mRNA_Ecto-sp9_F_contig1034.338.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1034.338.1
Unique NamemRNA_Ecto-sp9_F_contig1034.338.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Match: ABC (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB20_9PHAE)

HSP 1 Score: 425 bits (1092), Expect = 3.820e-135
Identity = 212/229 (92.58%), Postives = 212/229 (92.58%), Query Frame = 3
Query:    3 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGAGHPSTCYQTFYASLACRAIFCHVDIKGAAMNDDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF 689
            VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGA                RAIFCHVDIKGAAMN DVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF
Sbjct:  400 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGA----------------RAIFCHVDIKGAAMNGDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF 612          
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Match: DNA (double-strand break repair rad50 ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ73_ECTSI)

HSP 1 Score: 422 bits (1085), Expect = 3.340e-134
Identity = 210/229 (91.70%), Postives = 211/229 (92.14%), Query Frame = 3
Query:    3 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGAGHPSTCYQTFYASLACRAIFCHVDIKGAAMNDDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF 689
            VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVME LATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGS+EARGAG                AIFCHVDIKGAAMN DVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF
Sbjct:  400 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMEHLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSDEARGAG----------------AIFCHVDIKGAAMNGDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF 612          
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Match: Metallophos (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ6_9STRA)

HSP 1 Score: 234 bits (596), Expect = 4.130e-67
Identity = 120/240 (50.00%), Postives = 155/240 (64.58%), Query Frame = 3
Query:    3 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQ-----------VTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGAGHPSTCYQTFYASLACRAIFCHVDIKGAAMNDDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF 689
            VLDRV  EA  R   G+ FLGDFWH RG+L+VDLL  V+ RLA W  PVV++PGNHDQ            T  G  H+LTPL++AF  P  A+V+S+PTLFLGALW+PH R+   +E +L                   A+ A RA+FCHVD +GAAMND + S +GI  SAFP     +SGH H+PH++GG  G +RYVGSPYQT+L+E+GQ K L++LDA  W  ++ V + +GRRFF
Sbjct:  291 VLDRVRAEAEARPGAGVLFLGDFWHLRGTLRVDLLNAVLARLAAWRAPVVLLPGNHDQCQKQVVGTCLCTTPAGAEHSLTPLRYAFR-PGHAVVISQPTLFLGALWLPHCRDQRALERVLALP----------------AAAAARAVFCHVDARGAAMNDGIYSRTGISPSAFPAGARVYSGHFHRPHSVGG--GRVRYVGSPYQTSLAEAGQRKELLILDAADWSVRDAVEICVGRRFF 511          
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Match: Uncharacterized (protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SQT7_AUXPR)

HSP 1 Score: 202 bits (514), Expect = 5.910e-62
Identity = 111/229 (48.47%), Postives = 143/229 (62.45%), Query Frame = 3
Query:    3 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGAGHPSTCYQTFYASLACRAIFCHVDIKGAAMNDDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF 689
            VLD V+ EA+ R+A GI FLGDFWH RG+L V+ L   + RL+ WT+P +M+ GNHDQV+LGG  HALTPL  A   P    V+  P L  GALW+P+RR   E+   L     R AG           S A RA+F HVD+ GA++ND   +  G+P SAFP  +  ++GH H+PHT+ G    I YVGSPYQ +  E+GQ K L+VLD +TW  +E +PLDIG R F
Sbjct:    3 VLDLVHAEAVSRNA-GILFLGDFWHVRGALPVETLNSAVLRLSQWTQPTIMLVGNHDQVSLGGLDHALTPL--AACSP-HIHVMEHPMLHAGALWLPYRRARGELLAAL-----RCAGE----------SEAVRAVFAHVDVAGASLNDAFQARDGVPPSAFPRGLEVYTGHYHRPHTVPGTS--IHYVGSPYQVSRGEAGQGKRLLVLDGDTWRVREEIPLDIGPRHF 210          
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1A4_9STRA)

