mRNA_Ecto-sp9_F_contig1033.331.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1033.331.1
Unique NamemRNA_Ecto-sp9_F_contig1033.331.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1033.331.1 vs.
Match: AB (hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCH7_9PHAE)

HSP 1 Score: 392 bits (1008), Expect = 4.600e-133
Identity = 201/219 (91.78%), Postives = 204/219 (93.15%), Query Frame = 2 
Query:   50 MWTESGSLTELAFPVMVVAIASGVSLLCTVLLWRTQKVSRDTAACFDRIERVGFRSDPQLRSLDKSIALSVPPLPPPPA-TSGAAGAVLPRKKPFEKGLVLIGGFGDMPHMWEGLAERASKAGWYTLAPRTPGWGRTDFREANKVCWTDWVLACRDSLAVARGLCDEVTVVAHSTGAPVAALVAETQPIDRLIFTGPNFLSQAGDRW*AWLGLRWIPHP 703
            MWTE+GSLTELAFPVMVVAIASGVSLLCTVLLWRTQKV RDTAACFDRIE VGFRSDPQLR+LDKSIALSVPPLPPP A T GAA AVLPRKKPFEKGLVLIGGFGDMP MWEGLAERASKAGWYTLAPRTPGWGRTDFREANKVCWTDWVLACRD LAVARGLCDEVTVVAHSTGAPVAALVAETQPIDRLIFTGPNFLSQAGDRW   L LR +  P
Sbjct:    1 MWTETGSLTELAFPVMVVAIASGVSLLCTVLLWRTQKVCRDTAACFDRIEMVGFRSDPQLRALDKSIALSVPPLPPPTAATPGAARAVLPRKKPFEKGLVLIGGFGDMPCMWEGLAERASKAGWYTLAPRTPGWGRTDFREANKVCWTDWVLACRDGLAVARGLCDEVTVVAHSTGAPVAALVAETQPIDRLIFTGPNFLSQAGDRWAKKLLLRPVVGP 219
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1033.331.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
AB4.600e-13391.78hydrolase-1 domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1033contigEcto-sp9_F_contig1033:208..2889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score67.4
Seed ortholog evalue9e-09
Seed eggNOG ortholog1485543.JMME01000014_gene281
Preferred nameest
KEGG koko:K03928
EggNOG free text desc.Serine aminopeptidase, S33
EggNOG OGs1TQ7X@1239,4H3ZP@909932,COG1647@1,COG1647@2
EC3.1.1.1
COG Functional cat.S
Best tax levelNegativicutes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-12_005570.1
Exons3
Model size986
Cds size621
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1033.331.1prot_Ecto-sp9_F_contig1033.331.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1033 524..2840 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928236.5962558-UTR-Ecto-sp9_F_contig1033:207..5231622928236.5962558-UTR-Ecto-sp9_F_contig1033:207..523Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1033 208..523 -
1692277805.2297502-UTR-Ecto-sp9_F_contig1033:207..5231692277805.2297502-UTR-Ecto-sp9_F_contig1033:207..523Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1033 208..523 -
1622928236.6882918-UTR-Ecto-sp9_F_contig1033:2840..28891622928236.6882918-UTR-Ecto-sp9_F_contig1033:2840..2889Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1033 2841..2889 -
1692277805.2724965-UTR-Ecto-sp9_F_contig1033:2840..28891692277805.2724965-UTR-Ecto-sp9_F_contig1033:2840..2889Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1033 2841..2889 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928236.6410093-CDS-Ecto-sp9_F_contig1033:523..7011622928236.6410093-CDS-Ecto-sp9_F_contig1033:523..701Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 524..701 -
1692277805.2431939-CDS-Ecto-sp9_F_contig1033:523..7011692277805.2431939-CDS-Ecto-sp9_F_contig1033:523..701Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 524..701 -
