mRNA_Ecto-sp9_F_contig10317.325.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10317.325.1
Unique NamemRNA_Ecto-sp9_F_contig10317.325.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10317.325.1 vs.
Match: Origin (recognition complex subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU9_9PHAE)

HSP 1 Score: 509 bits (1312), Expect = 4.740e-175
Identity = 366/433 (84.53%), Postives = 375/433 (86.61%), Query Frame = 1 
Query:    1 QVLRRTIFDRQSQSALLLGNTGTGKSLVLDSVLRSLAQEASSLAKAKGATAAASAVHGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQPFRAVYLNGAAQENDGVAMREIVQQLGITGAATQGSVYTSNLAMMVDSMKTGAVNGVPVVFVLDEFERFACRKPQTLLYALLDLCQDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQIGFPRQDLDTIVSILAGALTLPGGNDXXXXXXXXXXXXXXXGVSAAF--VRDFNAVTRQTLGGAKNGVTSSAANSSXXXXXXGSGAQRSASLALPDLKDLAASGRSVGWFLRLASTAVGLLRDDEKGVTRRALARAGEMLAPDSHSLALRSLSVTQALVLVAIVRLERRGRKKDGCSFEAVFRE 1293
            +VLRRTIFDRQSQSALLLGNTGTGKSLVLDSVLRSLAQEASSL KAKGATAAA                                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQPFRAVYLNGAAQENDGVAMREIVQQLGITGAATQGSVYTSNLAMMVDSMKTGAVNGVPV+F+LDEFERFACRKPQTLLYALLDLCQDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQIGFP QDLDTIVSILAGALTLPGG++XXXXXXXXXXXXXXX         R+FNAVTRQTLGGAKNG         XXXXXX   AQRSAS ALPDLK+LAASGRSVGWFLRLASTAVGLLRDDEKGVTRRALARAGEMLAPDSH+LALRSLSVTQALVLVA+VRLERRGRKKDGCSFE VFRE
Sbjct:   61 RVLRRTIFDRQSQSALLLGNTGTGKSLVLDSVLRSLAQEASSLEKAKGATAAAX--------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQPFRAVYLNGAAQENDGVAMREIVQQLGITGAATQGSVYTSNLAMMVDSMKTGAVNGVPVIFILDEFERFACRKPQTLLYALLDLCQDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQIGFPGQDLDTIVSILAGALTLPGGSNXXXXXXXXXXXXXXXXXXXXXXXAREFNAVTRQTLGGAKNGXXXXXXXXXXXXXXXXX-AQRSASSALPDLKELAASGRSVGWFLRLASTAVGLLRDDEKGVTRRALARAGEMLAPDSHALALRSLSVTQALVLVAMVRLERRGRKKDGCSFETVFRE 460
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BLAST of mRNA_Ecto-sp9_F_contig10317.325.1 vs.
Match: Origin (recognition complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P2_ECTSI)

HSP 1 Score: 449 bits (1154), Expect = 1.010e-151
Identity = 309/433 (71.36%), Postives = 314/433 (72.52%), Query Frame = 1 
Query:    1 QVLRRTIFDRQSQSALLLGNTGTGKSLVLDSVLRSLAQEASSLAKAKGATAAASAVHGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQPFRAVYLNGAAQENDGVAMREIVQQL--GITGAATQGSVYTSNLAMMVDSMKTGAVNGVPVVFVLDEFERFACRKPQTLLYALLDLCQDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQIGFPRQDLDTIVSILAGALTLPGGNDXXXXXXXXXXXXXXXGVSAAFVRDFNAVTRQTLGGAKNGVTSSAANSSXXXXXXGSGAQRSASLALPDLKDLAASGRSVGWFLRLASTAVGLLRDDEKGVTRRALARAGEMLAPDSHSLALRSLSVTQALVLVAIVRLERRGRKKDGCSFEAVFRE 1293
            +VLRRTIFDRQSQSALLLGNTGTGKSLVLDSVLRSLAQEASSLAKAKGAT                                                                       XXXXXXX         + AA E         V  +  G  G     S +  NLAMMVDSMKTGAVNGVPVVFVLDEFERFACRKPQTLLYALLDLCQDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQIGFPRQ LDTIVSILAGALTLPGGNDXXXXXXXXXXXXXXXGVSAAF RDFNAVTRQTLGGAKNGVTS      XXXXXX    QRSAS ALPDLKDLAASGRSVGW LRLASTAVGLLRDDEKGVTRRALARAGEMLAPDSHSLALRSLSVTQALVLVA+VRLERRGRKKDGCSFEAVFRE
Sbjct:   61 RVLRRTIFDRQSQSALLLGNTGTGKSLVLDSVLRSLAQEASSLAKAKGAT-----------------------------------------------------------------------XXXXXXXXXXXXXXXXSPAAGEGXXTXGSGGVSSVEGGSAGQPASSSPHR-NLAMMVDSMKTGAVNGVPVVFVLDEFERFACRKPQTLLYALLDLCQDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQIGFPRQALDTIVSILAGALTLPGGNDXXXXXXXXXXXXXXXGVSAAFARDFNAVTRQTLGGAKNGVTSXXXXXXXXXXXXXX--QRSASSALPDLKDLAASGRSVGWLLRLASTAVGLLRDDEKGVTRRALARAGEMLAPDSHSLALRSLSVTQALVLVAMVRLERRGRKKDGCSFEAVFRE 419
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BLAST of mRNA_Ecto-sp9_F_contig10317.325.1 vs.
