITAVDEEEVFKQMAYILFY 1423          
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Match: USP (domain-containing protein n=23 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZYS5_SALSN)

HSP 1 Score: 54.7 bits (130), Expect = 7.330e-6
Identity = 30/90 (33.33%), Postives = 45/90 (50.00%), Query Frame = 1
Query:   58 LTENVQIPFSIDLAPLTAKPGT---AASHKESSLYGLNGVVHHRGETIGRGHFTACVRLEGNQWQRYDDTTVANVALRNVRTEEAIILAY 318
            + ++V  P  +DL P T +  T    +  K    Y L  +V H GET   GH+ + +RL  N+W +YDD+ +  V    V  + A IL Y
Sbjct:  961 IKKHVSFPPQLDLKPFTPRKVTFPFTSVGKMHIYYELYAIVVHEGETPVAGHYYSIIRLNANEWYKYDDSRITAVDEEEVFKQMAYILFY 1050          
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=2 Tax=Dufourea novaeangliae TaxID=178035 RepID=A0A154P806_DUFNO)

HSP 1 Score: 53.1 bits (126), Expect = 2.490e-5
Identity = 40/113 (35.40%), Postives = 59/113 (52.21%), Query Frame = 1
Query:    1 VYIYLLRFAYEGGASGERTLTENVQIPFS-IDLAPLTAKPGTAA--SHKESSLYGLNGVVHHRGETIGRGHFTA-CVRLEGNQWQRYDDTTVANVALRNVRTEE--AIILAYT 321
            + I+L RFA  GG   +R     V  P + ++L P      T+A  S+  S  Y L  + +H G T+  GH+TA C     N+W +YDD TV  V++  VR++   A +L YT
Sbjct:  860 IVIHLNRFAESGGWLEKRNTA--VDFPLTGLNLKPYLVMDSTSATISNIRSYNYSLYAMSNHYG-TMEGGHYTAFCKNSNQNKWYKYDDQTVTEVSVNQVRSQNTSAYLLFYT 969          
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Match: USP (domain-containing protein n=9 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9B205_SALSN)

HSP 1 Score: 53.1 bits (126), Expect = 2.540e-5
Identity = 28/92 (30.43%), Postives = 45/92 (48.91%), Query Frame = 1
Query:   52 RTLTENVQIPFSIDLAPLTAKPGT---AASHKESSLYGLNGVVHHRGETIGRGHFTACVRLEGNQWQRYDDTTVANVALRNVRTEEAIILAY 318
            + + ++V  P  +DL P T +  T    +  K    Y L  ++ H GET   GH+ + +RL  N+W +YDD+ +       V  + A IL Y
Sbjct: 1134 KKIKKHVSFPPQLDLIPFTPRKVTFPFTSVDKMHLYYELYAIIVHEGETPVAGHYYSFIRLNANEWYKYDDSRITAADEEEVFKQMAYILFY 1225          
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Match: USP (domain-containing protein (Fragment) n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZW96_DICPU)