HSP 1 Score: 199 bits (507), Expect = 6.840e-58
Identity = 114/250 (45.60%), Postives = 147/250 (58.80%), Query Frame = 3
Query:    3 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGAGHPSTCYQTFYASLACRAIFCHVDIKGAAMNDDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSK------------------ALIVLD---AETWEEKELVPLDIGRRFF 689
            VL  +++ A+ R   GI FLGDFWH R SL V+LL  V++ L TWT PV+MIPGNHDQVTLGG +H+L PLQ AF    Q L++ EP + +GALW+P+RR+   +   L +    GA  P               IFCH D+KGA MND++ S  G+  ++FP N+P +SGH HKPHT+      +RYVGSPYQT+LSE+GQ K                  A  V D    ETW+E E    DIGR+ F
Sbjct:   35 VLISIHQAAVARQG-GIIFLGDFWHVRRSLDVELLNRVLDVLRTWTCPVIMIPGNHDQVTLGGKVHSLKPLQSAF-QLEQILIIDEPAISMGALWVPYRRDLNVLRAALRA----GADSPGVSM-----------IFCHADVKGAYMNDNMRSKEGLDIASFPKNIPIYSGHFHKPHTICQGRTTLRYVGSPYQTSLSEAGQEKYFYCVQRGNHGVVAGVEAAASVADYEQPETWKEVERWVCDIGRKIF 267          
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Match: Metallophos (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAR7_9STRA)

HSP 1 Score: 206 bits (523), Expect = 2.560e-57
Identity = 110/252 (43.65%), Postives = 153/252 (60.71%), Query Frame = 3
Query:    3 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAF-----------TDPM--QALVLSEPTLFLGALWIPHRRNNTEMEGLLGS-----EEARGAGHPSTCYQTFYASLACRAIFCHVDIKGAAMNDDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVL-----DAETWEEKELVPLDIGRRFF 689
            VL+RV+ EA  R A G+ FLGDF+H RG+++VDLL  +M  L TWT+PVV+IPGNHDQVTL G +HALTPL FA              P+  QALV+S+PTLFL ALW+P+ R++      L +     E+  G+  P              A+FCHVD++GA  ND+ +S  G+    FP ++P +SGH H+PH +      + YVGSPYQ +L+E+GQ K L++L       + W E   + +D+GRR+F
Sbjct:  141 VLERVHREARARGA-GVIFLGDFFHIRGAIRVDLLNKIMAELGTWTQPVVLIPGNHDQVTLDGAVHALTPLGFAVGTSSEQGLRGHAGPLRGQALVVSQPTLFLNALWLPYARDSASTRAFLAAYRDPIEQEAGSSPPPV-----------GAVFCHVDVRGAPTNDNTASRRGLNPGIFPSHIPTYSGHFHRPHRVPASS--VTYVGSPYQVSLAEAGQRKRLLLLRRPLGPGDPWMEVSDIAIDVGRRYF 378          
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Match: ABC (transporter (ISS) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0B3_9CHLO)

HSP 1 Score: 205 bits (522), Expect = 3.490e-57
Identity = 109/231 (47.19%), Postives = 145/231 (62.77%), Query Frame = 3
Query:    3 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGAGHPSTCYQTFYAS-LACRAIFCHVDIKGAAMNDDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAET-WEEKELVPLDIGRRFF 689
            VL+RV+EEA  R A GI FLGDFWH RG+L V+ L  V+ RLA W +P +M+PGNHDQV+LGG +HALTPL  A  +P        P LFLGALW+P+RR+ + +E  L +                     A +A+F H DI GA MN+   +H G+P S FPP++P ++GH HKPHT+ G    I Y+GSPYQ + +E+GQ K L++LD    WE  E + LD+G R+F
Sbjct:   13 VLERVHEEAAARGA-GILFLGDFWHTRGALPVEPLNEVIARLAGWRQPTLMLPGNHDQVSLGGEVHALTPL--AAANPA-IHAFDGPALFLGALWLPYRRDRSRLEAALAAXXXXXXXXXXXXXXXXXXXHAALQAVFAHTDILGALMNEAYQAHDGLPPSLFPPDIPTYTGHYHKPHTVPGSR--ITYIGSPYQVSRAEAGQQKRLLLLDRSAGWEVAEELNLDVGPRYF 237          
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Match: SMC_N (domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KW39_AUXPR)