Match: origin (recognition complex subunit 4-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259855)

HSP 1 Score: 105 bits (262), Expect = 5.190e-21
Identity = 60/141 (42.55%), Postives = 87/141 (61.70%), Query Frame = 1 
Query:  403 VYLNGAAQENDGVAMREIVQQLG---ITGAATQGSVYTSNLAMMVDSMKTGAVNGVPVVFVLDEFERFACRKPQTLLYALLDLCQDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQIG-FPRQDLDTIVSILAGALTLP 813
            V+LNG  Q +D +A++EI +QL    + G    GS +  NLA +++++KTG+    PV+F+LDEF+ FA  + QTLLY L D+CQ       V+GL+  L+V+++ EKRVKSRFS RQI  F     D  + +    L LP
Sbjct:  135 VHLNGLLQTDDRIALKEITRQLNLDNVVGDKVFGS-FAENLAFLLEALKTGSKESKPVLFILDEFDLFAHHRNQTLLYNLFDICQSAQTPIVVIGLTCRLDVVELLEKRVKSRFSHRQIHVFNTLTFDQFMQVAEKKLQLP 274
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BLAST of mRNA_Ecto-sp9_F_contig10317.325.1 vs.
Match: Uncharacterized (protein n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6EX04_ELECQ)

HSP 1 Score: 101 bits (251), Expect = 1.360e-20
Identity = 56/120 (46.67%), Postives = 80/120 (66.67%), Query Frame = 1 
Query:  403 VYLNGAAQENDGVAMREIVQQL---GITGAATQGSVYTSNLAMMVDSMKTG-AVNGVPVVFVLDEFERFACRKPQTLLYALLDLCQDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQI 750
            V+LNG  Q ND +A++EI +QL    + G    GS +  NLA +++++KTG   +  PV+F+LDEF+ FA  K QTLLY L D+ Q      AV+GL+  L+++++ EKRVKSRFS RQI
Sbjct:   17 VHLNGLLQTNDRIALKEITRQLQLENVVGDRVFGS-FAENLAFLLEALKTGDRASSCPVIFLLDEFDLFAHHKNQTLLYNLFDVAQSAQAPVAVIGLTCRLDIMELLEKRVKSRFSHRQI 135
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BLAST of mRNA_Ecto-sp9_F_contig10317.325.1 vs.
Match: origin (recognition complex subunit 4 n=1 Tax=Cercocebus atys TaxID=9531 RepID=UPI0005F47EE2)

HSP 1 Score: 100 bits (249), Expect = 1.640e-20
Identity = 63/147 (42.86%), Postives = 89/147 (60.54%), Query Frame = 1 
Query:  403 VYLNGAAQENDGVAMREIVQQLG---ITGAATQGSVYTSNLAMMVDSMKTG-AVNGVPVVFVLDEFERFACRKPQTLLYALLDLCQDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQI------GFPRQDLDTIVSILAGALTLP 813
            V+LNG  Q ND +A++EI +QL    + G    GS +  NL+ +++++K G   +  PV+F+LDEF+ FA  K QTLLY L D+ Q      AV+GL+  L++L++ EKRVKSRFS RQI      GFP+      V I    L+LP
Sbjct:   97 VHLNGLLQINDKIALKEITRQLNLENVVGDKVFGS-FAENLSFLLEALKKGDRTSSCPVIFILDEFDLFAHHKNQTLLYNLFDISQSAQTPIAVIGLTCRLDILELLEKRVKSRFSHRQIHLMNSFGFPQY-----VKIFKEQLSLP 237
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BLAST of mRNA_Ecto-sp9_F_contig10317.325.1 vs.