HSP 1 Score: 52.0 bits (123), Expect = 5.070e-5
Identity = 28/106 (26.42%), Postives = 55/106 (51.89%), Query Frame = 1
Query:    7 IYLLRFAYEGGASGERTLTENVQIPFSIDLAPLTAKPGTAASHKESSLYGLNGVVHHRGETIGRGHFTACVRLEGNQWQRYDDTTVANVALRNVRTEEAIILAYTR 324
            + + RF++     G+    +++Q   ++DL+P   +        + S+Y LN V+ H G++   GH+   V+     W + DD+ V+ V+L+ V   +A +L YT+
Sbjct:  231 VQIKRFSFLNSYGGKDN--KHIQFCQTLDLSPYMTQTN------DHSIYDLNSVLVHLGDSTNSGHYYCYVKGSNGVWYKMDDSMVSQVSLQTVLRSKAYMLFYTK 328          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
Similar8.490e-2550.45to deubiquitinating enzyme 3 n=1 Tax=Ectocarpus si... [more]
USP1.820e-2348.65domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.260e-975.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical1.670e-730.19protein n=1 Tax=Lotharella globosa TaxID=91324 Rep... [more]
USP1.080e-628.97domain-containing protein n=1 Tax=Mucor circinatus... [more]
calphotin-like4.040e-632.58n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI0020... [more]
USP7.330e-633.33domain-containing protein n=23 Tax=Salvia splenden... [more]
Ubiquitin2.490e-535.40carboxyl-terminal hydrolase n=2 Tax=Dufourea novae... [more]
USP2.540e-530.43domain-containing protein n=9 Tax=Salvia splendens... [more]
USP5.070e-526.42domain-containing protein (Fragment) n=1 Tax=Dicty... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1037contigEcto-sp9_F_contig1037:13988..15383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue7.7e-23
Seed eggNOG ortholog2880.D8LK32
KEGG koko:K11855
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1865@1,KOG1865@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size433
Cds size336
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1037.358.1prot_Ecto-sp9_F_contig1037.358.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1037 13988..15287 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928241.4884665-CDS-Ecto-sp9_F_contig1037:13987..140221622928241.4884665-CDS-Ecto-sp9_F_contig1037:13987..14022Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1037 13988..14022 +
1692277806.8211362-CDS-Ecto-sp9_F_contig1037:13987..140221692277806.8211362-CDS-Ecto-sp9_F_contig1037:13987..14022Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1037 13988..14022 +
1622928241.5066402-CDS-Ecto-sp9_F_contig1037:14534..146351622928241.5066402-CDS-Ecto-sp9_F_contig1037:14534..14635Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1037 14535..14635 +
1692277806.830635-CDS-Ecto-sp9_F_contig1037:14534..146351692277806.830635-CDS-Ecto-sp9_F_contig1037:14534..14635Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1037 14535..14635 +
1622928241.5229428-CDS-Ecto-sp9_F_contig1037:15087..152871622928241.5229428-CDS-Ecto-sp9_F_contig1037:15087..15287Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1037 15088..15287 +
1692277806.8382642-CDS-Ecto-sp9_F_contig1037:15087..152871692277806.8382642-CDS-Ecto-sp9_F_contig1037:15087..15287Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1037 15088..15287 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928241.536719-UTR-Ecto-sp9_F_contig1037:15287..153831622928241.536719-UTR-Ecto-sp9_F_contig1037:15287..15383Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1037 15288..15383 +
1692277806.8470774-UTR-Ecto-sp9_F_contig1037:15287..153831692277806.8470774-UTR-Ecto-sp9_F_contig1037:15287..15383Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1037 15288..15383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1037.358.1

