mRNA_Ecto-sp9_F_contig10301.312.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10301.312.1
Unique NamemRNA_Ecto-sp9_F_contig10301.312.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10301.312.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10301contigEcto-sp9_F_contig10301:98..1714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928231.7470012-CDS-Ecto-sp9_F_contig10301:97..3151622928231.7470012-CDS-Ecto-sp9_F_contig10301:97..315Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10301 98..315 -
1692277803.9508355-CDS-Ecto-sp9_F_contig10301:97..3151692277803.9508355-CDS-Ecto-sp9_F_contig10301:97..315Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10301 98..315 -
1622928231.7589703-CDS-Ecto-sp9_F_contig10301:1626..17141622928231.7589703-CDS-Ecto-sp9_F_contig10301:1626..1714Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10301 1627..1714 -
1692277803.9590971-CDS-Ecto-sp9_F_contig10301:1626..17141692277803.9590971-CDS-Ecto-sp9_F_contig10301:1626..1714Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10301 1627..1714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10301.312.1prot_Ecto-sp9_F_contig10301.312.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10301 98..1714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10301.312.1

>prot_Ecto-sp9_F_contig10301.312.1 ID=prot_Ecto-sp9_F_contig10301.312.1|Name=mRNA_Ecto-sp9_F_contig10301.312.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=102bp
VGVATDTSSSTSNRAREGRGQGRRRHGDTYPKTPHSRGRRLPDGGCHRRR
RRRCCRRTSQRLGATGHQDRYHESNTQEQEGAQRFHRGAGRRRKRGESQH
GE
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mRNA from alignment at Ecto-sp9_F_contig10301:98..1714-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10301.312.1 ID=mRNA_Ecto-sp9_F_contig10301.312.1|Name=mRNA_Ecto-sp9_F_contig10301.312.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1617bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10301:98..1714- (Ectocarpus species9 EcSCA_722f female)
GTTGGGGTTGCTACGGATACATCATCCTCCACATCCAATAGAGCACGAGA
GGGGCGAGGCCAGGGCAGACGACGACATGGAGATACGTGTGAGTGCTCCT
CCCCTCCTGCTTGATCTAACCGCCTTGATTTTGCCTCGCTGAAACACGTT
CGGGATGCAGGAGTTGATTATTCAACATCGACATTTGTGAAACGTGTTGT
CGTTGCTTTCCTAAAAGCAATTGTAGCCTACATAGTGATGCAACAATGGA
TGATACACACGCGGTACGTGTGTGTGTGCAGCAGCAGCAGCAGCACGTAG
CTTGCAGGCAAGACACCGCCCGCAGGCTCGTGTTTGTATCGCACAGCACT
TCTGCTGTCGGTGTCGTCGCTTTTCAGTTTCCACAGCAGGAAGTTGCTGG
GTGCAACGTAGTCAACGCGGGCTTTGATACAATCTACACTCTTACTGATG
TACACCGACCGAATGCACACAGCGCTGTGTGTGCAGCAGCACGCAGGCAG
CTTGCAGACAATACACCGCCAGCAGCTTGACGATTATCAAAACGCTTGCG
AACATCTACCATTTGTGTTGCACAGCCCTTCTGCTGTCGGTGTCGTCGCT
TTTCATATGTTCCGCAGTAGGAACAGGCTGTATGTGTGCAGCAGCACGCA
GGCACCTTGCAGGCAGTACACCGGAAGCAGGTTGACGAATTTCAACGGTT
GCGACCAACTTGTTCGTTCTGTGTCGTCGCTTTTCGTATTTTCCACAGCA
GGAACAGGCTAGTTGTACAGTAGTACACGCTTCAAAGTACATATTTCTCG
CGTTGTGTTTGACGCGGGTGCACTGCTGCTGTGCCTGGCATTATTTCCGA
GCTTCGCGAAAGATAGCACTGTGAGCTCCCGACTCCTACATTGTAGTGTT
GGATCTTCTGCTACTACGCAATGGAAAACGTCCACACTATAAATACCAAC
CCTATCCATGGCTCCGAGAGCAAAGAGGAGCAGGCAGACACTTACGAGAA
GCAACAGAGAGTCTTGACTTTGACTAAGTACTGCTCTACACCTAGTTGCC
GTACTGTTAATCAAGCAACGGACACTGGAAGTGCAATGCTGAACGAAGGT
GGCATGATCACAGTGGCTTGAACCCTCCCCCCTACGTCGCAGAGAATAAA
TATGTGCGTAGTCAATTGAACAAAGTTTTATGCAGAGAAGAGGTACATCC
GGCCCCCCCCCACCCGATGCGCCGTCAATGGTCTAACAGCTACGGCATGC
GAAACATGACTACCCACCACCACCACCCACCCCGATTGGCCATGGGCGAT
AGGTCCTGTGGGAATACAAAGCTTAGTCGGGGACGCGTGGTCCATGGTCT
AACCGCTAAGGCATGCAAAACATGCGTACCCCCCACGCCCTCGAAACAGA
CCCAAAGACGCCTCACAGTCGTGGACGACGGCTGCCTGATGGAGGCTGCC
ACCGCCGCCGCCGCCGCCGCTGCTGCCGCCGGACGTCCCAAAGACTCGGC
GCAACCGGGCACCAAGACCGCTACCATGAGTCAAATACACAAGAACAAGA
AGGGGCACAGCGGTTTCACCGGGGGGCGGGGCGGCGGCGGAAAAGGGGCG
AGAGCCAGCACGGGGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10301:98..1714-

>mRNA_Ecto-sp9_F_contig10301.312.1 ID=mRNA_Ecto-sp9_F_contig10301.312.1|Name=mRNA_Ecto-sp9_F_contig10301.312.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=612bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10301:98..1714- (Ectocarpus species9 EcSCA_722f female)
GTTGGGGTTGCTACGGATACATCATCCTCCACATCCAATAGAGCACGAGA
GGGGCGAGGCCAGGGCAGACGACGACATGGAGATACGTGTTGGGGTTGCT
ACGGATACATCATCCTCCACATCCAATAGAGCACGAGAGGGGCGAGGCCA
GGGCAGACGACGACATGGAGATACGTACCCAAAGACGCCTCACAGTCGTG
GACGACGGCTGCCTGATGGAGGCTGCCACCGCCGCCGCCGCCGCCGCTGC
TGCCGCCGGACGTCCCAAAGACTCGGCGCAACCGGGCACCAAGACCGCTA
CCATGAGTCAAATACACAAGAACAAGAAGGGGCACAGCGGTTTCACCGGG
GGGCGGGGCGGCGGCGGAAAAGGGGCGAGAGCCAGCACGGGGAGACCCAA
AGACGCCTCACAGTCGTGGACGACGGCTGCCTGATGGAGGCTGCCACCGC
CGCCGCCGCCGCCGCTGCTGCCGCCGGACGTCCCAAAGACTCGGCGCAAC
CGGGCACCAAGACCGCTACCATGAGTCAAATACACAAGAACAAGAAGGGG
CACAGCGGTTTCACCGGGGGGCGGGGCGGCGGCGGAAAAGGGGCGAGAGC
CAGCACGGGGAG
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