Match: Origin (recognition complex subunit 4 n=2 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8R590_GEOSA)

HSP 1 Score: 103 bits (257), Expect = 1.750e-20
Identity = 60/120 (50.00%), Postives = 79/120 (65.83%), Query Frame = 1 
Query:  403 VYLNGAAQENDGVAMREIVQQL---GITGAATQGSVYTSNLAMMVDSMKTG-AVNGVPVVFVLDEFERFACRKPQTLLYALLDLCQDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQI 750
            V+LNG  Q ND +A++EI +QL    + G    GS +  NLA +++++K G   N  PV+FVLDEF+ FA  K QTLLY L D+ Q      AV+GLS  L+VL++ EKRVKSRFS RQI
Sbjct:   97 VHLNGLLQTNDNIALKEITRQLQLENVVGDKVFGS-FAENLAFLLEALKKGNRTNSCPVLFVLDEFDLFAHHKNQTLLYNLFDISQAAQTPVAVIGLSCRLDVLELLEKRVKSRFSHRQI 215
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BLAST of mRNA_Ecto-sp9_F_contig10317.325.1 vs.
Match: Uncharacterized (protein n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6K366_ELECQ)

HSP 1 Score: 101 bits (251), Expect = 2.990e-20
Identity = 56/120 (46.67%), Postives = 80/120 (66.67%), Query Frame = 1 
Query:  403 VYLNGAAQENDGVAMREIVQQL---GITGAATQGSVYTSNLAMMVDSMKTG-AVNGVPVVFVLDEFERFACRKPQTLLYALLDLCQDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQI 750
            V+LNG  Q ND +A++EI +QL    + G    GS +  NLA +++++KTG   +  PV+F+LDEF+ FA  K QTLLY L D+ Q      AV+GL+  L+++++ EKRVKSRFS RQI
Sbjct:   17 VHLNGLLQTNDRIALKEITRQLQLENVVGDRVFGS-FAENLAFLLEALKTGDRASSCPVIFLLDEFDLFAHHKNQTLLYNLFDVAQSAQAPVAVIGLTCRLDIMELLEKRVKSRFSHRQI 135
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BLAST of mRNA_Ecto-sp9_F_contig10317.325.1 vs.
Match: Origin (recognition complex subunit 4 n=1 Tax=Cricetulus griseus TaxID=10029 RepID=A0A061HY19_CRIGR)

HSP 1 Score: 101 bits (251), Expect = 3.750e-20
Identity = 61/142 (42.96%), Postives = 86/142 (60.56%), Query Frame = 1 
Query:  403 VYLNGAAQENDGVAMREIVQQLG---ITGAATQGSVYTSNLAMMVDSMKTG-AVNGVPVVFVLDEFERFACRKPQTLLYALLDLCQDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQIGFPRQ-DLDTIVSILAGALTLP 813
            V+LNG  Q ND +A+ EI +QL    + G    GS +  NL+ +++++K G   N  PV+F+LDEF+ FA +K QTLLY L D+ Q      AV+GL+  L++L++ EKRVKSRFS RQI      D    + I    L+LP
Sbjct:  114 VHLNGLMQINDKIALTEITRQLNLENVVGDKVFGS-FAENLSFLLEALKKGNRANSCPVIFILDEFDLFAHQKNQTLLYNLFDISQSAQTPVAVIGLTCRLDILELLEKRVKSRFSHRQIHLMNSFDFPQYMKIFKEQLSLP 254
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BLAST of mRNA_Ecto-sp9_F_contig10317.325.1 vs.
Match: origin (recognition complex subunit 4 isoform X2 n=4 Tax=Monotremata TaxID=9255 RepID=UPI0010A914B3)

HSP 1 Score: 101 bits (251), Expect = 5.520e-20
Identity = 58/126 (46.03%), Postives = 81/126 (64.29%), Query Frame = 1 
Query:  385 RQPFRAVYLNGAAQENDGVAMREIVQQL---GITGAATQGSVYTSNLAMMVDSMKTG-AVNGVPVVFVLDEFERFACRKPQTLLYALLDLCQDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQI 750
            R+    V+LNG  Q ND +A++EI +QL    + G    GS +  NLA +++++K G      PV+F+LDEF+ FA  K QTLLY LLD+ Q      AV+GL+  L++L++ EKRVKSRFS RQI
Sbjct:   24 RENVLQVHLNGLLQTNDRIALKEITRQLQLENVVGDRVFGS-FAENLAFLLEALKRGDRARSCPVLFILDEFDLFAHHKNQTLLYNLLDISQSAQTPVAVIGLTCRLDILELLEKRVKSRFSHRQI 148
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BLAST of mRNA_Ecto-sp9_F_contig10317.325.1 vs.