>prot_Ecto-sp9_F_contig1037.358.1 ID=prot_Ecto-sp9_F_contig1037.358.1|Name=mRNA_Ecto-sp9_F_contig1037.358.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=112bp
VYIYLLRFAYEGGASGERTLTENVQIPFSIDLAPLTAKPGTAASHKESSL
YGLNGVVHHRGETIGRGHFTACVRLEGNQWQRYDDTTVANVALRNVRTEE
AIILAYTRQSG*
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mRNA from alignment at Ecto-sp9_F_contig1037:13988..15383+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1037.358.1 ID=mRNA_Ecto-sp9_F_contig1037.358.1|Name=mRNA_Ecto-sp9_F_contig1037.358.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1396bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1037:13988..15383+ (Ectocarpus species9 EcSCA_722f female)
GTATATATATACCTTCTGCGGTTCGCTTACGAGGGGTAAGCCGTACTTGA TCATGGTTGATGGACGTGTTTATGGGCAAACGGCAATTTTCGCTCTGGAG CGTGGTGCTTGTTTACCGACGGTGGCTCTTGGTACGTCAGATAGCTATGC TGCTTTTGCGCGACGAGGATCTATCATTGTCGGCATGGAAGGCCTCTACT CTGATGAACTCAAGGTCCAATGAAGTGGTGACCCTCCACGATAGGTTGGC AAGGTGTGGGCGAGGGCTTAGTGTATCAAGCGATGTGGGTCGGTTTGGCA AGGTATGAGGGTGAAACGAGGGGGGGGGGTCCAACTTCCCTTTCAGGATC TTGCATCTCTCACAGGGAGGATGGAATTCCCTCATGAACTCAAGGGTGGT CGGGCTTTTGCCGAGGGCCCTAATTTGCTATGCTGGATTGCTTGTACATT CAGATTCCTAGAAGTGTGACTCCTCTGGTCTCCATGTTATTTTTGTTTTG GACTTGATTTAAATACCTGTTTGTGCTCCTCCTTTCCTCATCGACAGCGG AGCAAGCGGCGAGAGGACGCTCACCGAAAATGTTCAAATCCCTTTTTCGA TTGACCTGGCGCCTTTGACCGCGAAGCCCGGCACAGCCGCGTCACACAGT AAGAAGCGTGATGGGGTTTGTAGATGATGATTTTGTGGATGGGGGTTGTT GTTGTTGTGGTCGGTTGCTGTGGATGTCGTCGGAATACGATGTTGTTCAC GAACGAGGGCACGAGTTCTGTGGAGTTCTGTGGCCGTTGTTGTCTTCGGA ACATATTCTGGCTCTACATGCAATATGACCCCCCCGTGATATGTACCGGT ATCTCGGTACTGACGTTTGTGGTGCTGTGCCTCAAGCTCATATATGTGAA CACCACACCTCGTTGGTGCGGCCCTTCAAGCAAGCTAGTGGTCGTGAATG GTGGACAACTTGTGTGCGGTAGAAGTCGCCTCACACGGTGCTCTACATCA GTGTATTTGTCGGGTCATTTAACAACTAAAAATGTCGCGTCACCTTCGTC TGTACGCTTCAACATTCCCTACCCCGCCGTGTTCTTGTCCTAATCCACAG AAGAATCCTCCCTCTACGGCCTCAACGGAGTTGTACACCACCGGGGAGAG ACCATCGGCCGAGGGCACTTCACTGCTTGTGTGCGCCTGGAGGGGAACCA ATGGCAACGGTACGACGACACTACCGTTGCCAATGTGGCTCTTCGGAATG TACGCACCGAGGAAGCCATTATCCTCGCCTACACTCGCCAATCGGGCTAG TCAACCAACTCTTCGCTCAGGAGTTGCACCTCAGCGACGACCAGTGACCT CGGCTCTTGTGTCGTACCTCGGTCGTAGGACCGGTGTTCCGTCGTC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1037:13988..15383+

>mRNA_Ecto-sp9_F_contig1037.358.1 ID=mRNA_Ecto-sp9_F_contig1037.358.1|Name=mRNA_Ecto-sp9_F_contig1037.358.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1037:13988..15383+ (Ectocarpus species9 EcSCA_722f female)
GTATATATATACCTTCTGCGGTTCGCTTACGAGGGGTATATATATACCTT
CTGCGGTTCGCTTACGAGGGCGGAGCAAGCGGCGAGAGGACGCTCACCGA
AAATGTTCAAATCCCTTTTTCGATTGACCTGGCGCCTTTGACCGCGAAGC
CCGGCACAGCCGCGTCACACACGGAGCAAGCGGCGAGAGGACGCTCACCG
AAAATGTTCAAATCCCTTTTTCGATTGACCTGGCGCCTTTGACCGCGAAG
CCCGGCACAGCCGCGTCACACAAAGAATCCTCCCTCTACGGCCTCAACGG
AGTTGTACACCACCGGGGAGAGACCATCGGCCGAGGGCACTTCACTGCTT
GTGTGCGCCTGGAGGGGAACCAATGGCAACGGTACGACGACACTACCGTT
GCCAATGTGGCTCTTCGGAATGTACGCACCGAGGAAGCCATTATCCTCGC
CTACACTCGCCAATCGGGCTAGAAGAATCCTCCCTCTACGGCCTCAACGG
AGTTGTACACCACCGGGGAGAGACCATCGGCCGAGGGCACTTCACTGCTT
GTGTGCGCCTGGAGGGGAACCAATGGCAACGGTACGACGACACTACCGTT
GCCAATGTGGCTCTTCGGAATGTACGCACCGAGGAAGCCATTATCCTCGC
CTACACTCGCCAATCGGGCTAG
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