mRNA_Ecto-sp9_F_contig1029.298.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1029.298.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B7_9PHAE) HSP 1 Score: 1207 bits (3123), Expect = 0.000e+0 Identity = 772/891 (86.64%), Postives = 787/891 (88.33%), Query Frame = 1
Query: 67 MIHPDRIAPDPTEGWRRGSRGALRKSCDTCTSSKTKCQGSIPCDRCKKRRIECKFSKRRRCGPKARAEDEKRLRTGMDVQQQAGLAIKDSPEHKAAVHQQHAGVPHPPSXXXXXIGTIAGLDSSSNXXXXXXXXGLPVSNPKFGGPITSDSLSGLVELIAPTLSDTGGSGSSASISXXXXXXISSSCHGGGEAAYSHHAAAASGNNRYTAIPGLNAEGVSPFLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPSCPVRDLPARAKSMGDTPGGFGEAGGGRGGGG------VQAGFFPEGSMGSTFMRQQDGGSEGRQHASSALGAPLPQQQQLPPRGSLPMTLDGRSKTHLKTFMRTVGSLILLPGADAIRSAVFGDAGCGDPEQLPDAPTAADRGSAEDVGVKREGRPVAADEDGGIVDVFAEACRAEAWAAAAVGAQFSGASEEECKDYQSRAMGALSRCLDAPLPEVASVMLLLCLFWMHSMETRKVARYFSFAQQVGLELGSLMPEELRHTIAFVACLVTMTLNLDQVGSFSLHVKDQAVWGVSLRDNSCRPGVDPFVLALTALTVACNEMLHDGAGRGGQGAIGAGGLSPRVAPSKVLTDLLTKAAKALKADARDGNRNPEHVLALLHGLRAYTHAARGEAEDAEASGRLMLAIIDRHAAVLHLPLTFTLAEASRRLLAAAAERSSRPAPEGVHVEALGAAVTKLSFARSTQAVKPGSGGVAXXXXXXXWCAFGDDILAAFAGA-GGRDSGGDVLSEAANDNRDRPRSGSMSPPPRRSVRPLSRAVIASQSWQPTTGGAAMPIPSSSAGGASGRESSASLPRWSGG 2718
MIHPDR+APDPTEGWRRGSRG LRKSCDTCTSSKTKCQGSIPCDRCKKRRIECKFSKRRRCGPKARAEDEKR RTGMD QQQAGLAIKDSPEHK A+HQQHAGVPHPPS IGTIAGLDSSSN GLPVSNPKFGGP+TSDSLSGLVELIAPTLSDTGGSGSSASI+ ISSSCHGGGEAAYSHHAAA SGNNRYTAIPGL+AEGVSPFLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TPPSCPVRDLPARAKSMGDTPGGFG+AG VQAGFF EGSM +TFMRQQDGGSEGRQHASSALGAPLPQQQ+LPPRGSLPMTLDGRSKTHLKTFMRTVGSLILLPGADAIRSAVFGDA GDP+Q PDAP AAD GSAEDVGVKREGRPVAA+EDGGIVDVFAEACRAEAWAAAAVGAQFSGASEEECKDYQSRAM AL+RCLDAPLPEVASVMLL CLFWMHSMETRKV+RYF FAQQVGLELGSLMPEELRHTIAFVACLVTMTLNLDQVGSFSL VKDQAVWGVSLRDNSCRPGVDPFVLALTALTVACNEMLHDGAGRGGQGAIGAGGLSPRVAPSK N E+ H AYTHAARGEAEDAEASGRLMLAIIDRHAAVLHLPLTFTLAEASRRLLAAAAERSSRP PEGVHVEALGAAVTKLSFAR TQ V+PG+GGVAXXXXXXX GGRD GGDVLSEA NDNRD PRSGSMSPPPRRSVRPLSRAVIASQSWQPTTGGAAMPIPSSSA G SGRESSASLPRWSGG
Sbjct: 1 MIHPDRVAPDPTEGWRRGSRGPLRKSCDTCTSSKTKCQGSIPCDRCKKRRIECKFSKRRRCGPKARAEDEKRPRTGMDAQQQAGLAIKDSPEHKPAMHQQHAGVPHPPSPSLPPIGTIAGLDSSSNNMTGGGGDGLPVSNPKFGGPMTSDSLSGLVELIAPTLSDTGGSGSSASITASINASISSSCHGGGEAAYSHHAAAVSGNNRYTAIPGLHAEGVSPFLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-TPPSCPVRDLPARAKSMGDTPGGFGQAGXXXXXXXXXXXXXVQAGFFSEGSMENTFMRQQDGGSEGRQHASSALGAPLPQQQRLPPRGSLPMTLDGRSKTHLKTFMRTVGSLILLPGADAIRSAVFGDASGGDPKQSPDAPIAADPGSAEDVGVKREGRPVAAEEDGGIVDVFAEACRAEAWAAAAVGAQFSGASEEECKDYQSRAMRALARCLDAPLPEVASVMLLFCLFWMHSMETRKVSRYFGFAQQVGLELGSLMPEELRHTIAFVACLVTMTLNLDQVGSFSLQVKDQAVWGVSLRDNSCRPGVDPFVLALTALTVACNEMLHDGAGRGGQGAIGAGGLSPRVAPSK----------------------NNEYPTLPAHA--AYTHAARGEAEDAEASGRLMLAIIDRHAAVLHLPLTFTLAEASRRLLAAAAERSSRPTPEGVHVEALGAAVTKLSFARPTQVVRPGAGGVAXXXXXXXXXXXXXXXXXXXXXXXGGRDIGGDVLSEATNDNRDPPRSGSMSPPPRRSVRPLSRAVIASQSWQPTTGGAAMPIPSSSADGTSGRESSASLPRWSGG 866