HSP 1 Score: 202 bits (514), Expect = 1.540e-56
Identity = 111/229 (48.47%), Postives = 143/229 (62.45%), Query Frame = 3
Query:    3 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGAGHPSTCYQTFYASLACRAIFCHVDIKGAAMNDDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF 689
            VLD V+ EA+ R+A GI FLGDFWH RG+L V+ L   + RL+ WT+P +M+ GNHDQV+LGG  HALTPL  A   P    V+  P L  GALW+P+RR   E+   L     R AG           S A RA+F HVD+ GA++ND   +  G+P SAFP  +  ++GH H+PHT+ G    I YVGSPYQ +  E+GQ K L+VLD +TW  +E +PLDIG R F
Sbjct:    3 VLDLVHAEAVSRNA-GILFLGDFWHVRGALPVETLNSAVLRLSQWTQPTIMLVGNHDQVSLGGLDHALTPL--AACSP-HIHVMEHPMLHAGALWLPYRRARGELLAAL-----RCAGE----------SEAVRAVFAHVDVAGASLNDAFQARDGVPPSAFPRGLEVYTGHYHRPHTVPGTS--IHYVGSPYQVSRGEAGQGKRLLVLDGDTWRVREEIPLDIGPRHF 210          
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EAV1_9RHOD)

HSP 1 Score: 197 bits (500), Expect = 2.730e-56
Identity = 106/230 (46.09%), Postives = 148/230 (64.35%), Query Frame = 3
Query:    3 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGAGHPSTCYQTFYASLACRAIFCHVDIKGAAMNDDVSSHSGI-PRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF 689
            VL  V+E+A++R A G+ FLGDFWH+RG L V+ L  ++E  + WT+P++MI GNHDQV++ G ++AL P+  A  +  + +V S+PTLFL ALW+P RRN+ E+   LGS  +  A                +AIFCH+D+ GA MN+   S  G  P   F P+   +SGH HKP T+ G    IRY+GSPYQ +LSE+GQSKAL+VLD++ W  K+ +P+D G R F
Sbjct:  113 VLRYVHEQALRREA-GVVFLGDFWHSRGDLPVEPLNLILEEFSRWTQPMIMISGNHDQVSIDGELNALEPIALAAGED-RVMVFSKPTLFLDALWLPFRRNDAELLKALGSTHSANA----------------KAIFCHIDVYGADMNNGHVSVLGTKPNRLFHPDTVVYSGHFHKPQTVPGTG--IRYLGSPYQISLSEAGQSKALVVLDSQ-WTVKQEIPIDFGPRHF 321          
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K5S0_FISSO)

