mRNA_Ecto-sp9_F_contig10351.349.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10351.349.1 vs.
Match: WD-40 (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB83_ECTSI) HSP 1 Score: 189 bits (479), Expect = 1.140e-53 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1
Query: 1 VLELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDIAPDALEELIIVDCDLGIVDGQ 285
VLELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDIAPDALEELIIVDCDLGIVDGQ
Sbjct: 612 VLELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDIAPDALEELIIVDCDLGIVDGQ 706
BLAST of mRNA_Ecto-sp9_F_contig10351.349.1 vs.
Match: UDENN (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB05_9PHAE) HSP 1 Score: 177 bits (449), Expect = 1.260e-49 Identity = 93/106 (87.74%), Postives = 94/106 (88.68%), Query Frame = 1
Query: 1 VLELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDIAPDALEE-----------LIIVDCDLGIVDGQ 285
VLELFAA+LQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDIAPDAL E LIIVDCDLGIVDGQ
Sbjct: 639 VLELFAAVLQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDIAPDALGEVTHHMMLXXXXLIIVDCDLGIVDGQ 744
BLAST of mRNA_Ecto-sp9_F_contig10351.349.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RME7_9STRA) HSP 1 Score: 100 bits (248), Expect = 1.610e-22 Identity = 46/90 (51.11%), Postives = 65/90 (72.22%), Query Frame = 1
Query: 7 ELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDIAPDALEELIIVDCDLGIV 276
EL + L E ++L HSA A LA V E V LMYPLQW + YVPVLP ++E +ESPQPFI+G+H+DWL ++ P+ LE++++ D D G++
Sbjct: 284 ELLSYALGERKLLFHSADSAALAPVTEAVCTLMYPLQWIHTYVPVLPRSMLEVLESPQPFIIGIHSDWLPEVRPEVLEDILVFDVDRGVL 373
BLAST of mRNA_Ecto-sp9_F_contig10351.349.1 vs.
Match: UDENN (domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4E6_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 1.460e-16 Identity = 40/93 (43.01%), Postives = 63/93 (67.74%), Query Frame = 1
Query: 1 VLELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDIAPDAL-EELIIVDCDLGIV 276
++++ A L E RI++HS A+L VAE + L+YP +W + YVPVLP L++++++P P+ILG+H+ WL +L E L++VDCD G V
Sbjct: 581 IIDIVALTLLEYRIVIHSTNMAVLCPVAEAICTLLYPFRWQHPYVPVLPRYLLDYLQAPLPYILGLHSSWLPMSMETSLPEHLVLVDCDCGCV 673
BLAST of mRNA_Ecto-sp9_F_contig10351.349.1 vs.
Match: UDENN (domain-containing protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YZQ8_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 8.990e-16 Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = 1
Query: 31 EGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDIAPDAL-EELIIVDCDLGIV 276
E RI++HS + +LL + E + ALMYP +WP+ YVP+LP L E+V++P P+ILGVH+ WLS + E L++VD D G V
Sbjct: 294 EYRIVVHSTQLSLLCPITETIKALMYPFRWPHPYVPMLPRILSEYVQAPLPYILGVHSAWLSSLFEAGKPEHLVLVDADRGTV 376
BLAST of mRNA_Ecto-sp9_F_contig10351.349.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TW42_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.280e-15 Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = 1
Query: 31 EGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDIAPDAL-EELIIVDCDLGIV 276
E RI++HS + +LL + E + ALMYP +WP+ YVP+LP L E+V++P P+ILGVH+ WLS + E L++VD D G +
Sbjct: 526 EYRIVVHSTQLSLLCPITETIKALMYPFRWPHPYVPMLPRILSEYVQAPLPYILGVHSAWLSSLFEAGKPEHLVLVDADRGTI 608
BLAST of mRNA_Ecto-sp9_F_contig10351.349.1 vs.
Match: UDENN (domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCP4_FISSO) HSP 1 Score: 80.5 bits (197), Expect = 1.300e-15 Identity = 42/90 (46.67%), Postives = 60/90 (66.67%), Query Frame = 1
Query: 10 LFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDIAPDALEELIIVDCDLGIVD 279
L AA+L E +ILLHS A L VAE V AL+YP QW YVPVLP ++E +E+P P++LG+ + + I P LE++++V+ D G+ D
Sbjct: 1007 LLAALLTESKILLHSDDVANLCLVAEVVTALIYPFQWSLPYVPVLPAAMMEFIEAPMPYLLGIPSCNMKHIDPSVLEDVVVVNIDQGLGD 1096
BLAST of mRNA_Ecto-sp9_F_contig10351.349.1 vs.
Match: Uncharacterized (protein AlNc14C53G4127 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WBT6_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 1.740e-15 Identity = 44/97 (45.36%), Postives = 68/97 (70.10%), Query Frame = 1
Query: 1 VLELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWL-SDIAPDALEE-LIIVDCDLGIVDGQ 285
+L LFAA+L E R+L S+ ++L V E + ALMYPL WP+ Y+PVLP+ +++++E P PFI GV D + + I + EE ++I+D D+GIV+G+
Sbjct: 930 ILVLFAAVLLECRVLFMSSHISVLMKVGESIRALMYPLLWPHVYLPVLPSRMLQYLECPTPFIFGVLKDSVDASILTELTEEDILILDLDMGIVEGR 1026
BLAST of mRNA_Ecto-sp9_F_contig10351.349.1 vs.
Match: Uncharacterized (protein AlNc14C183G8266 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W1U9_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 3.290e-15 Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = 1
Query: 25 LQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDIAPDAL--EELIIVDCDLGIV 276
L E RI++HS+ A+L VAE + L+YP +W + YVPVLP L++++++P P+ILG+H+ WL + DA E L++VDCD G V
Sbjct: 616 LLEYRIVIHSSNMAVLCPVAEALCTLLYPFRWQHPYVPVLPRYLLDYLQAPLPYILGLHSSWLP-LMMDASRPEHLVLVDCDRGCV 700
BLAST of mRNA_Ecto-sp9_F_contig10351.349.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PC09_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 9.320e-14 Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 10 LFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLPNCLIEHVESPQPFILGVHTDWLSDIAPDALEELIIVDCD 264
+ AA+L E ++LLHS + LA V E V AL+YP W YVPVLP ++E VE+P +I+GV T ++ I D L +++++D D
Sbjct: 6 ILAAVLTESKVLLHSNDSSNLAMVGEVVNALIYPFVWALPYVPVLPREMLEFVEAPLSYIIGVPTCMMNSINADQLTDVVVIDLD 90 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10351.349.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10351.349.1 >prot_Ecto-sp9_F_contig10351.349.1 ID=prot_Ecto-sp9_F_contig10351.349.1|Name=mRNA_Ecto-sp9_F_contig10351.349.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=95bp VLELFAAILQEGRILLHSAKPALLAAVAEGVFALMYPLQWPYAYVPVLPNback to top mRNA from alignment at Ecto-sp9_F_contig10351:1292..2591- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10351.349.1 ID=mRNA_Ecto-sp9_F_contig10351.349.1|Name=mRNA_Ecto-sp9_F_contig10351.349.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1300bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10351:1292..2591- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10351:1292..2591- >mRNA_Ecto-sp9_F_contig10351.349.1 ID=mRNA_Ecto-sp9_F_contig10351.349.1|Name=mRNA_Ecto-sp9_F_contig10351.349.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10351:1292..2591- (Ectocarpus species9 EcSCA_722f female)back to top |