1622928236.6584084-CDS-Ecto-sp9_F_contig1033:1291..15671622928236.6584084-CDS-Ecto-sp9_F_contig1033:1291..1567Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 1292..1567 -
1692277805.2506325-CDS-Ecto-sp9_F_contig1033:1291..15671692277805.2506325-CDS-Ecto-sp9_F_contig1033:1291..1567Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 1292..1567 -
1622928236.6763048-CDS-Ecto-sp9_F_contig1033:2673..28401622928236.6763048-CDS-Ecto-sp9_F_contig1033:2673..2840Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 2674..2840 -
1692277805.264723-CDS-Ecto-sp9_F_contig1033:2673..28401692277805.264723-CDS-Ecto-sp9_F_contig1033:2673..2840Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 2674..2840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1033.331.1

>prot_Ecto-sp9_F_contig1033.331.1 ID=prot_Ecto-sp9_F_contig1033.331.1|Name=mRNA_Ecto-sp9_F_contig1033.331.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=207bp
MWTESGSLTELAFPVMVVAIASGVSLLCTVLLWRTQKVSRDTAACFDRIE
RVGFRSDPQLRSLDKSIALSVPPLPPPPATSGAAGAVLPRKKPFEKGLVL
IGGFGDMPHMWEGLAERASKAGWYTLAPRTPGWGRTDFREANKVCWTDWV
LACRDSLAVARGLCDEVTVVAHSTGAPVAALVAETQPIDRLIFTGPNFLS
QAGDRW*
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mRNA from alignment at Ecto-sp9_F_contig1033:208..2889-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1033.331.1 ID=mRNA_Ecto-sp9_F_contig1033.331.1|Name=mRNA_Ecto-sp9_F_contig1033.331.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2682bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1033:208..2889- (Ectocarpus species9 EcSCA_722f female)
CCCACCCACCGCACGAGAGAGTCCACACTACACGTGCAGAGCGTGTAGCA
TGTGGACGGAGAGCGGTAGCTTGACAGAGCTGGCCTTCCCCGTGATGGTT
GTCGCGATCGCCTCCGGCGTGTCCCTGCTGTGCACGGTCCTCCTCTGGCG
CACCCAGAAAGTCTCTCGCGACACAGCCGCCTGCTTCGACCGCATCGAAA
GGGTAGGCTTCCGAAGGTCAGCCAGCAGTCGCAACCAAACAACGGCGGTG
CAAATGAAGCCAAGGGCAGTGTCAAATCTCAAAGTACTTTGCGCCGCGCA
GTCTTTGCTCCCGACATTTGGTCATGTTCAAAGGTTTGCGCCGACTATCA
TTATGTTCGATACAAAACTTTTGGCGGCTGTGGCACAGCAGTCCACACGT
GTATGCATTCGGCGGTGTGTACAATATCGTTCTCTCATCCTCATGTGCAT
ACACACACAACTTCATCTTTGTAATGGCCTATGCTCTGAGGTGCACCGGT
CGGCACCATACATCGTTGGATCATCGGCTGGGAGTCTCTCTCTTTTATGT
GCGTTTCGCCCAAAGTCCACATCTCTCTCGAGCGTAAACCGCGGACAGCA
TTTTACTGCTCTAAAAGAGTCAGAGACCAAATATGCATATGGCAGTGTTC
GGAGCCACCTCGACTTGCGCGTCTTGTCTTGAATACACGCAAGTGTTGCT
TCTGAAGACCGGATCTAGGCATATGCTCCAAAGCAATTTCTACAACCGTC
CACACGGACGAGTCAGCGATTTTTTGTGTTGACACGATCCAAGATGGCAG
TGTTCGGTGCCACCTCGACTTGCGCGTCTTGTCTTGAATACACACAAGTG
TTGCTTCTGAAGACGGGATCTACTACAGTTGTAGGCATACTTTTAAGGCT
CCAAACAATTTCTACAACCGTCCACGCACGGACGGTAGCACGGAAGTCCC
GAAGGGATGTTATTCATCCGTCCTCTCCACGCTCTGTTGGTATTATTTAC
TACAAGTAGACCAAGGGCTGAGAGGGCCAACACACGGCAAAACCGGAGGC
GAAAGAGAGAGCTCGACTCAGCAGGTCGTTCGTCACCTCGCACCCCGGTG
TTTGCGTGTTGCTACTGCTGTATCATACGCCCTTTGTCTTGGGGCAAAGA
GAAGGAGTGTACGACGACACTATAGTTGAAAAATATGTATTTGCATGCGA
TTGCTACCGGTATGCAACTGACCGCCTTTACTTTGGAAAAGTGACACACT
ACTTTGTTTCTCGCACCTCACCCCCTCCCCCTTCTGCTGTATCCATGTAC
AACTCCATGCCTCTGCTAACAGCGACCCCCAGCTGCGCTCTCTGGACAAG
