mRNA_Ecto-sp9_F_contig10356.351.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10356.351.1
Unique NamemRNA_Ecto-sp9_F_contig10356.351.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig10356.351.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L369_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 7.460e-36
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 1
Query:    1 SARRFSLLHLAAFEGSVDTILLLLSAGASVNAQDLDGWTPLHYAARNEMGGEVVVRALVAAGAEVDKANHRGRT 222
            S  RFSLLHLAAFEGSVDTILLLLSAGASVNAQDLDGWTPLHYAARNEMGG+VVVRALVAAGAEVDKANHRGRT
Sbjct:   83 SGWRFSLLHLAAFEGSVDTILLLLSAGASVNAQDLDGWTPLHYAARNEMGGKVVVRALVAAGAEVDKANHRGRT 156          
BLAST of mRNA_Ecto-sp9_F_contig10356.351.1 vs.
Match: Ankyrin (repeat protein n=4 Tax=Histoplasma TaxID=5036 RepID=C0NPS0_AJECG)

HSP 1 Score: 55.8 bits (133), Expect = 2.550e-7
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 1
Query:   58 ILLLLSAGASVNAQDLDGWTPLHYAARNEMGG--EVVVRALVAAGAEVDKANHRGRT 222
            I LL+S GA VNA+DL G TPLHYAARN      E +V AL+AAGAE D  + +GRT
Sbjct:  536 IHLLISHGADVNARDLTGATPLHYAARNVESRYQERIVAALLAAGAEPDCKDAKGRT 592          
BLAST of mRNA_Ecto-sp9_F_contig10356.351.1 vs.
Match: Uncharacterized (protein n=1 Tax=Emergomyces pasteurianus Ep9510 TaxID=1447872 RepID=A0A1J9PGU3_9EURO)

HSP 1 Score: 55.1 bits (131), Expect = 4.760e-7
Identity = 33/57 (57.89%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   58 ILLLLSAGASVNAQDLDGWTPLHYAARN--EMGGEVVVRALVAAGAEVDKANHRGRT 222
            I LL S GA +NA+DL G TPLHYAARN      E +V AL+AAGAE D  + +GRT
Sbjct:  520 IHLLTSHGADINARDLTGATPLHYAARNVESRHQERIVAALLAAGAEPDCKDSKGRT 576          
BLAST of mRNA_Ecto-sp9_F_contig10356.351.1 vs.
Match: Uncharacterized (protein n=1 Tax=Blastomyces parvus TaxID=2060905 RepID=A0A2B7XKH4_9EURO)

HSP 1 Score: 54.7 bits (130), Expect = 6.510e-7
Identity = 33/57 (57.89%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   58 ILLLLSAGASVNAQDLDGWTPLHYAARNEMGG--EVVVRALVAAGAEVDKANHRGRT 222
            I LL S GA +NA+DL G TPLHYAARN      E +V AL+AAGAE D  + +GRT
Sbjct:  519 IHLLTSHGADINARDLTGATPLHYAARNVESRYQERIVTALLAAGAEPDCKDSKGRT 575          
BLAST of mRNA_Ecto-sp9_F_contig10356.351.1 vs.
Match: Uncharacterized (protein n=1 Tax=Emmonsia crescens TaxID=73230 RepID=A0A2B7Z8A2_9EURO)

HSP 1 Score: 54.3 bits (129), Expect = 8.890e-7
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 1
Query:   64 LLLSAGASVNAQDLDGWTPLHYAARN--EMGGEVVVRALVAAGAEVDKANHRGRT 222
            LL S GA +NA+DL G TPLHYAARN      E +V AL+AAGAE D  + +GRT
Sbjct:  494 LLTSHGADINARDLAGATPLHYAARNVESRHQERIVAALLAAGAEPDCKDFKGRT 548          
BLAST of mRNA_Ecto-sp9_F_contig10356.351.1 vs.
Match: Uncharacterized (protein n=4 Tax=Candidatus Synechococcus spongiarum TaxID=431041 RepID=A0A0G8ATC3_9SYNE)

