mRNA_Ecto-sp9_F_contig1034.338.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Match: ABC (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB20_9PHAE) HSP 1 Score: 425 bits (1092), Expect = 3.820e-135 Identity = 212/229 (92.58%), Postives = 212/229 (92.58%), Query Frame = 3
Query: 3 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGAGHPSTCYQTFYASLACRAIFCHVDIKGAAMNDDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF 689
VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGA RAIFCHVDIKGAAMN DVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF
Sbjct: 400 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGA----------------RAIFCHVDIKGAAMNGDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF 612
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Match: DNA (double-strand break repair rad50 ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ73_ECTSI) HSP 1 Score: 422 bits (1085), Expect = 3.340e-134 Identity = 210/229 (91.70%), Postives = 211/229 (92.14%), Query Frame = 3
Query: 3 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGAGHPSTCYQTFYASLACRAIFCHVDIKGAAMNDDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF 689
VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVME LATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGS+EARGAG AIFCHVDIKGAAMN DVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF
Sbjct: 400 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMEHLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSDEARGAG----------------AIFCHVDIKGAAMNGDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF 612
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Match: Metallophos (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ6_9STRA) HSP 1 Score: 234 bits (596), Expect = 4.130e-67 Identity = 120/240 (50.00%), Postives = 155/240 (64.58%), Query Frame = 3
Query: 3 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQ-----------VTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGAGHPSTCYQTFYASLACRAIFCHVDIKGAAMNDDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF 689
VLDRV EA R G+ FLGDFWH RG+L+VDLL V+ RLA W PVV++PGNHDQ T G H+LTPL++AF P A+V+S+PTLFLGALW+PH R+ +E +L A+ A RA+FCHVD +GAAMND + S +GI SAFP +SGH H+PH++GG G +RYVGSPYQT+L+E+GQ K L++LDA W ++ V + +GRRFF
Sbjct: 291 VLDRVRAEAEARPGAGVLFLGDFWHLRGTLRVDLLNAVLARLAAWRAPVVLLPGNHDQCQKQVVGTCLCTTPAGAEHSLTPLRYAFR-PGHAVVISQPTLFLGALWLPHCRDQRALERVLALP----------------AAAAARAVFCHVDARGAAMNDGIYSRTGISPSAFPAGARVYSGHFHRPHSVGG--GRVRYVGSPYQTSLAEAGQRKELLILDAADWSVRDAVEICVGRRFF 511
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Match: Uncharacterized (protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SQT7_AUXPR) HSP 1 Score: 202 bits (514), Expect = 5.910e-62 Identity = 111/229 (48.47%), Postives = 143/229 (62.45%), Query Frame = 3
Query: 3 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGAGHPSTCYQTFYASLACRAIFCHVDIKGAAMNDDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF 689
VLD V+ EA+ R+A GI FLGDFWH RG+L V+ L + RL+ WT+P +M+ GNHDQV+LGG HALTPL A P V+ P L GALW+P+RR E+ L R AG S A RA+F HVD+ GA++ND + G+P SAFP + ++GH H+PHT+ G I YVGSPYQ + E+GQ K L+VLD +TW +E +PLDIG R F
