mRNA_Ecto-sp9_F_contig10343.345.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10343.345.1
Unique NamemRNA_Ecto-sp9_F_contig10343.345.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10343.345.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIE8_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 4.700e-44
Identity = 73/79 (92.41%), Postives = 73/79 (92.41%), Query Frame = 1 
Query:    1 MVDKAHVAAERRTVVVGTAPPLEDVLSRAYTERPFDLDSFLAYAKKIFFAENLAFLEEVSGSRWCSSRTPCHSGSMRTV 237
            MVDKAHVAAERRTVVV TAPPLEDVLSRAYTERPFDLDSFLAYAKK FFAENL FLEEVSGSRWCS RTPCH GS RTV
Sbjct:    1 MVDKAHVAAERRTVVVDTAPPLEDVLSRAYTERPFDLDSFLAYAKKNFFAENLTFLEEVSGSRWCSLRTPCHPGSTRTV 79
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10343.345.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.700e-4492.41protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10343contigEcto-sp9_F_contig10343:2451..2714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_003930.1
Exons1
Model size265
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928238.5808861-CDS-Ecto-sp9_F_contig10343:2450..27141622928238.5808861-CDS-Ecto-sp9_F_contig10343:2450..2714Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10343 2451..2714 -
1692277806.0630774-CDS-Ecto-sp9_F_contig10343:2450..27141692277806.0630774-CDS-Ecto-sp9_F_contig10343:2450..2714Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10343 2451..2714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10343.345.1prot_Ecto-sp9_F_contig10343.345.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10343 2451..2714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10343.345.1

>prot_Ecto-sp9_F_contig10343.345.1 ID=prot_Ecto-sp9_F_contig10343.345.1|Name=mRNA_Ecto-sp9_F_contig10343.345.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=88bp
MVDKAHVAAERRTVVVGTAPPLEDVLSRAYTERPFDLDSFLAYAKKIFFA
ENLAFLEEVSGSRWCSSRTPCHSGSMRTVQSSCTPISG
back to top

mRNA from alignment at Ecto-sp9_F_contig10343:2451..2714-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10343.345.1 ID=mRNA_Ecto-sp9_F_contig10343.345.1|Name=mRNA_Ecto-sp9_F_contig10343.345.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=264bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10343:2451..2714- (Ectocarpus species9 EcSCA_722f female)
ATGGTGGACAAGGCTCATGTGGCGGCCGAGCGTAGAACCGTCGTCGTGGG
CACCGCGCCTCCTCTGGAAGACGTGCTATCCCGCGCGTACACAGAAAGGC
CCTTCGACCTGGATTCGTTCTTGGCCTATGCGAAGAAGATTTTTTTTGCT
GAAAACCTGGCGTTTCTTGAAGAGGTGAGTGGATCCCGGTGGTGTTCGTC
GCGTACTCCCTGTCACTCCGGTAGTATGCGTACGGTACAATCGTCTTGTA
CACCTATCTCGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10343:2451..2714-

>mRNA_Ecto-sp9_F_contig10343.345.1 ID=mRNA_Ecto-sp9_F_contig10343.345.1|Name=mRNA_Ecto-sp9_F_contig10343.345.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10343:2451..2714- (Ectocarpus species9 EcSCA_722f female)
ATGGTGGACAAGGCTCATGTGGCGGCCGAGCGTAGAACCGTCGTCGTGGG
CACCGCGCCTCCTCTGGAAGACGTGCTATCCCGCGCGTACACAGAAAGGC
CCTTCGACCTGGATTCGTTCTTGGCCTATGCGAAGAAGATTTTTTTTGCT
GAAAACCTGGCGTTTCTTGAAGAGGTGAGTGGATCCCGGTGGTGTTCGTC
GCGTACTCCCTGTCACTCCGGTAGTATGCGTACGGTACAATCGTCTTGTA
CACCTATCTCGGGGATGGTGGACAAGGCTCATGTGGCGGCCGAGCGTAGA
ACCGTCGTCGTGGGCACCGCGCCTCCTCTGGAAGACGTGCTATCCCGCGC
GTACACAGAAAGGCCCTTCGACCTGGATTCGTTCTTGGCCTATGCGAAGA
AGATTTTTTTTGCTGAAAACCTGGCGTTTCTTGAAGAGGTGAGTGGATCC
CGGTGGTGTTCGTCGCGTACTCCCTGTCACTCCGGTAGTATGCGTACGGT
ACAATCGTCTTGTACACCTATCTCGGGG
back to top