Match: origin (recognition complex subunit 4 isoform X2 n=1 Tax=Chinchilla lanigera TaxID=34839 RepID=UPI00038EF082)

HSP 1 Score: 101 bits (252), Expect = 5.610e-20
Identity = 64/147 (43.54%), Postives = 88/147 (59.86%), Query Frame = 1 
Query:  403 VYLNGAAQENDGVAMREIVQQL---GITGAATQGSVYTSNLAMMVDSMKTG-AVNGVPVVFVLDEFERFACRKPQTLLYALLDLCQDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQI------GFPRQDLDTIVSILAGALTLP 813
            VYLNG  Q ND +A++EI +QL    + G    GS +  N + +++++K G   +  PV+F+LDEF+ FA  K QTLLY L D+ Q      AVVGL+  L++L++ EKRVKSRFS RQI      GFP+      V I    L+LP
Sbjct:   96 VYLNGLLQINDKIALKEITRQLHLENVVGDKVFGS-FAENFSFLLEALKKGDRTSSCPVIFILDEFDLFAHHKNQTLLYNLFDISQSAQTPVAVVGLTCRLDILELLEKRVKSRFSHRQIHLMNSFGFPQY-----VKIFKEQLSLP 236
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10317.325.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Origin4.740e-17584.53recognition complex subunit 4 n=1 Tax=Ectocarpus s... [more]
Origin1.010e-15171.36recognition complex subunit 4 n=1 Tax=Ectocarpus s... [more]
origin5.190e-2142.55recognition complex subunit 4-like n=1 Tax=Anneiss... [more]
Uncharacterized1.360e-2046.67protein n=1 Tax=Eleutherodactylus coqui TaxID=5706... [more]
origin1.640e-2042.86recognition complex subunit 4 n=1 Tax=Cercocebus a... [more]
Origin1.750e-2050.00recognition complex subunit 4 n=2 Tax=Geotrypetes ... [more]
Uncharacterized2.990e-2046.67protein n=1 Tax=Eleutherodactylus coqui TaxID=5706... [more]
Origin3.750e-2042.96recognition complex subunit 4 n=1 Tax=Cricetulus g... [more]
origin5.520e-2046.03recognition complex subunit 4 isoform X2 n=4 Tax=M... [more]
origin5.610e-2043.54recognition complex subunit 4 isoform X2 n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10317contigEcto-sp9_F_contig10317:728..4321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score446.8
Seed ortholog evalue1.1e-122
Seed eggNOG ortholog2880.D7G0P2
Preferred nameORC4
KEGG koko:K02606
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
GOsGO:0000082,GO:0000166,GO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0000808,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005657,GO:0005664,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006267,GO:0006270,GO:0006325,GO:0006342,GO:0006355,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009743,GO:0009744,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0030466,GO:0030554,GO:0031261,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0032993,GO:0033260,GO:0034285,GO:0034622,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036387,GO:0036388,GO:0040029,GO:0042221,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043565,GO:0043596,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1901700,GO:1902292,GO:1902299,GO:1902315,GO:1902595,GO:1902597,GO:1902679,GO:1902969,GO:1902975,GO:1903047,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.DNA replication origin binding