HSP 1 Score: 202 bits (513), Expect = 4.970e-56
Identity = 115/240 (47.92%), Postives = 148/240 (61.67%), Query Frame = 3
Query:    3 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAF----------TDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGAGHPSTCYQTFYASLACRAIFCHVDIKGAAMNDDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDA-ETWEEKELVPLDIGRRFF 689
            VLD V+E A++R+A G+ FLGD+WH RG+L+VD L  V+  L  WT P+VMIPGNHDQVTLGG +H LT L+ ++          T P   LV S PT FL AL+IPH R+N  ME LL S  ++ A                 A+F H D  GA MND + S  GI  S FPP+ P +SGH HKPH +  +   + Y+GSPYQ +LSE+ Q KALIV+DA + W   E +P+DIGR+ F
Sbjct:  147 VLDHVHELAIERNA-GVLFLGDWWHHRGTLRVDCLNAVLSSLKNWTVPMVMIPGNHDQVTLGGHIHGLTALENSYQVRDKTGSGKTYP-GPLVFSYPTKFLDALFIPHVRDNAIMESLLQSSLSKSAD----------------ALFVHADTSGAYMNDLIVSRDGISISLFPPDKPIYSGHFHKPHVVKSKRNRLEYLGSPYQVSLSEAHQQKALIVVDAADKWNCIERIPIDIGRKHF 368          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ABC3.820e-13592.58protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
DNA3.340e-13491.70double-strand break repair rad50 ATPase n=1 Tax=Ec... [more]
Metallophos4.130e-6750.00domain-containing protein n=1 Tax=Tribonema minus ... [more]
Uncharacterized5.910e-6248.47protein n=2 Tax=Auxenochlorella protothecoides Tax... [more]
Hypothetical6.840e-5845.60protein (Fragment) n=1 Tax=Spumella elongata TaxID... [more]
Metallophos2.560e-5743.65domain-containing protein n=2 Tax=Monodopsidaceae ... [more]
ABC3.490e-5747.19transporter (ISS) n=1 Tax=Micractinium conductrix ... [more]
SMC_N1.540e-5648.47domain-containing protein n=1 Tax=Auxenochlorella ... [more]
Hypothetical2.730e-5646.09protein n=1 Tax=Rhodosorus marinus TaxID=101924 Re... [more]
Uncharacterized4.970e-5647.92protein n=1 Tax=Fistulifera solaris TaxID=1519565 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1034contigEcto-sp9_F_contig1034:480..2662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score407.5
Seed ortholog evalue3.9e-111
Seed eggNOG ortholog2880.D7FQ73
EggNOG OGs28INY@1,2QQZZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size689
Cds size660
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1034.338.1prot_Ecto-sp9_F_contig1034.338.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1034 480..2633 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928237.5383222-CDS-Ecto-sp9_F_contig1034:479..5841622928237.5383222-CDS-Ecto-sp9_F_contig1034:479..584Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 480..584 -
1692277805.5298722-CDS-Ecto-sp9_F_contig1034:479..5841692277805.5298722-CDS-Ecto-sp9_F_contig1034:479..584Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 480..584 -
1622928237.5601177-CDS-Ecto-sp9_F_contig1034:896..11251622928237.5601177-CDS-Ecto-sp9_F_contig1034:896..1125Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 897..1125 -
1692277805.5520344-CDS-Ecto-sp9_F_contig1034:896..11251692277805.5520344-CDS-Ecto-sp9_F_contig1034:896..1125Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 897..1125 -
1622928237.582076-CDS-Ecto-sp9_F_contig1034:1428..15411622928237.582076-CDS-Ecto-sp9_F_contig1034:1428..1541Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 1429..1541 -
1692277805.5651212-CDS-Ecto-sp9_F_contig1034:1428..15411692277805.5651212-CDS-Ecto-sp9_F_contig1034:1428..1541Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 1429..1541 -
1622928237.5987904-CDS-Ecto-sp9_F_contig1034:2079..22261622928237.5987904-CDS-Ecto-sp9_F_contig1034:2079..2226Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 2080..2226 -
1692277805.5774083-CDS-Ecto-sp9_F_contig1034:2079..22261692277805.5774083-CDS-Ecto-sp9_F_contig1034:2079..2226Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 2080..2226 -
1622928237.6217992-CDS-Ecto-sp9_F_contig1034:2567..26331622928237.6217992-CDS-Ecto-sp9_F_contig1034:2567..2633Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 2568..2633 -
1692277805.6023662-CDS-Ecto-sp9_F_contig1034:2567..26331692277805.6023662-CDS-Ecto-sp9_F_contig1034:2567..2633Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1034 2568..2633 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928237.6367853-UTR-Ecto-sp9_F_contig1034:2633..26621622928237.6367853-UTR-Ecto-sp9_F_contig1034:2633..2662Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1034 2634..2662 -
1692277805.6128752-UTR-Ecto-sp9_F_contig1034:2633..26621692277805.6128752-UTR-Ecto-sp9_F_contig1034:2633..2662Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1034 2634..2662 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1034.338.1

