mRNA_Ecto-sp9_F_contig10355.350.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10355.350.1 vs.
Match: Imm (downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 430 bits (1105), Expect = 5.050e-152 Identity = 205/208 (98.56%), Postives = 207/208 (99.52%), Query Frame = 1
Query: 1 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSS 624
MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPM GTSGSGYKVRVWDIHDEEDADCSDEFYL+ASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS+
Sbjct: 2 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSN 209
BLAST of mRNA_Ecto-sp9_F_contig10355.350.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 427 bits (1097), Expect = 1.980e-150 Identity = 203/207 (98.07%), Postives = 205/207 (99.03%), Query Frame = 1
Query: 1 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 621
M RTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYL+ASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGS VDRFAIDLYRADG+GDCGTYVQSICDKPTIGCKDS
Sbjct: 1 MTRTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDS 207
BLAST of mRNA_Ecto-sp9_F_contig10355.350.1 vs.
Match: EsV-1-163 (n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 334 bits (857), Expect = 4.840e-114 Identity = 163/207 (78.74%), Postives = 173/207 (83.57%), Query Frame = 1
Query: 1 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 621
MARTGFVALAC MLGAANAL+V TPS L V+ADRTYTVEWTG S RFEIDLY+CGSMCMED CGDWVTALCPYGE+GCPDNEGDYDIVMPEPM G S SGYKVRV D+ DE+ DCSD FYLMAS +AP G E G L VTSPA GD A EYTVEFDYDNGVGS+VDRF+IDLY ADGDGDCGTYV SICDKP+IGCKDS
Sbjct: 1 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADS-GRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDS 206
BLAST of mRNA_Ecto-sp9_F_contig10355.350.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 325 bits (832), Expect = 3.310e-110 Identity = 152/207 (73.43%), Postives = 174/207 (84.06%), Query Frame = 1
Query: 1 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 621
M RTGFVALACGMLG A+AL+V TP+ G V++ R YTVEW+GT S+ RFEIDLYYC SMCMED+CG+WVTALCPYGEDGCPDNEGDYDIVMPEPM GTSGSGYKVRV D+ DE+ +DCSDEFYLMA ++APS D GP + VTSP++GD A EYTVEFDYDNG+GS V RFAIDLY A G GDCGT++ ++CDKPTIGCKDS
Sbjct: 2 MVRTGFVALACGMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDS 208
BLAST of mRNA_Ecto-sp9_F_contig10355.350.1 vs.
Match: EsV-1-163 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 317 bits (811), Expect = 9.250e-107 Identity = 148/195 (75.90%), Postives = 167/195 (85.64%), Query Frame = 1
Query: 37 MLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 621
MLGAA+AL+V TP++G V+A R YTVEWTGT S+NR+EIDLYYCGSMCMED+CGDWVTALCPYGEDGCPDNEGDYDIVMPEPM GTSGSGYKVRV D+ D++ DCSDEFYLMA +EAPS GD GP + VTSP+SGD A EYTVEFDYDNG+GS V RFAIDLY A G GDCGT++ ++CDKPTIGCKDS
Sbjct: 1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDS 195
BLAST of mRNA_Ecto-sp9_F_contig10355.350.1 vs.
Match: EsV-1-163 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 288 bits (736), Expect = 1.150e-95 Identity = 146/208 (70.19%), Postives = 168/208 (80.77%), Query Frame = 1
Query: 1 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYR-ADGDGDCGTYVQSICDKPTIGCKDS 621
MART F ALA GMLGAANAL+V +P+ G++VIADRTYTVEWTGTS D+RFEIDLYYCGS CMED+CGDWVTALCPYG DGCPD +GDYDIVMPEPM GTS SGYKV V D +DE CS +F L+AS++AP+ G E G +L VTSP+ GD A G YTVE+DY+NG+GS DRFAIDLY G GDCGTYV ++CDKP+IGC DS
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGTS-DSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAG-EVGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDS 205
BLAST of mRNA_Ecto-sp9_F_contig10355.350.1 vs.
Match: Imm (upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 287 bits (734), Expect = 2.170e-95 Identity = 143/207 (69.08%), Postives = 165/207 (79.71%), Query Frame = 1
Query: 1 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 621
MART F ALA GMLGAANAL+V +P+ G V+AD YTVEWTG +S R++IDLYYCGS+CMED+CGDWVTALCPYG+DGCPD +GDYD+VMPEPM GTS SGYKV V D DE D CS +F L+AS+EAP D G + VTSP+ GD A GEYTVEFDYDNG+GS V+RFAIDLY + G GDCGTYV +ICDKP+IGCKDS
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGATS-GRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDM-GAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDS 204
BLAST of mRNA_Ecto-sp9_F_contig10355.350.1 vs.
Match: GPI-anchored (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 271 bits (693), Expect = 3.950e-89 Identity = 135/207 (65.22%), Postives = 159/207 (76.81%), Query Frame = 1
Query: 1 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 621
MART F A+A GML AANAL+V +P G++V+ADR YTVEWTGT++ RFEIDLYYC S CM+D CGDWVTALCPYG DGCPD+ GDYDI+MPEPM GTS SGYKV V + DE D CSD+F L+AS +AP G E G +L VTSP+ GD A YTVE+DY+NG GS DRFA+DLY G GDCGTYV ++CD+P+IGC DS
Sbjct: 1 MARTAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTT-GRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAG-EMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDS 204
BLAST of mRNA_Ecto-sp9_F_contig10355.350.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE) HSP 1 Score: 234 bits (598), Expect = 1.000e-74 Identity = 123/207 (59.42%), Postives = 143/207 (69.08%), Query Frame = 1
Query: 1 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 621
MART F ALA GMLGA NAL+V++P+ G ++A + TVEWTGTSS RF+IDLYYCGS+CMED+CGDWVTALCPYG+DGCPD +GDYD+VMPEPM GTS SGYKV V D DE D CS EF L+AS+ FD+DNG GS V+RF+IDLY + G GDCGTYV SICDK +IGCKDS
Sbjct: 1 MARTAFAALAFGMLGAVNALEVTSPAAGDMIVAASSTTVEWTGTSS-GRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDS 204
BLAST of mRNA_Ecto-sp9_F_contig10355.350.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE) HSP 1 Score: 236 bits (601), Expect = 3.510e-72 Identity = 110/146 (75.34%), Postives = 122/146 (83.56%), Query Frame = 1
Query: 184 MEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 621
+ED+CG+WVTALCPYG +GCPDNEGDYDIVMPEPM GTSGSGYKVRV D+ +DADCSDEFYLMAS+EAP VG D P L VTSP++GD A GEYTVEFDYDNGVGSRVDRF IDLY G GDCGT+V ++CDK IGCKDS
Sbjct: 12 VEDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDS 157 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10355.350.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10355.350.1 >prot_Ecto-sp9_F_contig10355.350.1 ID=prot_Ecto-sp9_F_contig10355.350.1|Name=mRNA_Ecto-sp9_F_contig10355.350.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=208bp MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFback to top mRNA from alignment at Ecto-sp9_F_contig10355:505..2897- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10355.350.1 ID=mRNA_Ecto-sp9_F_contig10355.350.1|Name=mRNA_Ecto-sp9_F_contig10355.350.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2393bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10355:505..2897- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10355:505..2897- >mRNA_Ecto-sp9_F_contig10355.350.1 ID=mRNA_Ecto-sp9_F_contig10355.350.1|Name=mRNA_Ecto-sp9_F_contig10355.350.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1248bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10355:505..2897- (Ectocarpus species9 EcSCA_722f female)back to top |