mRNA_Ecto-sp9_F_contig1033.335.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1033.335.1
Unique NamemRNA_Ecto-sp9_F_contig1033.335.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1033.335.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT81_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 4.500e-68
Identity = 124/133 (93.23%), Postives = 127/133 (95.49%), Query Frame = 1 
Query:    1 AFEASSSSDSSSELDSDSGDDDFAAREKDKHKQRLVERYADLTDAMMDWGVEAAQALLVEVTKTAAKHRTISAWTNAVLEPGRDNSSKRGGGLKESQQARQDRATLLQTEKAVLHEVVEALGGWEAAVFLDSG 399
            AFEA  SSDS SELDSDSGDD+ A++EKD HKQRLVERYADLTDAMMDWGVEAAQALLVEVTKTAAKHRTISAWTNAVLEPGRDNSSKRGGGLKESQQARQDRATLLQ EKAVLHEVVEALGGWEAAVFLDSG
Sbjct:  342 AFEACFSSDSPSELDSDSGDDEVASKEKDNHKQRLVERYADLTDAMMDWGVEAAQALLVEVTKTAAKHRTISAWTNAVLEPGRDNSSKRGGGLKESQQARQDRATLLQAEKAVLHEVVEALGGWEAAVFLDSG 474
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BLAST of mRNA_Ecto-sp9_F_contig1033.335.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCF9_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 2.090e-60
Identity = 107/112 (95.54%), Postives = 107/112 (95.54%), Query Frame = 1 
Query:   64 DFAAREKDKHKQRLVERYADLTDAMMDWGVEAAQALLVEVTKTAAKHRTISAWTNAVLEPGRDNSSKRGGGLKESQQARQDRATLLQTEKAVLHEVVEALGGWEAAVFLDSG 399
            D AA E DKHKQRLVERYADLTDAMMDWGVEAAQALLVEVTKTAAKHRTISAWTNAVLEPGRD SSKRGGGLKESQQARQDRATLLQTEKAVLH VVEALGGWEAAVFLDSG
Sbjct:  460 DNAASENDKHKQRLVERYADLTDAMMDWGVEAAQALLVEVTKTAAKHRTISAWTNAVLEPGRDKSSKRGGGLKESQQARQDRATLLQTEKAVLHGVVEALGGWEAAVFLDSG 571
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BLAST of mRNA_Ecto-sp9_F_contig1033.335.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D979_HETAK)

HSP 1 Score: 57.4 bits (137), Expect = 1.640e-7
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:  142 DWGVEAAQALLVEVTKTAAKHRTISAWTNAVLEPGRDNSSKRGGGLKESQQARQDRATLLQTEKAVLHEVVEALGGWEAAVFLDSG 399
            +WGVEA  A+  E+ +T  K + + AW +++  PG       GGG   + +A     T L  +K V+   ++ALGGWEAAV+LDSG
Sbjct:    4 EWGVEACAAMAHEMEQTLIKQKAMMAWASSM--PGA------GGGNDAATEA----YTTLSNQKEVMRIAIDALGGWEAAVYLDSG 77
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1033.335.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized4.500e-6893.23protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.090e-6095.54protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical1.640e-739.53protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1033contigEcto-sp9_F_contig1033:17027..18116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size402
Cds size399
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1033.335.1prot_Ecto-sp9_F_contig1033.335.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1033 17028..18116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928237.142566-CDS-Ecto-sp9_F_contig1033:17027..170931622928237.142566-CDS-Ecto-sp9_F_contig1033:17027..17093Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 17028..17093 -
1692277805.381206-CDS-Ecto-sp9_F_contig1033:17027..170931692277805.381206-CDS-Ecto-sp9_F_contig1033:17027..17093Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 17028..17093 -
1622928237.1767144-CDS-Ecto-sp9_F_contig1033:17411..175881622928237.1767144-CDS-Ecto-sp9_F_contig1033:17411..17588Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 17412..17588 -
1692277805.3905356-CDS-Ecto-sp9_F_contig1033:17411..175881692277805.3905356-CDS-Ecto-sp9_F_contig1033:17411..17588Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 17412..17588 -
1622928237.1975527-CDS-Ecto-sp9_F_contig1033:17960..181161622928237.1975527-CDS-Ecto-sp9_F_contig1033:17960..18116Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 17961..18116 -
1692277805.4110305-CDS-Ecto-sp9_F_contig1033:17960..181161692277805.4110305-CDS-Ecto-sp9_F_contig1033:17960..18116Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 17961..18116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1033.335.1