HSP 1 Score: 51.2 bits (121), Expect = 9.690e-7
Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 1
Query:   40 EGSVDTILLLLSAGASVNAQDLDGWTPLHYAARNEMGGEVVVRALVAAGAEVDKANHRGRT 222
            E S D +   L  GA  NA+D DGWTPLH+AAR+    EVV +AL+ AGA+    +  GRT
Sbjct:    2 EASSDDVGRCLLEGAEPNARDEDGWTPLHFAARDSKTSEVV-QALLDAGADPSARDGYGRT 61          
BLAST of mRNA_Ecto-sp9_F_contig10356.351.1 vs.
Match: protein (phosphatase 1 regulatory subunit 12A-like n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193D60B0)

HSP 1 Score: 53.5 bits (127), Expect = 1.510e-6
Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   22 LHLAAFEGSVDTILLLLSAGASVNAQDLDGWTPLHYAARNEMGGEVVVRALVAAGAEVDKANHRGRT 222
            LH+AA +G +  + LLL  GA VNAQDLDGWTPLH AA      +   + L     ++D  N+ G+T
Sbjct:   89 LHVAAAKGYIKVMELLLEGGADVNAQDLDGWTPLHAAAH--WNQKDAAQLLTKHNCQMDMKNYVGQT 153          
BLAST of mRNA_Ecto-sp9_F_contig10356.351.1 vs.
Match: ANK_REP_REGION (domain-containing protein n=1 Tax=Globodera pallida TaxID=36090 RepID=A0A183CEN0_GLOPA)

HSP 1 Score: 53.5 bits (127), Expect = 1.610e-6
Identity = 32/67 (47.76%), Postives = 38/67 (56.72%), Query Frame = 1
Query:   22 LHLAAFEGSVDTILLLLSAGASVNAQDLDGWTPLHYAARNEMGGEVVVRALVAAGAEVDKANHRGRT 222
            LH+AA +G    I +L  AGA VNAQD +GWTPLH AA    G     R L+  GA +D   H G T
Sbjct:  225 LHVAASKGYNKLIGMLSRAGADVNAQDFEGWTPLHAAAH--WGERDACRILMENGANLDALTHTGHT 289          
BLAST of mRNA_Ecto-sp9_F_contig10356.351.1 vs.
Match: Uncharacterized (protein n=4 Tax=Paracoccidioides TaxID=38946 RepID=C1G5C5_PARBD)

HSP 1 Score: 53.5 bits (127), Expect = 1.670e-6
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 1
Query:   58 ILLLLSAGASVNAQDLDGWTPLHYAARN--EMGGEVVVRALVAAGAEVDKANHRGRT 222
            I LL S GA +NA+DL G TPLHYAARN      E +V AL+AAGAE D  +  GRT
Sbjct:  536 INLLTSHGADINARDLRGATPLHYAARNVESRHQERIVAALLAAGAEPDCKDFSGRT 592          
BLAST of mRNA_Ecto-sp9_F_contig10356.351.1 vs.
Match: PRKG1_interact (domain-containing protein n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A3R7ME92_PENVA)

