mRNA_Ecto-sp9_F_contig10295.302.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10295.302.1
Unique NamemRNA_Ecto-sp9_F_contig10295.302.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10295.302.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10295contigEcto-sp9_F_contig10295:880..1515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size237
Cds size237
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928227.193506-CDS-Ecto-sp9_F_contig10295:879..9701622928227.193506-CDS-Ecto-sp9_F_contig10295:879..970Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10295 880..970 +
1692277802.9655888-CDS-Ecto-sp9_F_contig10295:879..9701692277802.9655888-CDS-Ecto-sp9_F_contig10295:879..970Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10295 880..970 +
1622928227.2066207-CDS-Ecto-sp9_F_contig10295:1369..15151622928227.2066207-CDS-Ecto-sp9_F_contig10295:1369..1515Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10295 1370..1515 +
1692277802.9755535-CDS-Ecto-sp9_F_contig10295:1369..15151692277802.9755535-CDS-Ecto-sp9_F_contig10295:1369..1515Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10295 1370..1515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10295.302.1prot_Ecto-sp9_F_contig10295.302.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10295 880..1515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10295.302.1

>prot_Ecto-sp9_F_contig10295.302.1 ID=prot_Ecto-sp9_F_contig10295.302.1|Name=mRNA_Ecto-sp9_F_contig10295.302.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=79bp
MCSGGVALKEELPDYCEAATCTEAECCDTSDDGDDVETEIIAGVVSSVAA
AIIIGAGAWAWQKCRVREKEGGVREDAP*
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mRNA from alignment at Ecto-sp9_F_contig10295:880..1515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10295.302.1 ID=mRNA_Ecto-sp9_F_contig10295.302.1|Name=mRNA_Ecto-sp9_F_contig10295.302.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=636bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10295:880..1515+ (Ectocarpus species9 EcSCA_722f female)
ATGTGCAGTGGAGGTGTAGCTCTGAAGGAAGAGCTACCGGACTACTGCGA
AGCGGCCACCTGCACGGAGGCCGAGTGCTGCGACACAAGCGGTGAGTGAA
TACTATGGCGGTGAATTCACACTACTGTACTACTGCGGTGAGTGGGTATT
TTCGCGGTGAGTGAATATTTTTGCGGTGAGTAGATATTTCTGTGGAACAT
CTCCCGTCGACCACTTTCCGGCTCTGACTTCAATAGACTACAGTATTCCG
AATATTTCTTGACCAAGCAATGGAATTTCTTATGGGTTAAGGTCCTCTCG
CTCTCTTCATGAGACACCTATTCGTCGCACGTTGTGTGTGTGTGGTTCCC
GTCTACTCTGGACGCCAAGCAGTAGGTCATGCTCTGTTGATGTTCCATTT
TGGCGTTTTCCTCCGGTACTCGTACTCCGAGCTCACGCCTTGCACGTATC
CAACCGCCGCCGTCTGTTTCGTCCTCTAACTCCCCCTCAGATGACGGAGA
TGATGTAGAAACTGAAATTATTGCTGGTGTTGTGTCCAGTGTGGCAGCCG
CTATTATAATTGGAGCCGGTGCCTGGGCGTGGCAAAAGTGTCGAGTTCGA
GAAAAAGAAGGGGGGGTACGGGAAGATGCTCCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10295:880..1515+

>mRNA_Ecto-sp9_F_contig10295.302.1 ID=mRNA_Ecto-sp9_F_contig10295.302.1|Name=mRNA_Ecto-sp9_F_contig10295.302.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10295:880..1515+ (Ectocarpus species9 EcSCA_722f female)
ATGTGCAGTGGAGGTGTAGCTCTGAAGGAAGAGCTACCGGACTACTGCGA
AGCGGCCACCTGCACGGAGGCCGAGTGCTGCGACACAAGCGATGTGCAGT
GGAGGTGTAGCTCTGAAGGAAGAGCTACCGGACTACTGCGAAGCGGCCAC
CTGCACGGAGGCCGAGTGCTGCGACACAAGCGATGACGGAGATGATGTAG
AAACTGAAATTATTGCTGGTGTTGTGTCCAGTGTGGCAGCCGCTATTATA
ATTGGAGCCGGTGCCTGGGCGTGGCAAAAGTGTCGAGTTCGAGAAAAAGA
AGGGGGGGTACGGGAAGATGCTCCGTAGATGACGGAGATGATGTAGAAAC
TGAAATTATTGCTGGTGTTGTGTCCAGTGTGGCAGCCGCTATTATAATTG
GAGCCGGTGCCTGGGCGTGGCAAAAGTGTCGAGTTCGAGAAAAAGAAGGG
GGGGTACGGGAAGATGCTCCGTAG
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