Sbjct: 3 VLDLVHAEAVSRNA-GILFLGDFWHVRGALPVETLNSAVLRLSQWTQPTIMLVGNHDQVSLGGLDHALTPL--AACSP-HIHVMEHPMLHAGALWLPYRRARGELLAAL-----RCAGE----------SEAVRAVFAHVDVAGASLNDAFQARDGVPPSAFPRGLEVYTGHYHRPHTVPGTS--IHYVGSPYQVSRGEAGQGKRLLVLDGDTWRVREEIPLDIGPRHF 210
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1A4_9STRA) HSP 1 Score: 199 bits (507), Expect = 6.840e-58 Identity = 114/250 (45.60%), Postives = 147/250 (58.80%), Query Frame = 3
Query: 3 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGAGHPSTCYQTFYASLACRAIFCHVDIKGAAMNDDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSK------------------ALIVLD---AETWEEKELVPLDIGRRFF 689
VL +++ A+ R GI FLGDFWH R SL V+LL V++ L TWT PV+MIPGNHDQVTLGG +H+L PLQ AF Q L++ EP + +GALW+P+RR+ + L + GA P IFCH D+KGA MND++ S G+ ++FP N+P +SGH HKPHT+ +RYVGSPYQT+LSE+GQ K A V D ETW+E E DIGR+ F
Sbjct: 35 VLISIHQAAVARQG-GIIFLGDFWHVRRSLDVELLNRVLDVLRTWTCPVIMIPGNHDQVTLGGKVHSLKPLQSAF-QLEQILIIDEPAISMGALWVPYRRDLNVLRAALRA----GADSPGVSM-----------IFCHADVKGAYMNDNMRSKEGLDIASFPKNIPIYSGHFHKPHTICQGRTTLRYVGSPYQTSLSEAGQEKYFYCVQRGNHGVVAGVEAAASVADYEQPETWKEVERWVCDIGRKIF 267
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Match: Metallophos (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAR7_9STRA) HSP 1 Score: 206 bits (523), Expect = 2.560e-57 Identity = 110/252 (43.65%), Postives = 153/252 (60.71%), Query Frame = 3
Query: 3 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAF-----------TDPM--QALVLSEPTLFLGALWIPHRRNNTEMEGLLGS-----EEARGAGHPSTCYQTFYASLACRAIFCHVDIKGAAMNDDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVL-----DAETWEEKELVPLDIGRRFF 689
VL+RV+ EA R A G+ FLGDF+H RG+++VDLL +M L TWT+PVV+IPGNHDQVTL G +HALTPL FA P+ QALV+S+PTLFL ALW+P+ R++ L + E+ G+ P A+FCHVD++GA ND+ +S G+ FP ++P +SGH H+PH + + YVGSPYQ +L+E+GQ K L++L + W E + +D+GRR+F
Sbjct: 141 VLERVHREARARGA-GVIFLGDFFHIRGAIRVDLLNKIMAELGTWTQPVVLIPGNHDQVTLDGAVHALTPLGFAVGTSSEQGLRGHAGPLRGQALVVSQPTLFLNALWLPYARDSASTRAFLAAYRDPIEQEAGSSPPPV-----------GAVFCHVDVRGAPTNDNTASRRGLNPGIFPSHIPTYSGHFHRPHRVPASS--VTYVGSPYQVSLAEAGQRKRLLLLRRPLGPGDPWMEVSDIAIDVGRRYF 378
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Match: ABC (transporter (ISS) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0B3_9CHLO) HSP 1 Score: 205 bits (522), Expect = 3.490e-57 Identity = 109/231 (47.19%), Postives = 145/231 (62.77%), Query Frame = 3
Query: 3 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGAGHPSTCYQTFYAS-LACRAIFCHVDIKGAAMNDDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAET-WEEKELVPLDIGRRFF 689
VL+RV+EEA R A GI FLGDFWH RG+L V+ L V+ RLA W +P +M+PGNHDQV+LGG +HALTPL A +P P LFLGALW+P+RR+ + +E L + A +A+F H DI GA MN+ +H G+P S FPP++P ++GH HKPHT+ G I Y+GSPYQ + +E+GQ K L++LD WE E + LD+G R+F
Sbjct: 13 VLERVHEEAAARGA-GILFLGDFWHTRGALPVEPLNEVIARLAGWRQPTLMLPGNHDQVSLGGEVHALTPL--AAANPA-IHAFDGPALFLGALWLPYRRDRSRLEAALAAXXXXXXXXXXXXXXXXXXXHAALQAVFAHTDILGALMNEAYQAHDGLPPSLFPPDIPTYTGHYHKPHTVPGSR--ITYIGSPYQVSRAEAGQQKRLLLLDRSAGWEVAEELNLDVGPRYF 237
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Match: SMC_N (domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KW39_AUXPR) HSP 1 Score: 202 bits (514), Expect = 1.540e-56 Identity = 111/229 (48.47%), Postives = 143/229 (62.45%), Query Frame = 3
Query: 3 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGAGHPSTCYQTFYASLACRAIFCHVDIKGAAMNDDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF 689