EggNOG OGsKOG2228@1,KOG2228@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-14_001730.1
Exons5
Model size1296
Cds size1296
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10317.325.1prot_Ecto-sp9_F_contig10317.325.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10317 728..4321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928233.279273-CDS-Ecto-sp9_F_contig10317:727..12361622928233.279273-CDS-Ecto-sp9_F_contig10317:727..1236Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10317 728..1236 +
1692277804.6298668-CDS-Ecto-sp9_F_contig10317:727..12361692277804.6298668-CDS-Ecto-sp9_F_contig10317:727..1236Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10317 728..1236 +
1622928233.2937849-CDS-Ecto-sp9_F_contig10317:1611..17501622928233.2937849-CDS-Ecto-sp9_F_contig10317:1611..1750Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10317 1612..1750 +
1692277804.6401162-CDS-Ecto-sp9_F_contig10317:1611..17501692277804.6401162-CDS-Ecto-sp9_F_contig10317:1611..1750Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10317 1612..1750 +
1622928233.3114176-CDS-Ecto-sp9_F_contig10317:2866..29651622928233.3114176-CDS-Ecto-sp9_F_contig10317:2866..2965Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10317 2867..2965 +
1692277804.6473243-CDS-Ecto-sp9_F_contig10317:2866..29651692277804.6473243-CDS-Ecto-sp9_F_contig10317:2866..2965Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10317 2867..2965 +
1622928233.333675-CDS-Ecto-sp9_F_contig10317:3308..37701622928233.333675-CDS-Ecto-sp9_F_contig10317:3308..3770Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10317 3309..3770 +
1692277804.6549919-CDS-Ecto-sp9_F_contig10317:3308..37701692277804.6549919-CDS-Ecto-sp9_F_contig10317:3308..3770Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10317 3309..3770 +
1622928233.3483822-CDS-Ecto-sp9_F_contig10317:4234..43211622928233.3483822-CDS-Ecto-sp9_F_contig10317:4234..4321Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10317 4235..4321 +
1692277804.6651545-CDS-Ecto-sp9_F_contig10317:4234..43211692277804.6651545-CDS-Ecto-sp9_F_contig10317:4234..4321Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10317 4235..4321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10317.325.1