>prot_Ecto-sp9_F_contig1034.338.1 ID=prot_Ecto-sp9_F_contig1034.338.1|Name=mRNA_Ecto-sp9_F_contig1034.338.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=220bp
MKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQV
TLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLL
GSEEARGAGHPSTCYQTFYASLACRAIFCHVDIKGAAMNDDVSSHSGIPR
SAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVL
DAETWEEKELVPLDIGRRFF
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mRNA from alignment at Ecto-sp9_F_contig1034:480..2662-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1034.338.1 ID=mRNA_Ecto-sp9_F_contig1034.338.1|Name=mRNA_Ecto-sp9_F_contig1034.338.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2183bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1034:480..2662- (Ectocarpus species9 EcSCA_722f female)
AGGTGCTTGATCGCGTGAACGAGGAGGCAATGAAGCGCTCGGCTTGCGGG ATCGCGTTTCTGGGCGACTTTTGGCACGCCAGAGGTTCTCTTAAGGTGAT GCCGAGCGAGTTCATACATTTTTCTCTGGTTGGTGCACCCGTTCAACGAC GCTTGGTGGAACAGACTCACAAGATTTTTGCTGTAGAGCTATGTAAACGT ACGGTGTCTTGGTCCCGTGTTCAACCATTGACAGTGGGGTTGACCCTCAA GGTATTCATGGGGCTCCACAAGTAGTTTATGTTGGACTGTGAAGTCTATA ATAGTGGATTCCACGACACCGGACAGTTCTGAGAGTGCAGGCACTTGCCT TGTGTACTGAAATACACGGAAGCCTTACCCAAACCCCTCTCACGCCGCCA ACAACATGCCATGTCGAAACCGAACAACTCCGAAAGGTGGACCTTCTGGT TCCGGTGATGGAACGCCTGGCGACGTGGACGCGGCCGGTAGTGATGATCC CCGGCAACCATGACCAAGTCACCCTCGGCGGCGGGATGCACGCCCTTACC CCGCTGCAGTTCGCCTTCACCGATCCGATGCAGGTAGGTTAATAGCACGG CGGTTTTTGAGGCCGGTCGGCGGTGTTGAGGGGTGGCTCGGCCAGAAAGC TCATGGTCTTTGTCGCGCTCATTTCTAAGCTTGGACGAGGCTCATCGCTC ATCGATTGTTTCTATGCGTATTGGGCGGTAGATGCCGACTGGTGCGAGAG CGCATCCAGATACCCTTGCGCGGGCTGGGGTGGCTGTGGATGACCTGTGG CGGGGTACAGCAGGGCGGCAGTATTTCAAATGAGCGCATGACGGTACTCA GGGTTAGGACACGCTGCACCGTCAACAAAATTTACTCGGACACAGCACCT CGAAGAAAAAACGCAAAAGGGCCGCGTGGAATGCCTGCTGTCTCACGTTG GTTCCAACCTGAGTACCTTGCCTACACCTTTGACATGGCCGATTCGAAGA TTACACCCGTTACTCCCGTTCGTTGCTACGTGCTTTGATCGCGCGGGTTG TGTAGTCCCAACCACCCTCCACCCTCCCCCTACACACTTTTGTTTCGTGT GGTTTGGCATCCATCGCACAGGCGCTGGTGCTGTCGGAGCCAACGCTCTT CCTCGGCGCTCTCTGGATACCCCACCGGAGGAACAACACCGAGATGGAAG GTCTCCTGGGTAGCGAGGAGGCCCGTGGCGCGGGGTGAGTGCCTCTCTTT TTTCTGTGTTTGATCATCCTTGTGACCGCTGTGCCGCCAAGGGGCACTGC AATCGAGTGGCACCTCTTTGTACGTACATACGCTTGTTGTCGGAGCGCGT TGTGTGTGTATCTGTGTGTGCTTTTCTTCCACGCTGCTACTGCTGCTGCT GCTGCTGCTGCTGCTGCTGCTGCTGCAAGTTACCGCCTTCCGGAGGATTT GCGTATTTTTCGCGGCTAGACAAAAAACAACCGCCGCCGTCCCAGAAAAC AATACGACTTACCTCGGTACACCCCCAAGAAGACGAGACACCCGAGTACG TGCTACCAAACGTTTTATGCCTCCCTCGCGTGCAGGGCGATATTCTGCCA CGTGGACATCAAGGGAGCGGCCATGAACGACGACGTCTCGTCACACTCCG GCATCCCGAGGTCGGCCTTCCCGCCGAACGTGCCGGCGTTCTCGGGACAC GTCCACAAGCCCCACACGCTCGGCGGGCGAGACGGCTTCATCCGCTACGT CGGCTCCCCGTACCAGGTGTGCGTGGGTGTGCCACCGCTGTATAGAGGCG CTACGTTAACTGTGGCATCCCGAGTCGCGTTGCTTTGCTCTGCTTTGAGG TCTTGTCGTGCCGGTTGCTGCTTGCTGAATTTTTGGTGTGGAGGTCTGTT TCGTTTATTTTTTCGTTCGCACCATGACCTTTTTGCTGTCGCACCTCATG CCTTCCCGTGGCACATGTAGGCTCAACGTTAAATGGCGCGTGAAGTGGGT GGTGAGTGGTGCACGATGCTATATCATAGCGTATCATGATTATTCTCTCT CCACATTTCTTCCTATCTGGACGAACAGACCGCCCTGTCGGAGTCCGGGC AATCGAAGGCGCTCATAGTGTTGGACGCCGAAACCTGGGAAGAGAAAGAA CTCGTCCCGCTCGACATTGGCAGGCGATTTTTC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1034:480..2662-

