mRNA_Ecto-sp9_F_contig10294.301.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10294.301.1
Unique NamemRNA_Ecto-sp9_F_contig10294.301.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10294.301.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10294contigEcto-sp9_F_contig10294:1770..3473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928227.1083424-CDS-Ecto-sp9_F_contig10294:1769..20141622928227.1083424-CDS-Ecto-sp9_F_contig10294:1769..2014Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10294 1770..2014 +
1692277802.9458265-CDS-Ecto-sp9_F_contig10294:1769..20141692277802.9458265-CDS-Ecto-sp9_F_contig10294:1769..2014Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10294 1770..2014 +
1622928227.1517444-CDS-Ecto-sp9_F_contig10294:3443..34711622928227.1517444-CDS-Ecto-sp9_F_contig10294:3443..3471Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10294 3444..3471 +
1692277802.9551344-CDS-Ecto-sp9_F_contig10294:3443..34711692277802.9551344-CDS-Ecto-sp9_F_contig10294:3443..3471Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10294 3444..3471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10294.301.1prot_Ecto-sp9_F_contig10294.301.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10294 1770..3471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10294.301.1

>prot_Ecto-sp9_F_contig10294.301.1 ID=prot_Ecto-sp9_F_contig10294.301.1|Name=mRNA_Ecto-sp9_F_contig10294.301.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=91bp
SPVGVALRRVPHESKPQLRRPAARSNAQQQRHCRPQKQRRRPRYSVGNAI
ELGRAQSGTYAAISRGWDEGLRRSSSRGSSRRPSLRQNKNF
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mRNA from alignment at Ecto-sp9_F_contig10294:1770..3473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10294.301.1 ID=mRNA_Ecto-sp9_F_contig10294.301.1|Name=mRNA_Ecto-sp9_F_contig10294.301.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1704bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10294:1770..3473+ (Ectocarpus species9 EcSCA_722f female)
TCTCCCGTGGGCGTTGCTCTTCGTCGCGTGCCTCATGAATCCAAGCCGCA
GCTTCGTCGTCCAGCAGCCCGCTCTAATGCGCAGCAGCAGCGGCACTGCC
GGCCGCAGAAGCAGCGGCGGCGGCCTCGTTACAGCGTGGGGAACGCTATC
GAGCTCGGCCGTGCACAGAGCGGGACGTACGCAGCGATATCGCGGGGCTG
GGATGAAGGCCTCCGCAGGAGCAGCAGCAGGGGAAGCAGCAGAAGGTGAG
GGGCCGGCCAAACCGCTTTCCAGCCAGACACGCCCTCAGAAGGATCGCAC
ATACAGGACCGGTCACGGCTGGCTCCGTCTACATAGTGTGCACTTTCAAG
AAGCGCGTGTGCAACTCGAAGGCTGCTGGCGAGGACAAACGGCCTGACGA
AAACGTTGCTGCATCTGTTGCTGTTTGCGTTGGAGTTGCCGATGTACTGC
TGTACCTCTCGAATTTCGAATTAAAATAATTATTGTCGGCAGCGTGGTTG
CCTACAGTGCCGCTTCTGTAACGCGTATTGTTGCGATCCGAACTGGCACT
GCTGTTTCGTGTACTGCACTTGCAGCCAGCGTTGGGCGGTATCTCGAACT
GACGCCGCCTATGCAAACGCGTTCGGTGTATGCCAGTCTCTGTTGTCTGA
GACACATTGACGCATCGGGAAAGTGTGATGCTCCCGTTCTTTCTCGCGTT
CGTTTGGTATGGCGCAGCGGTTACATACATCTGCATACGTGTGTTTTAGG
GTACAGACGGCAGCACATACCATGAAGCACAGTAGTCGCGTGCATGTCTA
GTCCTCACATCACTACTGCTATGCAGTGTCAACATGCAGAGGAGCAGGCA
AAAGACACAGCCAGACACACACAGGGAGGTTGAGGTAGGGAGGCATAAAT
AGACAAGGGTTGGAAGAAAATCGTGTCTTCTGACATGTGGCGAGCTACCT
AAACAGCAGCTGGTTGAACATCAACATGGGGTCCACGCGTCGATCTCACA
CTCTCGCACCTCCGAAGCAACAAGCAGCAGTGCCTCTATGGGTACCTTCA
GTCACCTCTGCCGAGCATCCTGTGTCAACTGCCGCACGTATGTACGACCC
CATGTCACTACTACTATGCTGACTCGCAGTACGTACTCACGTACATCCGA
TTGAGATCCACACTTCATTTTCGAATGCTTGGTTCGCGAAGTCAACTGAC
ACAAGCCAAAGCAGCAGCAGCAGTGCCTGTGTGGGTTTTTCTGGGTATTT
GGCGATATTGTCCTGCATGGCGACCGCTGTGCTACTGTTGTGCTCTCGCG
TACAACCGATCGCAGTGTTATTTTTTCCATCGCTCCTCCTCCGTTTGCCG
TTATGTGTACATTTACTGTTTGTTTTTGCACACCTTACAATAATAGATAA
CACCAGGTAGACGAGCAATGTCCCATTCAACAACGAAGCACGGTTTGTTG
TTCTGTTGTTGCGACATTGGAACACGGGGAAAGTATAATATCGTTACAGT
CGAGGTTCTTTCGATATCCATTCTCATCATTGGCAGTACATTTTGGAAGG
GCTATCAATGTCAATTGTCATCGACTACGGAGATTTCCATCAATGCCCAC
TGCTGTCATATGCAGATGACATGCATCCGCTGTGCCTCGTTCGTTTTTTC
TGTCTGTTACTCTTGATGGAACAGGCCCTCGCTCCGGCAGAACAAGAATT
TCCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10294:1770..3473+

>mRNA_Ecto-sp9_F_contig10294.301.1 ID=mRNA_Ecto-sp9_F_contig10294.301.1|Name=mRNA_Ecto-sp9_F_contig10294.301.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10294:1770..3473+ (Ectocarpus species9 EcSCA_722f female)
TCTCCCGTGGGCGTTGCTCTTCGTCGCGTGCCTCATGAATCCAAGCCGCA
GCTTCGTCGTCCAGCAGCCCGCTCTAATGCGCAGCAGCAGCGGCACTGCC
GGCCGCAGAAGCAGCGGCGGCGGCCTCGTTACAGCGTGGGGAACGCTATC
GAGCTCGGCCGTGCACAGAGCGGGACGTACGCAGCGATATCGCGGGGCTG
GGATGAAGGCCTCCGCAGGAGCAGCAGCAGGGGAAGCAGCAGAAGTCTCC
CGTGGGCGTTGCTCTTCGTCGCGTGCCTCATGAATCCAAGCCGCAGCTTC
GTCGTCCAGCAGCCCGCTCTAATGCGCAGCAGCAGCGGCACTGCCGGCCG
CAGAAGCAGCGGCGGCGGCCTCGTTACAGCGTGGGGAACGCTATCGAGCT
CGGCCGTGCACAGAGCGGGACGTACGCAGCGATATCGCGGGGCTGGGATG
AAGGCCTCCGCAGGAGCAGCAGCAGGGGAAGCAGCAGAAGGCCCTCGCTC
CGGCAGAACAAGAATTTCGCCCTCGCTCCGGCAGAACAAGAATTTC
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