BLAST of mRNA_Ecto-sp9_F_contig1029.298.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH3_ECTSI) HSP 1 Score: 1169 bits (3024), Expect = 0.000e+0 Identity = 655/764 (85.73%), Postives = 661/764 (86.52%), Query Frame = 1
Query: 1042 MGDTPGGFGEAGGGRGGGG-VQAGFFPEGSMGSTFMRQQDGGSEGRQHASSALGAPLPQQQQLPPRGSLPMTLDGRSKTHLKTFMRTVGSLILLPGADAIRSAVFGDAGCGDPEQLPDAPTAADRGSAEDVGVKREGRPVAADEDGGIVDVFAEACRAEAWAAAAVGAQFSGASEEECKDYQSRAMGALSRCLDAPLPEVASVMLLLCLFWMHSMETRKVARYFSFAQQVGLELGSLMPEELRHTIAFVACLVTMTLNLDQVGSFSLHVKDQAVWGVSLRDNSCRPGVDPFVLALTALTVACNEMLHDGAGRGGQGAIGAGGLSPRVAPSKVLTDLLTKAAKALKADARDGNRNPEHVLALLHGLRAYTHAARGEAEDAEASGRLMLAIIDRHAAVLHLPLTFTLAEASRRLLAAAAERSSRPAPEGVHVEALGAAVTKLSFARSTQAVKPGSGGVAXXXXXXXWCAFGDDILAAFAGAGGRDSGG--DVLSEAANDNRDRPRSGSMSPPPRRSVRPLSRAVIASQSWQPTTGGAAMPIPSSSAGGASGRESSASLPRWSGGXXXXXXXXXXXXXXXXSAVHRSVLLGSNAAAAPSDWVDRVRKMPTIASSPRASSPNVVQRMGGNGGXXXXGVRSPSPRQEDNNCTSPRSMGMLHPGPMPSAAPNVGVKYMSEPRDNLALLSTVAAPGGYNNPPRRASYEDRSGVERQQAARQRLTGQPGGGGAADRDGADDLPPPANPGLTTGMSFDPNRDDGTFQFTLGPS 3324
MGDTPGGFGEAG VQAGFFP+GSMGSTFMRQQDGGSEGRQHASSALGAPLPQQQQLPPR SLPMTLDGRSKTHLKTFMRTVGSLILLPGA AIRSAVFGDAG GDPEQLPDAPTAAD GSAEDVGVKREGRPVAA+EDGGIVDVFAEACRAEAWAAAAVGAQFSGASEEECKDYQSRAMGALSRCLDAPLPEVASVMLLLCLFWMHSMETRKVARYF FAQQVGLELGSLMPEELRHTIAFVACLVTMTLNLDQVGSFSL VKDQAVWGVSLRDNSCRPGVDPFVLALTALTVACNEMLHDGAGRGGQGAIGAGGLSPRVAPSKVLTDLLTKAAKAL+ADARDGNRNPEHVLALLHGLRA+THAARGEAEDAEASGRLMLAIIDRHAAVLHLPLTFTLAEASRRLLAAAAERSSRPAPEGVHVEALGAAVTKLSFARSTQAVKPG+GGVAXXXXXXX DVLSEAANDNRDR RSGSMSPPPRRSVRPLSRA IASQSWQPTTGGAAMPIPSSSAGGASGRESSASLPRWSGG S VHRSVLLGSNAAAAPSDWVDRVRKMPTIASSPRASSPNVV RMGGNGG VRSPSPRQEDNNCTSPRSMGMLHPGPMPSAAP+VGVKYMSEPRDNLALLSTVAAPGGYNNP LPPPANPGL TGMSFDPNRDDGTFQFTLGPS
Sbjct: 1 MGDTPGGFGEAGXXXXXXXXVQAGFFPKGSMGSTFMRQQDGGSEGRQHASSALGAPLPQQQQLPPRRSLPMTLDGRSKTHLKTFMRTVGSLILLPGAGAIRSAVFGDAGGGDPEQLPDAPTAADPGSAEDVGVKREGRPVAAEEDGGIVDVFAEACRAEAWAAAAVGAQFSGASEEECKDYQSRAMGALSRCLDAPLPEVASVMLLLCLFWMHSMETRKVARYFGFAQQVGLELGSLMPEELRHTIAFVACLVTMTLNLDQVGSFSLQVKDQAVWGVSLRDNSCRPGVDPFVLALTALTVACNEMLHDGAGRGGQGAIGAGGLSPRVAPSKVLTDLLTKAAKALEADARDGNRNPEHVLALLHGLRAFTHAARGEAEDAEASGRLMLAIIDRHAAVLHLPLTFTLAEASRRLLAAAAERSSRPAPEGVHVEALGAAVTKLSFARSTQAVKPGAGGVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVLSEAANDNRDRSRSGSMSPPPRRSVRPLSRAAIASQSWQPTTGGAAMPIPSSSAGGASGRESSASLPRWSGGGAAPAGAPSSSCS---SGVHRSVLLGSNAAAAPSDWVDRVRKMPTIASSPRASSPNVVHRMGGNGGGNGGDVRSPSPRQEDNNCTSPRSMGMLHPGPMPSAAPSVGVKYMSEPRDNLALLSTVAAPGGYNNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPPPANPGLATGMSFDPNRDDGTFQFTLGPS 761