>prot_Ecto-sp9_F_contig1033.335.1 ID=prot_Ecto-sp9_F_contig1033.335.1|Name=mRNA_Ecto-sp9_F_contig1033.335.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=133bp
AFEASSSSDSSSELDSDSGDDDFAAREKDKHKQRLVERYADLTDAMMDWG
VEAAQALLVEVTKTAAKHRTISAWTNAVLEPGRDNSSKRGGGLKESQQAR
QDRATLLQTEKAVLHEVVEALGGWEAAVFLDSG
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mRNA from alignment at Ecto-sp9_F_contig1033:17027..18116-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1033.335.1 ID=mRNA_Ecto-sp9_F_contig1033.335.1|Name=mRNA_Ecto-sp9_F_contig1033.335.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1090bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1033:17027..18116- (Ectocarpus species9 EcSCA_722f female)
GCGTTCGAGGCCTCCTCCTCCTCCGATTCTTCGTCCGAGTTAGACTCTGA
CTCAGGGGATGATGACTTCGCGGCAAGAGAAAAGGACAAGCATAAACAGC
GACTGGTCGAACGCTACGCGGATCTGACAGACGCCATGATGGATTGGGGC
GTAGAGGTGAGCCGACCACCGCACTTCCAGATCTATATGCAGCGACGAAA
ATTATCCCCCCGCCCTCTCGCTCCCCTCTCGCCGCGGCCACCGCCACGGA
AGTAGCATTTCTGATCGCGAAAGCTGGATGCCCAATCGATTTAGTACCCA
CCACAACGACGTGCCAGCCTTGCAGGCATCCTACAGTCGGATACCCCTTT
TCTTACTTGTGGTCGGAATTCCTACCGGGGCTTGACCTTAATTCCGTCGC
CACCTCCCTTGTGGGTTTCCGGACACCGTCCCTCTTACGTGTGCACATCT
ACTTCCGTACGGCCTGTGCAAACGGACTAACCCCCTGCTGCTCCGGACGT
ATATCCACACACCCACGCTGTCCGACAGGCGGCCCAAGCTCTATTGGTAG
AGGTGACCAAGACCGCAGCCAAGCACCGGACGATCTCGGCGTGGACGAAC
GCGGTGCTGGAACCCGGCAGAGACAACAGCAGCAAGCGCGGTGGCGGTCT
CAAGGAGTCGCAGCAAGCGAGGCAGGACAGGGCGACGCTGCTTCAGACCG
AGAAGGTGTCCCCGCTGGGTTTGAAACGGGGTTGTGTTTTATGCCGGATT
TCATCATTCGGCCTTTCTCAGAGTAACACCATTGTGGTTGTGAAGAATGA
GCGATAGACTAATTGTCCGACGGGATCTCTTCCGTCGCGTTACTTCGTAA
TGTCGAGCTGAATTGTGGCTGAATTGTGAAACGGTGACGATTGCGTTGCG
TATCTTTCAGCAGTACATGACCGTGGATCACCATGTTTCGTATCGCACCG
CCTAAGCATGGGGAATGAGACCTCGTGCCCTTGCACCCCCCTCTTTCCGC
ACCAAAATTGATCCACCTGCTAGGCCGTGCTCCACGAGGTTGTTGAGGCG
CTCGGAGGGTGGGAGGCAGCAGTTTTCCTGGACTCTGGCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1033:17027..18116-

>mRNA_Ecto-sp9_F_contig1033.335.1 ID=mRNA_Ecto-sp9_F_contig1033.335.1|Name=mRNA_Ecto-sp9_F_contig1033.335.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1033:17027..18116- (Ectocarpus species9 EcSCA_722f female)
GCGTTCGAGGCCTCCTCCTCCTCCGATTCTTCGTCCGAGTTAGACTCTGA
CTCAGGGGATGATGACTTCGCGGCAAGAGAAAAGGACAAGCATAAACAGC
GACTGGTCGAACGCTACGCGGATCTGACAGACGCCATGATGGATTGGGGC
GTAGAGGCGTTCGAGGCCTCCTCCTCCTCCGATTCTTCGTCCGAGTTAGA
CTCTGACTCAGGGGATGATGACTTCGCGGCAAGAGAAAAGGACAAGCATA
AACAGCGACTGGTCGAACGCTACGCGGATCTGACAGACGCCATGATGGAT
TGGGGCGTAGAGGCGGCCCAAGCTCTATTGGTAGAGGTGACCAAGACCGC
AGCCAAGCACCGGACGATCTCGGCGTGGACGAACGCGGTGCTGGAACCCG
GCAGAGACAACAGCAGCAAGCGCGGTGGCGGTCTCAAGGAGTCGCAGCAA
GCGAGGCAGGACAGGGCGACGCTGCTTCAGACCGAGAAGGCGGCCCAAGC
TCTATTGGTAGAGGTGACCAAGACCGCAGCCAAGCACCGGACGATCTCGG
CGTGGACGAACGCGGTGCTGGAACCCGGCAGAGACAACAGCAGCAAGCGC
GGTGGCGGTCTCAAGGAGTCGCAGCAAGCGAGGCAGGACAGGGCGACGCT
GCTTCAGACCGAGAAGGCCGTGCTCCACGAGGTTGTTGAGGCGCTCGGAG
GGTGGGAGGCAGCAGTTTTCCTGGACTCTGGCGCCGTGCTCCACGAGGTT
GTTGAGGCGCTCGGAGGGTGGGAGGCAGCAGTTTTCCTGGACTCTGGC
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