mRNA_Ecto-sp9_F_contig1034.339.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1034.339.1
Unique NamemRNA_Ecto-sp9_F_contig1034.339.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1034.339.1 vs.
Match: DNA (double-strand break repair rad50 ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ73_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 2.080e-64
Identity = 119/127 (93.70%), Postives = 121/127 (95.28%), Query Frame = -1 
Query:    1 PTLYALASSDHRRRGPAIPGNWGGACTAPIVAPPARGSTRATRRGLGGFSTSTDMKAAKDDTATRRPTTPEDKPTMSSAAIVAGTRVRLLDTGRLGTVVGKAGGWWKVDLLESWGGXXXXXTASGKA 381
            PTLYALASS HRR+GPAIPGNWGGACTAPIVAPPARGSTRA RRGLGGFSTST+MKAAKDDT TRRP TPEDKPTMSSAAIVAGTRVRLLDTGRLGTVVGKAGGWWKVDLLESWG XXXXX ASGKA
Sbjct:   84 PTLYALASSGHRRQGPAIPGNWGGACTAPIVAPPARGSTRAARRGLGGFSTSTEMKAAKDDTTTRRPKTPEDKPTMSSAAIVAGTRVRLLDTGRLGTVVGKAGGWWKVDLLESWGXXXXXXXASGKA 210
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BLAST of mRNA_Ecto-sp9_F_contig1034.339.1 vs.
Match: ABC (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB20_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.410e-54
Identity = 110/125 (88.00%), Postives = 112/125 (89.60%), Query Frame = -1 
Query:    1 LYALASSDHRRRGPAIPGNWGGACTAPIVAPPARGSTRATRRGLGGFSTSTDMKAAKDDTATRRPTTPEDKPTMSSAAIVAGTRVRLLDTGRLGTVVGKAGGWWKVDLLESWGGXXXXXTASGKA 375
            L ALASS HRRRGP IP NWGGACTAPIVAPPARGST A RRG G FS+ST+MKAAKDDTATRR TTPEDKPTMSSAAIVAGTRVRLLDTGRLGTVVGKAGGWWKVDLLES   XXXXXTA GKA
Sbjct:   86 LSALASSGHRRRGPVIPCNWGGACTAPIVAPPARGSTWAARRGPGDFSSSTEMKAAKDDTATRRRTTPEDKPTMSSAAIVAGTRVRLLDTGRLGTVVGKAGGWWKVDLLESGXXXXXXXTACGKA 210
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1034.339.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
DNA2.080e-6493.70double-strand break repair rad50 ATPase n=1 Tax=Ec... [more]
ABC1.410e-5488.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1034contigEcto-sp9_F_contig1034:3494..3875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928237.4801393-CDS-Ecto-sp9_F_contig1034:3493..38741622928237.4801393-CDS-Ecto-sp9_F_contig1034:3493..3874Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 3494..3874 +
1692277805.5191672-CDS-Ecto-sp9_F_contig1034:3493..38741692277805.5191672-CDS-Ecto-sp9_F_contig1034:3493..3874Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 3494..3874 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1034.339.1prot_Ecto-sp9_F_contig1034.339.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1034 3494..3874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1034.339.1

>prot_Ecto-sp9_F_contig1034.339.1 ID=prot_Ecto-sp9_F_contig1034.339.1|Name=mRNA_Ecto-sp9_F_contig1034.339.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=127bp
CLSAGCPAASSPSPTLQQVYFPPASGLPHDRAETAGVKQAHASSGDDGSA
AHGGLIFRRRRSSGGGVIFGGLHIGAGRKAAEPSASRPRAPPRWRRDNRC
RTSPPPVARNRRPSSSVVRGCKGIEGR
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mRNA from alignment at Ecto-sp9_F_contig1034:3494..3875+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1034.339.1 ID=mRNA_Ecto-sp9_F_contig1034.339.1|Name=mRNA_Ecto-sp9_F_contig1034.339.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=382bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1034:3494..3875+ (Ectocarpus species9 EcSCA_722f female)
TGCCTTTCCGCTGGCTGTCCCGCCGCCTCCTCCCCCTCCCCAACTCTCCA
GCAGGTCTACTTTCCACCAGCCTCCGGCCTTCCCCACGACCGTGCCGAGA
CGGCCGGTGTCAAGCAAGCGCACGCGAGTTCCGGCGACGATGGCAGCGCT
GCTCATGGTGGGCTTATCTTCCGGCGTCGTCGGTCTTCTGGTGGCGGTGT
CATCTTTGGCGGCCTTCATATCGGTGCTGGTAGAAAAGCCGCCGAGCCCT
CGGCGAGTCGCCCGCGTGCTCCCCCGCGCTGGCGGCGCGACAATCGGTGC
CGTACAAGCCCCCCCCCAGTTGCCAGGAATCGCCGGCCCTCGTCGTCGGT
GGTCCGAGGATGCAAGGGCATAGAGGGTAGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1034:3494..3875+

>mRNA_Ecto-sp9_F_contig1034.339.1 ID=mRNA_Ecto-sp9_F_contig1034.339.1|Name=mRNA_Ecto-sp9_F_contig1034.339.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1034:3494..3875+ (Ectocarpus species9 EcSCA_722f female)
TGCCTTTCCGCTGGCTGTCCCGCCGCCTCCTCCCCCTCCCCAACTCTCCA
GCAGGTCTACTTTCCACCAGCCTCCGGCCTTCCCCACGACCGTGCCGAGA
CGGCCGGTGTCAAGCAAGCGCACGCGAGTTCCGGCGACGATGGCAGCGCT
GCTCATGGTGGGCTTATCTTCCGGCGTCGTCGGTCTTCTGGTGGCGGTGT
CATCTTTGGCGGCCTTCATATCGGTGCTGGTAGAAAAGCCGCCGAGCCCT
CGGCGAGTCGCCCGCGTGCTCCCCCGCGCTGGCGGCGCGACAATCGGTGC
CGTACAAGCCCCCCCCCAGTTGCCAGGAATCGCCGGCCCTCGTCGTCGGT
GGTCCGAGGATGCAAGGGCATAGAGGGTAGGTGCCTTTCCGCTGGCTGTC
CCGCCGCCTCCTCCCCCTCCCCAACTCTCCAGCAGGTCTACTTTCCACCA
GCCTCCGGCCTTCCCCACGACCGTGCCGAGACGGCCGGTGTCAAGCAAGC
GCACGCGAGTTCCGGCGACGATGGCAGCGCTGCTCATGGTGGGCTTATCT
TCCGGCGTCGTCGGTCTTCTGGTGGCGGTGTCATCTTTGGCGGCCTTCAT
ATCGGTGCTGGTAGAAAAGCCGCCGAGCCCTCGGCGAGTCGCCCGCGTGC
TCCCCCGCGCTGGCGGCGCGACAATCGGTGCCGTACAAGCCCCCCCCCAG
TTGCCAGGAATCGCCGGCCCTCGTCGTCGGTGGTCCGAGGATGCAAGGGC
ATAGAGGGTAGG
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