TCCATCGCTCTGTCGGTGCCGCCGCTGCCGCCGCCGCCGGCGACGTCGGG
GGCGGCGGGGGCGGTGCTACCCCGAAAGAAGCCGTTCGAGAAGGGCCTCG
TGCTCATCGGTGGGTTCGGAGACATGCCCCACATGTGGGAAGGGCTGGCG
GAGAGAGCTTCCAAGGCCGGGTGGTACACGCTGGCTCCTCGCACGCCCGG
TTGGGGCAGGACCGACTTCAGAGAGGCCAACAAAGTTTGTTGGACAGAGT
GAGTTTGTTGTGTTCTTCTTTTCGTCCTCCGGGTTTTAGAGCGACGGTTC
GGGGGCTGGCGAGGAGACCATTTACCATCCGTCGAGATGGTGCGTGATGT
AGTTTGTTTTTCGTTAGTCTTCACGTTTTTTGCTCGTTGCTGTTTCTCCT
GAGGAAGCGCTCCCGGATGGTAGGAATTTCCTGATGTTGTAACACGTTTT
TTTGTTTGGTGTTTTAGACTTGGGCATCGGGGACCAGAAACGTGTCGGGC
TGAACATACTCGAGAGGTAACGAGTCCCTGATGGTTGGCTACGTCCTTGC
CAACTGCGTCGTTTTCCGCCCTTGTGTACGCCACTTCGCCGAACAAGCTT
TTGACGACAACAGCATTGGCACCTCTCACCCACCCATGTTTGTCATGTGT
CGCATTCTGCTCCAGATGAAAAAGAGACTTCGCGTTTGCCCCTCTCCCCC
CCGCTTCCCTCTGCCGCACCCACCCACCCACATCACCTCTTCCCCCTCCC
TCCTCCCCCCCTCCCCGCTCGCGTCAAAACCTACGACCAAAACACACCCC
GGTGGTAAAAAAATACGTACTTGCAATAAAAAAAAAAGTTGGGTGCTGGC
GTGCCGGGACAGCCTAGCGGTGGCGCGGGGGCTGTGCGACGAGGTGACCG
TGGTAGCCCACAGCACTGGCGCCCCCGTGGCCGCGTTGGTGGCCGAGACC
CAACCTATCGATCGGCTCATCTTCACGGGACCCAACTTCCTCTCGCAGGC
GGGCGATCGCTGGTGAGCTTGGCTTGGGTTGCGTTGGATACCACACCCCC
CATCATGGACCGGTTTTTTAATGCTCTATTGCGTCATTCACGACGAAAGG
ATGCCAGGATCAAATGATAATATGCATATACGTTTCGAGACGGTCTCTAC
GCCGCCATTTTCGACACCGTGAGTGTTTTTGCTGCAGAGTAGGGGAGCTT
TGAATATGGGCCCAGGGAGTGTACTATCTGGCGCAACCTACGTGTTTTTT
CGAAGTAGTCACACACGCACACACCGCCGTTCCGTATGCAGCTTCTTCAT
GTGCTATTTTTACTGTTTTCCTTGTCGTGGAT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1033:208..2889-

>mRNA_Ecto-sp9_F_contig1033.331.1 ID=mRNA_Ecto-sp9_F_contig1033.331.1|Name=mRNA_Ecto-sp9_F_contig1033.331.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1242bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1033:208..2889- (Ectocarpus species9 EcSCA_722f female)
ATGTGGACGGAGAGCGGTAGCTTGACAGAGCTGGCCTTCCCCGTGATGGT
TGTCGCGATCGCCTCCGGCGTGTCCCTGCTGTGCACGGTCCTCCTCTGGC
GCACCCAGAAAGTCTCTCGCGACACAGCCGCCTGCTTCGACCGCATCGAA
AGGGTAGGCTTCCGAAGATGTGGACGGAGAGCGGTAGCTTGACAGAGCTG
GCCTTCCCCGTGATGGTTGTCGCGATCGCCTCCGGCGTGTCCCTGCTGTG
CACGGTCCTCCTCTGGCGCACCCAGAAAGTCTCTCGCGACACAGCCGCCT
GCTTCGACCGCATCGAAAGGGTAGGCTTCCGAAGCGACCCCCAGCTGCGC
TCTCTGGACAAGTCCATCGCTCTGTCGGTGCCGCCGCTGCCGCCGCCGCC
GGCGACGTCGGGGGCGGCGGGGGCGGTGCTACCCCGAAAGAAGCCGTTCG
AGAAGGGCCTCGTGCTCATCGGTGGGTTCGGAGACATGCCCCACATGTGG
GAAGGGCTGGCGGAGAGAGCTTCCAAGGCCGGGTGGTACACGCTGGCTCC
TCGCACGCCCGGTTGGGGCAGGACCGACTTCAGAGAGGCCAACAAAGTTT
GTTGGACAGACGACCCCCAGCTGCGCTCTCTGGACAAGTCCATCGCTCTG
TCGGTGCCGCCGCTGCCGCCGCCGCCGGCGACGTCGGGGGCGGCGGGGGC
GGTGCTACCCCGAAAGAAGCCGTTCGAGAAGGGCCTCGTGCTCATCGGTG
GGTTCGGAGACATGCCCCACATGTGGGAAGGGCTGGCGGAGAGAGCTTCC
AAGGCCGGGTGGTACACGCTGGCTCCTCGCACGCCCGGTTGGGGCAGGAC
CGACTTCAGAGAGGCCAACAAAGTTTGTTGGACAGATTGGGTGCTGGCGT
GCCGGGACAGCCTAGCGGTGGCGCGGGGGCTGTGCGACGAGGTGACCGTG
GTAGCCCACAGCACTGGCGCCCCCGTGGCCGCGTTGGTGGCCGAGACCCA
ACCTATCGATCGGCTCATCTTCACGGGACCCAACTTCCTCTCGCAGGCGG
GCGATCGCTGGTGATTGGGTGCTGGCGTGCCGGGACAGCCTAGCGGTGGC
GCGGGGGCTGTGCGACGAGGTGACCGTGGTAGCCCACAGCACTGGCGCCC
CCGTGGCCGCGTTGGTGGCCGAGACCCAACCTATCGATCGGCTCATCTTC
ACGGGACCCAACTTCCTCTCGCAGGCGGGCGATCGCTGGTGA
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