>prot_Ecto-sp9_F_contig10317.325.1 ID=prot_Ecto-sp9_F_contig10317.325.1|Name=mRNA_Ecto-sp9_F_contig10317.325.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=432bp
QVLRRTIFDRQSQSALLLGNTGTGKSLVLDSVLRSLAQEASSLAKAKGAT
AAASAVHGKRKRQKKNSPAAGEGGGTGGSGGVSSVEGGGAGQPASSSPHR
HEVEAEEEEEEQAERRQQHKQQQQQQQQRQPFRAVYLNGAAQENDGVAMR
EIVQQLGITGAATQGSVYTSNLAMMVDSMKTGAVNGVPVVFVLDEFERFA
CRKPQTLLYALLDLCQDKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQI
GFPRQDLDTIVSILAGALTLPGGNDQDDDDEGGESPPPPPGVSAAFVRDF
NAVTRQTLGGAKNGVTSSAANSSGGGGGSGSGAQRSASLALPDLKDLAAS
GRSVGWFLRLASTAVGLLRDDEKGVTRRALARAGEMLAPDSHSLALRSLS
VTQALVLVAIVRLERRGRKKDGCSFEAVFRE*
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mRNA from alignment at Ecto-sp9_F_contig10317:728..4321+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10317.325.1 ID=mRNA_Ecto-sp9_F_contig10317.325.1|Name=mRNA_Ecto-sp9_F_contig10317.325.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3594bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10317:728..4321+ (Ectocarpus species9 EcSCA_722f female)
CAGGTGCTCCGGCGAACGATCTTCGACCGCCAGAGCCAGAGCGCCCTCCT
TCTTGGCAACACCGGCACGGGCAAGTCTCTGGTCCTCGATAGCGTGCTCC
GCAGCCTGGCGCAGGAAGCTTCATCCCTCGCGAAAGCGAAGGGTGCGACC
GCAGCAGCGTCGGCGGTGCACGGGAAGCGAAAGAGGCAGAAGAAGAATTC
CCCGGCGGCAGGGGAGGGGGGAGGAACAGGCGGGTCGGGAGGTGTTTCGT
CTGTGGAGGGTGGGGGCGCTGGGCAACCCGCGTCTTCGTCGCCTCATCGG
CACGAGGTGGAGGCGGAGGAAGAGGAGGAGGAGCAGGCAGAAAGACGGCA
ACAGCACAAACAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCCTTTTCGCG
CGGTGTATCTGAACGGAGCGGCGCAGGAGAACGACGGCGTGGCCATGAGG
GAAATCGTACAGCAGCTCGGCATCACGGGGGCTGCCACGCAAGGCTCCGT
GTACACCAGGTACTGAACATCCATCGTTTCTCTTTTATTGCTCGCCGCCG
CTTTTGGCTGCGCGTTAAGGCGATGGTTCCCAAAAGTTGGATGCTTGGGT
GCTGCATCTTCTTCACTTCGGACCACTACCGTCCCAGTGCGTTGCTTACC
CCCTGCGGGCCTTTCTTGGGAACTTGCTCTATGTCTCCTCCTTATGCAGT
ATAAGTCGTGCTTTCAGCTCTCTTTGTTCCATGAAGATCGCCCGCAGCTG
GTTACACCAAGCCGTCTCACGTTCCCCCTCCACCTCTCCCTTGCTTTCCC
GTTCCCTTCTTCGCACTATGCCCCCCCCCCCCCCGCACTCTCGCTACCCC
TGCCCCCGGCTTGTTCTCGACCCCCGTTCGACAGCAACCTCGCGATGATG
GTAGACTCGATGAAGACGGGCGCAGTTAACGGAGTGCCCGTGGTCTTCGT
TCTAGATGAGTTCGAGCGTTTCGCCTGCCGGAAGCCTCAGACGCTGCTCT
ACGCCTTGCTCGACCTGTGTCAGGTAGGTTCGCTAAGGGTGTCACGCCGC
AGTTCGTAGTTGGTTGCTGCTGGTGCTCGGCCGATGATGCCTTTCGTGCT
GCTGCTCGTTTCGGTGTATGAAGTGGTGGAGCGTACGCTCTCGGTGCTTC
TACATTTCCATCGTAATGTTCATGGTGCTCGTCCGCGTCTTCGACGACCA
ATTGGTGTGTACTATCACGCCGGAATCATCCAGCTGTGCTACTGCTCTTG
TATTTTTCTGCCGCAGGATCGCGGGCCTGCTGTTGAAATTGCAAAACCGT
AGGAGAGTGAGAGCCTGCGAGCAACGCGAAGCCAAAGAAAAAATCATCGC
ACAGGCTTCCTCGCCATGCACCTATCCCTCTCAGCCGTAACCCACTTTTT
TGTGCTATCAGGTGTCCCATGTGTGCTATTTTTGTCATTTTTTCAACAGA
AATTATCTTCATAGAGAGCGAGCGCACGAGTGAGTTTACTAACACATGCT