>mRNA_Ecto-sp9_F_contig1034.338.1 ID=mRNA_Ecto-sp9_F_contig1034.338.1|Name=mRNA_Ecto-sp9_F_contig1034.338.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1320bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1034:480..2662- (Ectocarpus species9 EcSCA_722f female)
ATGAAGCGCTCGGCTTGCGGGATCGCGTTTCTGGGCGACTTTTGGCACGC
CAGAGGTTCTCTTAAGATGAAGCGCTCGGCTTGCGGGATCGCGTTTCTGG
GCGACTTTTGGCACGCCAGAGGTTCTCTTAAGGTGGACCTTCTGGTTCCG
GTGATGGAACGCCTGGCGACGTGGACGCGGCCGGTAGTGATGATCCCCGG
CAACCATGACCAAGTCACCCTCGGCGGCGGGATGCACGCCCTTACCCCGC
TGCAGTTCGCCTTCACCGATCCGATGCAGGTGGACCTTCTGGTTCCGGTG
ATGGAACGCCTGGCGACGTGGACGCGGCCGGTAGTGATGATCCCCGGCAA
CCATGACCAAGTCACCCTCGGCGGCGGGATGCACGCCCTTACCCCGCTGC
AGTTCGCCTTCACCGATCCGATGCAGGCGCTGGTGCTGTCGGAGCCAACG
CTCTTCCTCGGCGCTCTCTGGATACCCCACCGGAGGAACAACACCGAGAT
GGAAGGTCTCCTGGGTAGCGAGGAGGCCCGTGGCGCGGGGCGCTGGTGCT
GTCGGAGCCAACGCTCTTCCTCGGCGCTCTCTGGATACCCCACCGGAGGA
ACAACACCGAGATGGAAGGTCTCCTGGGTAGCGAGGAGGCCCGTGGCGCG
GGACACCCGAGTACGTGCTACCAAACGTTTTATGCCTCCCTCGCGTGCAG
GGCGATATTCTGCCACGTGGACATCAAGGGAGCGGCCATGAACGACGACG
TCTCGTCACACTCCGGCATCCCGAGGTCGGCCTTCCCGCCGAACGTGCCG
GCGTTCTCGGGACACGTCCACAAGCCCCACACGCTCGGCGGGCGAGACGG
CTTCATCCGCTACGTCGGCTCCCCGTACCAGACACCCGAGTACGTGCTAC
CAAACGTTTTATGCCTCCCTCGCGTGCAGGGCGATATTCTGCCACGTGGA
CATCAAGGGAGCGGCCATGAACGACGACGTCTCGTCACACTCCGGCATCC
CGAGGTCGGCCTTCCCGCCGAACGTGCCGGCGTTCTCGGGACACGTCCAC
AAGCCCCACACGCTCGGCGGGCGAGACGGCTTCATCCGCTACGTCGGCTC
CCCGTACCAGACCGCCCTGTCGGAGTCCGGGCAATCGAAGGCGCTCATAG
TGTTGGACGCCGAAACCTGGGAAGAGAAAGAACTCGTCCCGCTCGACATT
GGCAGGCGATTTTTCACCGCCCTGTCGGAGTCCGGGCAATCGAAGGCGCT
CATAGTGTTGGACGCCGAAACCTGGGAAGAGAAAGAACTCGTCCCGCTCG
ACATTGGCAGGCGATTTTTC
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