HSP 1 Score: 53.5 bits (127), Expect = 1.680e-6
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 1
Query:   22 LHLAAFEGSVDTILLLLSAGASVNAQDLDGWTPLHYAARNEMGGEVVVRALVAAGAEVDKANHRGRT 222
            LH+A+ +G +  + LLL AG+ +NAQDLDGWTPLH AA    G    V  L    A++D  N  G++
Sbjct:  210 LHVASAKGYIKVMSLLLEAGSDINAQDLDGWTPLHAAAH--WGQREAVEILAENMADMDVRNFVGQS 274          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10356.351.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Protein7.460e-3695.95kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
Ankyrin2.550e-759.65repeat protein n=4 Tax=Histoplasma TaxID=5036 RepI... [more]
Uncharacterized4.760e-757.89protein n=1 Tax=Emergomyces pasteurianus Ep9510 Ta... [more]
Uncharacterized6.510e-757.89protein n=1 Tax=Blastomyces parvus TaxID=2060905 R... [more]
Uncharacterized8.890e-758.18protein n=1 Tax=Emmonsia crescens TaxID=73230 RepI... [more]
Uncharacterized9.690e-749.18protein n=4 Tax=Candidatus Synechococcus spongiaru... [more]
protein1.510e-644.78phosphatase 1 regulatory subunit 12A-like n=1 Tax=... [more]
ANK_REP_REGION1.610e-647.76domain-containing protein n=1 Tax=Globodera pallid... [more]
Uncharacterized1.670e-657.89protein n=4 Tax=Paracoccidioides TaxID=38946 RepID... [more]
PRKG1_interact1.680e-644.78domain-containing protein n=1 Tax=Penaeus vannamei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10356contigEcto-sp9_F_contig10356:4147..4368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928239.7374163-CDS-Ecto-sp9_F_contig10356:4146..43681622928239.7374163-CDS-Ecto-sp9_F_contig10356:4146..4368Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10356 4147..4368 +
1692277806.4752138-CDS-Ecto-sp9_F_contig10356:4146..43681692277806.4752138-CDS-Ecto-sp9_F_contig10356:4146..4368Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10356 4147..4368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10356.351.1prot_Ecto-sp9_F_contig10356.351.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10356 4147..4368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10356.351.1

>prot_Ecto-sp9_F_contig10356.351.1 ID=prot_Ecto-sp9_F_contig10356.351.1|Name=mRNA_Ecto-sp9_F_contig10356.351.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=74bp
SARRFSLLHLAAFEGSVDTILLLLSAGASVNAQDLDGWTPLHYAARNEMG
GEVVVRALVAAGAEVDKANHRGRT
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mRNA from alignment at Ecto-sp9_F_contig10356:4147..4368+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10356.351.1 ID=mRNA_Ecto-sp9_F_contig10356.351.1|Name=mRNA_Ecto-sp9_F_contig10356.351.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=222bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10356:4147..4368+ (Ectocarpus species9 EcSCA_722f female)
TCTGCCAGGCGTTTCTCTTTGCTGCACCTCGCCGCCTTCGAGGGATCCGT TGACACCATATTGCTCCTGCTATCCGCGGGGGCCTCCGTCAACGCCCAAG ACCTCGACGGCTGGACACCGTTGCACTATGCAGCGCGGAACGAGATGGGG GGGGAGGTCGTCGTACGAGCACTCGTCGCCGCGGGGGCGGAGGTCGACAA AGCGAATCACCGCGGCCGGACG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10356:4147..4368+

>mRNA_Ecto-sp9_F_contig10356.351.1 ID=mRNA_Ecto-sp9_F_contig10356.351.1|Name=mRNA_Ecto-sp9_F_contig10356.351.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10356:4147..4368+ (Ectocarpus species9 EcSCA_722f female)
TCTGCCAGGCGTTTCTCTTTGCTGCACCTCGCCGCCTTCGAGGGATCCGT
TGACACCATATTGCTCCTGCTATCCGCGGGGGCCTCCGTCAACGCCCAAG
ACCTCGACGGCTGGACACCGTTGCACTATGCAGCGCGGAACGAGATGGGG
GGGGAGGTCGTCGTACGAGCACTCGTCGCCGCGGGGGCGGAGGTCGACAA
AGCGAATCACCGCGGCCGGACGTCTGCCAGGCGTTTCTCTTTGCTGCACC
TCGCCGCCTTCGAGGGATCCGTTGACACCATATTGCTCCTGCTATCCGCG
GGGGCCTCCGTCAACGCCCAAGACCTCGACGGCTGGACACCGTTGCACTA
TGCAGCGCGGAACGAGATGGGGGGGGAGGTCGTCGTACGAGCACTCGTCG
CCGCGGGGGCGGAGGTCGACAAAGCGAATCACCGCGGCCGGACG
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