TTTTTTAGATTCGGCGACGGCGGTTGCCGTTACTCTTTGGCCATTCTTAG
CCGACGTCGGTTGGTACATACGTCCGTGCATCTTGTTTTTGTTTGAATTC
CTGGTGAAGTGGGACCGGTAATCGGTATATAGTAGAGTCTCCTGGTGGCC
CTTTTTGCCGCGCGCACAGCTGGATCGTGGGACTCCCGTGTGTTTCTGTT
TAGTTTATCATCGAACCCCACCTTTCCCCCAGTTGTTTTTTTCGGCAACC
AGTCTCGGTTAGGCCGACCGCGCCTTCGATGGCGCCATCTATTCCACTCG
TAGTTATTCGATCTACACTCAAATGTAGTCATGATTTGTTTAACCTTGTA
CCAAACGTTGGCCGACCGCCTCCCCTTTTCATTAGACGGCTGTTCTCCCC
ACTACACCCCGTCAGGATACGACCCCCTCCCGTTGACACAGAACGAACGT
TCCTCCCCGCAACACCCCACCGCCAGGATAAGACCCCCGCCCCTTTTTCG
CAAGACGAAGATAGCTCCCAGGATAAAACTCCCTCCCAACTGCACAAGAC
GAATATTCTGCCCACAACCCCCCATCGGGATAAGACCCCTTCCCCGTTAT
GCTAGACGGACTTTCTCCCCCACGATACCCCACCGCCAGGATAAGACCAT
TTGCGCGGCCGTGGTGGGCCTGTCGGTCAACCTGAACGTCCTGGACGTGG
CAGAGAAGAGAGTCAAGTCCAGATTCTCCTTCCGGCAGGTCAGAGGCACT
GCGGAAGAGATGTACAGAGTGGATGAAGAGGGGGTGCCGAAGGGAAAACG
GACGAACGGGGGGGCGGGGGGCGGGTGGAAGGTTTGGCAGAGAGTAAAGA
GGAGAGATAGTGCGAGAGGGATACACACAGCGAAGCACGTTGTTTGTACC
GAAAAGACAAGGGAGGGGGAGTGGAAGGTTTTCGAAGGGAGAAAGGGGGA
GAGAGAGAAGTATAGAGATCAAAAGGGGGTTGGACAGGGTGAAGACAGTA
AGCCTTAGCACAAACGGTGCATACTTCTGGTCTACCCCAACCTAACGCCC
ACTCCCCAACACCTCATCACCATACCAACAGATAGGCTTCCCGCGCCAGG
ACCTCGACACCATCGTTTCGATCCTTGCGGGCGCTCTCACGTTGCCCGGA
GGAAACGACCAAGACGACGACGACGAGGGCGGCGAATCTCCTCCGCCACC
CCCCGGCGTCTCCGCCGCTTTCGTCCGAGACTTCAACGCCGTCACCCGGC
AGACCCTCGGCGGCGCCAAGAACGGTGTCACCTCCTCCGCCGCCAACAGC
AGCGGCGGCGGCGGCGGCAGCGGCAGCGGCGCGCAGCGATCCGCTTCTTT
GGCCCTGCCGGATCTGAAGGATCTCGCGGCATCGGGGAGGAGCGTGGGGT
GGTTCTTGAGGCTGGCGTCTACGGCGGTGGGGCTGCTTAGGGACGACGAG
AAGGGGGTGACGCGGAGGGCGCTGGCGAGGGCGGGGGAGATGCTCGCGCC
CGACTCGCACTCTCTGGCGCTCCGGAGCTTGTCGGTGACCCAGGTGGGTG
CGTGGAGTGGGGTTAGAGGGAGGGAGGGAACGAGGGATTTGCGTTTTTTT
GTCAGGACGGAGGGAGAAAGGGAGAAGAACGGACGGACGCAGGGACGCAG
GGAGAGAGGGGAGGTTGTCAGCTGCCGCCGCAATACCCCTCATATATATA
TTTTTTGTCGCGCTGCTGCTGCCGCTGCTGCTGTTGTAGTTACGGTATTG
TTGTCGCCATTGTGATGATCGTGTTGTGTTGTTGTTGTGGCATCTAGACG
ATTGTTTTCTCACCTGGTTGCGACGGCGTTCGCGCGCGCTCTCTAACGAG
AGCACCTGCTGCTGACAACCCTAAGATGTCGTCGCCGCAAGCTTCGGTTA
TACCCACCCGCGTGTTCGGACGTACTTCTAATGATTTCGCGCATCGCCAC
TCTTTGAGACGCACTTCTCCTTTGATTTCGTCGAAAAATTCCGCCATCCT
ACGGCAGGCCCTTGTGCTTGTTGCGATTGTGAGGTTGGAGCGTAGGGGGC
GCAAGAAGGACGGCTGTTCGTTCGAGGCCGTTTTTCGAGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10317:728..4321+

>mRNA_Ecto-sp9_F_contig10317.325.1 ID=mRNA_Ecto-sp9_F_contig10317.325.1|Name=mRNA_Ecto-sp9_F_contig10317.325.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2592bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10317:728..4321+ (Ectocarpus species9 EcSCA_722f female)
CAGGTGCTCCGGCGAACGATCTTCGACCGCCAGAGCCAGAGCGCCCTCCT
TCTTGGCAACACCGGCACGGGCAAGTCTCTGGTCCTCGATAGCGTGCTCC
GCAGCCTGGCGCAGGAAGCTTCATCCCTCGCGAAAGCGAAGGGTGCGACC