BLAST of mRNA_Ecto-sp9_F_contig1029.298.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6R5_9PHAE) HSP 1 Score: 243 bits (620), Expect = 3.730e-71 Identity = 122/140 (87.14%), Postives = 124/140 (88.57%), Query Frame = 1
Query: 2899 MGGNGGXXXXGVRSPSPRQEDNNCTSPRSMGMLHPGPMPSAAPNVGVKYMSEPRDNLALLSTVAAPGGYNNPPRRASYEDRSGVERQQAARQRLTGQPGGGGAADRDGADDLPPPANPGLTTGMSFDPNRDDGTFQFTLG 3318
MGGNGG VRSPSPRQE NN TSPR MGMLHPGPMP+AAPNVGVKYMSEP DNLALLSTVAAPG YNNPPRRASYEDRSGVERQ A RQR+ QP GGGAADRDG DDLPPPANPGLTTGMSFDPNRDDGTFQFTLG
Sbjct: 1 MGGNGGGNGGDVRSPSPRQEGNNITSPRFMGMLHPGPMPTAAPNVGVKYMSEPCDNLALLSTVAAPGAYNNPPRRASYEDRSGVERQAAVRQRIAAQPSGGGAADRDGGDDLPPPANPGLTTGMSFDPNRDDGTFQFTLG 140
BLAST of mRNA_Ecto-sp9_F_contig1029.298.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIX7_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 7.360e-5 Identity = 23/45 (51.11%), Postives = 34/45 (75.56%), Query Frame = 1
Query: 127 GALRKSCDTCTSSKTKCQGSIPCDRCKKRRIECKFSKRRRCGPKA 261
G LRKSCD+C SSK +C G PC RC +R+ C +++R++CGP++
Sbjct: 46 GFLRKSCDSCVSSKRRCDGQDPCTRCLRRKKPCHYTERKKCGPRS 90 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1029.298.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1029.298.1 >prot_Ecto-sp9_F_contig1029.298.1 ID=prot_Ecto-sp9_F_contig1029.298.1|Name=mRNA_Ecto-sp9_F_contig1029.298.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=1109bp MAEDSNNSDSSTATKTATKKAAMIHPDRIAPDPTEGWRRGSRGALRKSCDback to top mRNA from alignment at Ecto-sp9_F_contig1029:2493..10764- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1029.298.1 ID=mRNA_Ecto-sp9_F_contig1029.298.1|Name=mRNA_Ecto-sp9_F_contig1029.298.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=8272bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1029:2493..10764- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1029:2493..10764- >mRNA_Ecto-sp9_F_contig1029.298.1 ID=mRNA_Ecto-sp9_F_contig1029.298.1|Name=mRNA_Ecto-sp9_F_contig1029.298.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=6654bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1029:2493..10764- (Ectocarpus species9 EcSCA_722f female)back to top |