mRNA_Ecto-sp9_F_contig10282.294.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10282.294.1
Unique NamemRNA_Ecto-sp9_F_contig10282.294.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10282.294.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT4_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 3.790e-35
Identity = 117/137 (85.40%), Postives = 119/137 (86.86%), Query Frame = 2 
Query:    2 VGEKRQRRDGGAGARYYGPSCRLRADVAEAERSRRPRLPLISAAPSVSTAAGSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSGQVGVGAGGTWRAHAVGQTGGPGVWLLQGT 412
            VGEKRQRRDGGAGARYYGPSCRLRADVAEAERSRRPRLPLISAAP+VSTAAGSSP            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   PSGQ GVGAGG WR+HAVGQTGG GVWLLQGT
Sbjct: 1028 VGEKRQRRDGGAGARYYGPSCRLRADVAEAERSRRPRLPLISAAPAVSTAAGSSPPLSHSSRCPNSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-TPSGQAGVGAGGIWRSHAVGQTGGAGVWLLQGT 1163
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BLAST of mRNA_Ecto-sp9_F_contig10282.294.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB40_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 3.330e-34
Identity = 91/137 (66.42%), Postives = 93/137 (67.88%), Query Frame = 2 
Query:    2 VGEKRQRRDGGAGARYYGPSCRLRADVAEAERSRRPRLPLISAAPSVSTAAGSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSGQVGVGAGGTWRAHAVGQTGGPGVWLLQGT 412
            VGEKRQRRDGGAGARYYGPSCRLRADVAEAERSRRPRLPLISAAP+VSTAAGSSP     XXXXXXXXXX                                  APSGQ G GA G WRAHAVGQTGG G+WLLQGT
Sbjct: 1103 VGEKRQRRDGGAGARYYGPSCRLRADVAEAERSRRPRLPLISAAPAVSTAAGSSPPLSYSXXXXXXXXXXPRRNPSCLSFSASEAWWAQLVREEVMLAAAAPA-APSGQAGFGASGIWRAHAVGQTGGAGMWLLQGT 1238
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10282.294.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.790e-3585.40protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.330e-3466.42protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10282contigEcto-sp9_F_contig10282:1547..1961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size416
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928226.0183675-CDS-Ecto-sp9_F_contig10282:1546..19601622928226.0183675-CDS-Ecto-sp9_F_contig10282:1546..1960Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10282 1547..1960 +
1692277802.4982982-CDS-Ecto-sp9_F_contig10282:1546..19601692277802.4982982-CDS-Ecto-sp9_F_contig10282:1546..1960Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10282 1547..1960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10282.294.1prot_Ecto-sp9_F_contig10282.294.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10282 1547..1960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10282.294.1

>prot_Ecto-sp9_F_contig10282.294.1 ID=prot_Ecto-sp9_F_contig10282.294.1|Name=mRNA_Ecto-sp9_F_contig10282.294.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=138bp
RGGEAAAEGRRRRGEVLRAVVPPSSRRRGGRALPPPPVASDIRRPVCVDS
GGVVASAVALFAPPQLRRRRRRSKEKPVVPVLFGLRSLVGAADEGGGDAR
CCCRRPQRAGGCRRRRDLARACRRADGGTRGVAAAGDG
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mRNA from alignment at Ecto-sp9_F_contig10282:1547..1961+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10282.294.1 ID=mRNA_Ecto-sp9_F_contig10282.294.1|Name=mRNA_Ecto-sp9_F_contig10282.294.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=415bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10282:1547..1961+ (Ectocarpus species9 EcSCA_722f female)
CGTGGGGGAGAAGCGGCAGCGGAGGGACGGCGGCGCCGGGGCGAGGTACT
ACGGGCCGTCGTGCCGCCTTCGAGCCGACGTCGCGGAGGCCGAGCGCTCC
CGCCGCCCCCGGTTGCCTCTGATATCCGCCGCCCCGTCTGTGTCGACAGC
GGCGGGGTCGTCGCCTCCGCTGTCGCACTCTTCGCGCCCCCCCAACTCCG
GCGGCGGCGGCGGCGGTCCAAGGAGAAACCCGTCGTGCCTGTCCTTTTCG
GCCTCCGAAGCTTGGTGGGCGCAGCTGATGAAGGAGGAGGTGATGCTCGC
TGCTGCTGCCGCCGCCCCCAGCGGGCAGGTGGGTGTCGGCGCAGGCGGGA
CCTGGCGCGCGCATGCCGTCGGGCAGACGGGGGGACCCGGGGTGTGGCTG
CTGCAGGGGACGGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10282:1547..1961+

>mRNA_Ecto-sp9_F_contig10282.294.1 ID=mRNA_Ecto-sp9_F_contig10282.294.1|Name=mRNA_Ecto-sp9_F_contig10282.294.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=828bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10282:1547..1961+ (Ectocarpus species9 EcSCA_722f female)
CGTGGGGGAGAAGCGGCAGCGGAGGGACGGCGGCGCCGGGGCGAGGTACT
ACGGGCCGTCGTGCCGCCTTCGAGCCGACGTCGCGGAGGCCGAGCGCTCC
CGCCGCCCCCGGTTGCCTCTGATATCCGCCGCCCCGTCTGTGTCGACAGC
GGCGGGGTCGTCGCCTCCGCTGTCGCACTCTTCGCGCCCCCCCAACTCCG
GCGGCGGCGGCGGCGGTCCAAGGAGAAACCCGTCGTGCCTGTCCTTTTCG
GCCTCCGAAGCTTGGTGGGCGCAGCTGATGAAGGAGGAGGTGATGCTCGC
TGCTGCTGCCGCCGCCCCCAGCGGGCAGGTGGGTGTCGGCGCAGGCGGGA
CCTGGCGCGCGCATGCCGTCGGGCAGACGGGGGGACCCGGGGTGTGGCTG
CTGCAGGGGACGGTCGTGGGGGAGAAGCGGCAGCGGAGGGACGGCGGCGC
CGGGGCGAGGTACTACGGGCCGTCGTGCCGCCTTCGAGCCGACGTCGCGG
AGGCCGAGCGCTCCCGCCGCCCCCGGTTGCCTCTGATATCCGCCGCCCCG
TCTGTGTCGACAGCGGCGGGGTCGTCGCCTCCGCTGTCGCACTCTTCGCG
CCCCCCCAACTCCGGCGGCGGCGGCGGCGGTCCAAGGAGAAACCCGTCGT
GCCTGTCCTTTTCGGCCTCCGAAGCTTGGTGGGCGCAGCTGATGAAGGAG
GAGGTGATGCTCGCTGCTGCTGCCGCCGCCCCCAGCGGGCAGGTGGGTGT
CGGCGCAGGCGGGACCTGGCGCGCGCATGCCGTCGGGCAGACGGGGGGAC
CCGGGGTGTGGCTGCTGCAGGGGACGGT
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