VLD V+ EA+ R+A GI FLGDFWH RG+L V+ L + RL+ WT+P +M+ GNHDQV+LGG HALTPL A P V+ P L GALW+P+RR E+ L R AG S A RA+F HVD+ GA++ND + G+P SAFP + ++GH H+PHT+ G I YVGSPYQ + E+GQ K L+VLD +TW +E +PLDIG R F
Sbjct: 3 VLDLVHAEAVSRNA-GILFLGDFWHVRGALPVETLNSAVLRLSQWTQPTIMLVGNHDQVSLGGLDHALTPL--AACSP-HIHVMEHPMLHAGALWLPYRRARGELLAAL-----RCAGE----------SEAVRAVFAHVDVAGASLNDAFQARDGVPPSAFPRGLEVYTGHYHRPHTVPGTS--IHYVGSPYQVSRGEAGQGKRLLVLDGDTWRVREEIPLDIGPRHF 210
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EAV1_9RHOD) HSP 1 Score: 197 bits (500), Expect = 2.730e-56 Identity = 106/230 (46.09%), Postives = 148/230 (64.35%), Query Frame = 3
Query: 3 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAFTDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGAGHPSTCYQTFYASLACRAIFCHVDIKGAAMNDDVSSHSGI-PRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF 689
VL V+E+A++R A G+ FLGDFWH+RG L V+ L ++E + WT+P++MI GNHDQV++ G ++AL P+ A + + +V S+PTLFL ALW+P RRN+ E+ LGS + A +AIFCH+D+ GA MN+ S G P F P+ +SGH HKP T+ G IRY+GSPYQ +LSE+GQSKAL+VLD++ W K+ +P+D G R F
Sbjct: 113 VLRYVHEQALRREA-GVVFLGDFWHSRGDLPVEPLNLILEEFSRWTQPMIMISGNHDQVSIDGELNALEPIALAAGED-RVMVFSKPTLFLDALWLPFRRNDAELLKALGSTHSANA----------------KAIFCHIDVYGADMNNGHVSVLGTKPNRLFHPDTVVYSGHFHKPQTVPGTG--IRYLGSPYQISLSEAGQSKALVVLDSQ-WTVKQEIPIDFGPRHF 321
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K5S0_FISSO) HSP 1 Score: 202 bits (513), Expect = 4.970e-56 Identity = 115/240 (47.92%), Postives = 148/240 (61.67%), Query Frame = 3
Query: 3 VLDRVNEEAMKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVTLGGGMHALTPLQFAF----------TDPMQALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGAGHPSTCYQTFYASLACRAIFCHVDIKGAAMNDDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDA-ETWEEKELVPLDIGRRFF 689
VLD V+E A++R+A G+ FLGD+WH RG+L+VD L V+ L WT P+VMIPGNHDQVTLGG +H LT L+ ++ T P LV S PT FL AL+IPH R+N ME LL S ++ A A+F H D GA MND + S GI S FPP+ P +SGH HKPH + + + Y+GSPYQ +LSE+ Q KALIV+DA + W E +P+DIGR+ F
Sbjct: 147 VLDHVHELAIERNA-GVLFLGDWWHHRGTLRVDCLNAVLSSLKNWTVPMVMIPGNHDQVTLGGHIHGLTALENSYQVRDKTGSGKTYP-GPLVFSYPTKFLDALFIPHVRDNAIMESLLQSSLSKSAD----------------ALFVHADTSGAYMNDLIVSRDGISISLFPPDKPIYSGHFHKPHVVKSKRNRLEYLGSPYQVSLSEAHQQKALIVVDAADKWNCIERIPIDIGRKHF 368 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1034.338.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1034.338.1 >prot_Ecto-sp9_F_contig1034.338.1 ID=prot_Ecto-sp9_F_contig1034.338.1|Name=mRNA_Ecto-sp9_F_contig1034.338.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=220bp MKRSACGIAFLGDFWHARGSLKVDLLVPVMERLATWTRPVVMIPGNHDQVback to top mRNA from alignment at Ecto-sp9_F_contig1034:480..2662- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1034.338.1 ID=mRNA_Ecto-sp9_F_contig1034.338.1|Name=mRNA_Ecto-sp9_F_contig1034.338.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2183bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1034:480..2662- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1034:480..2662- >mRNA_Ecto-sp9_F_contig1034.338.1 ID=mRNA_Ecto-sp9_F_contig1034.338.1|Name=mRNA_Ecto-sp9_F_contig1034.338.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1320bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1034:480..2662- (Ectocarpus species9 EcSCA_722f female)back to top |