GCAGCAGCGTCGGCGGTGCACGGGAAGCGAAAGAGGCAGAAGAAGAATTC
CCCGGCGGCAGGGGAGGGGGGAGGAACAGGCGGGTCGGGAGGTGTTTCGT
CTGTGGAGGGTGGGGGCGCTGGGCAACCCGCGTCTTCGTCGCCTCATCGG
CACGAGGTGGAGGCGGAGGAAGAGGAGGAGGAGCAGGCAGAAAGACGGCA
ACAGCACAAACAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCCTTTTCGCG
CGGTGTATCTGAACGGAGCGGCGCAGGAGAACGACGGCGTGGCCATGAGG
GAAATCGTACAGCAGCTCGGCATCACGGGGGCTGCCACGCAAGGCTCCGT
GTACACCAGCAGGTGCTCCGGCGAACGATCTTCGACCGCCAGAGCCAGAG
CGCCCTCCTTCTTGGCAACACCGGCACGGGCAAGTCTCTGGTCCTCGATA
GCGTGCTCCGCAGCCTGGCGCAGGAAGCTTCATCCCTCGCGAAAGCGAAG
GGTGCGACCGCAGCAGCGTCGGCGGTGCACGGGAAGCGAAAGAGGCAGAA
GAAGAATTCCCCGGCGGCAGGGGAGGGGGGAGGAACAGGCGGGTCGGGAG
GTGTTTCGTCTGTGGAGGGTGGGGGCGCTGGGCAACCCGCGTCTTCGTCG
CCTCATCGGCACGAGGTGGAGGCGGAGGAAGAGGAGGAGGAGCAGGCAGA
AAGACGGCAACAGCACAAACAGCAGCAGCAGCAGCAGCAGCAGCGGCAGC
CTTTTCGCGCGGTGTATCTGAACGGAGCGGCGCAGGAGAACGACGGCGTG
GCCATGAGGGAAATCGTACAGCAGCTCGGCATCACGGGGGCTGCCACGCA
AGGCTCCGTGTACACCAGCAACCTCGCGATGATGGTAGACTCGATGAAGA
CGGGCGCAGTTAACGGAGTGCCCGTGGTCTTCGTTCTAGATGAGTTCGAG
CGTTTCGCCTGCCGGAAGCCTCAGACGCTGCTCTACGCCTTGCTCGACCT
GTGTCAGCAACCTCGCGATGATGGTAGACTCGATGAAGACGGGCGCAGTT
AACGGAGTGCCCGTGGTCTTCGTTCTAGATGAGTTCGAGCGTTTCGCCTG
CCGGAAGCCTCAGACGCTGCTCTACGCCTTGCTCGACCTGTGTCAGGATA
AGACCATTTGCGCGGCCGTGGTGGGCCTGTCGGTCAACCTGAACGTCCTG
GACGTGGCAGAGAAGAGAGTCAAGTCCAGATTCTCCTTCCGGCAGGATAA
GACCATTTGCGCGGCCGTGGTGGGCCTGTCGGTCAACCTGAACGTCCTGG
ACGTGGCAGAGAAGAGAGTCAAGTCCAGATTCTCCTTCCGGCAGATAGGC
TTCCCGCGCCAGGACCTCGACACCATCGTTTCGATCCTTGCGGGCGCTCT
CACGTTGCCCGGAGGAAACGACCAAGACGACGACGACGAGGGCGGCGAAT
CTCCTCCGCCACCCCCCGGCGTCTCCGCCGCTTTCGTCCGAGACTTCAAC
GCCGTCACCCGGCAGACCCTCGGCGGCGCCAAGAACGGTGTCACCTCCTC
CGCCGCCAACAGCAGCGGCGGCGGCGGCGGCAGCGGCAGCGGCGCGCAGC
GATCCGCTTCTTTGGCCCTGCCGGATCTGAAGGATCTCGCGGCATCGGGG
AGGAGCGTGGGGTGGTTCTTGAGGCTGGCGTCTACGGCGGTGGGGCTGCT
TAGGGACGACGAGAAGGGGGTGACGCGGAGGGCGCTGGCGAGGGCGGGGG
AGATGCTCGCGCCCGACTCGCACTCTCTGGCGCTCCGGAGCTTGTCGGTG
ACCCAGATAGGCTTCCCGCGCCAGGACCTCGACACCATCGTTTCGATCCT
TGCGGGCGCTCTCACGTTGCCCGGAGGAAACGACCAAGACGACGACGACG
AGGGCGGCGAATCTCCTCCGCCACCCCCCGGCGTCTCCGCCGCTTTCGTC
CGAGACTTCAACGCCGTCACCCGGCAGACCCTCGGCGGCGCCAAGAACGG
TGTCACCTCCTCCGCCGCCAACAGCAGCGGCGGCGGCGGCGGCAGCGGCA
GCGGCGCGCAGCGATCCGCTTCTTTGGCCCTGCCGGATCTGAAGGATCTC
GCGGCATCGGGGAGGAGCGTGGGGTGGTTCTTGAGGCTGGCGTCTACGGC
GGTGGGGCTGCTTAGGGACGACGAGAAGGGGGTGACGCGGAGGGCGCTGG
CGAGGGCGGGGGAGATGCTCGCGCCCGACTCGCACTCTCTGGCGCTCCGG
AGCTTGTCGGTGACCCAGGCCCTTGTGCTTGTTGCGATTGTGAGGTTGGA
GCGTAGGGGGCGCAAGAAGGACGGCTGTTCGTTCGAGGCCGTTTTTCGAG
AGTGAGCCCTTGTGCTTGTTGCGATTGTGAGGTTGGAGCGTAGGGGGCGC
AAGAAGGACGGCTGTTCGTTCGAGGCCGTTTTTCGAGAGTGA
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