mRNA_Ecto-sp9_F_contig10277.289.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10277.289.1
Unique NamemRNA_Ecto-sp9_F_contig10277.289.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10277.289.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWC1_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 3.540e-24
Identity = 65/127 (51.18%), Postives = 74/127 (58.27%), Query Frame = 1 
Query:  229 MTGPRRIASGLLTIAKSHYGNPKMCA-----SC-------PRTPAGTTRRRPRPHFSTR----WADQRSASAWVAKLLAMFSGLALG-----GVWWEWEGAGCLYIAFGNSL*AVYIVKRWHFSFVT 546
            MTGPRRIASGLLTIAKSHYGNPK+       +C         TPA         H        + D+   S    ++    +G  LG     GVWWEWEGAGCLYIAFGNS+ AVYIVK+WHFSFVT
Sbjct:    1 MTGPRRIASGLLTIAKSHYGNPKIMRVLSPYACGDDNLIVEDTPAADV------HVDDAELGAFLDEMDGSTLSIRMGREIAGNVLGLSAWCGVWWEWEGAGCLYIAFGNSVQAVYIVKQWHFSFVT 121
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10277.289.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA09_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.650e-14
Identity = 57/134 (42.54%), Postives = 75/134 (55.97%), Query Frame = 3 
Query:    3 DIAALPINQMGTHESILCKCTRKARAWGRLSNGGYSTTNARAYSKRGELSRTDLSTTSTARRGTLSPLLVLHAVVHDGPASHSLWTPDHRQVALREPQDVRFLSPYACGDDK---EETPA--------AFLDEM 371
            DIAALP+ ++G+ ES++CKCTRKARAW RLSNGGYS+TNA+A+ ++   S        T  R   S +L +       P S               P+ +RFLSP+A G+D    EETPA        A+LDEM
Sbjct:  120 DIAALPVAEIGSLESVVCKCTRKARAWARLSNGGYSSTNAKAFQEKFWYSMLQF---MTGPRRIASGILTI-------PKSD-----------YGNPKIMRFLSPHAGGNDNLVVEETPAEGGDSDLGAYLDEM 232
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10277.289.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L779_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.530e-13
Identity = 38/47 (80.85%), Postives = 39/47 (82.98%), Query Frame = 2 
Query:    2 RHRRPPDQSDGHTREHLVQVHEEGEGVGQAFQRRIQHHQRQGIFQER 142
            RH RPP Q D  TREH VQVHEEGEG GQAFQR +QHHQRQGIFQER
Sbjct:   32 RHSRPPGQRDWQTREHRVQVHEEGEGAGQAFQRWMQHHQRQGIFQER 78
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10277.289.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV6_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 3.530e-13
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = 3 
Query:    3 DIAALPINQMGTHESILCKCTRKARAWGRLSNGGYSTTNARAYSKR 140
            +IAA P+N++G HESI+CKCTRKARA GRL NGG+STTNARAYSKR
Sbjct:   95 NIAAHPVNEVGKHESIVCKCTRKARACGRLCNGGFSTTNARAYSKR 140
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10277.289.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D5_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.810e-12
Identity = 41/64 (64.06%), Postives = 45/64 (70.31%), Query Frame = 3 
Query:  291 PQDVRFLSPYACGDDK---EETPAA-----------FLDEMGRSALSIRMGREIAGNVLGLSAW 440
            P+ +R LSP+ACGDD    E+TPAA           FLDEM  SALSIRMGREIAGNVLGLSAW
Sbjct:   26 PKIMRLLSPHACGDDNLSVEDTPAAGVHVDDAELGAFLDEMDGSALSIRMGREIAGNVLGLSAW 89
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10277.289.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Q8_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 6.700e-12
Identity = 53/137 (38.69%), Postives = 70/137 (51.09%), Query Frame = 3 
Query:   27 QMGTHESILCKCTRKARAWGRLSNGGYSTTNARAYSKRGELSRTDLSTTSTARRGTLSPLLVLHAVVHDGPASHSLWTPDHRQVALREPQDVRFLSPYACGDDK---EETPAAFLDEMGRSALSIRMGR-EIAGNVL 425
            Q+GT ES++CKCTRKARAWGRLSNGGYS+TNA+A+ +    S     T                     GP  H+       +     P+ +RFLSPY  G+D    EETPA  ++    S   +  GR +IAG  +
Sbjct:   46 QIGTLESVVCKCTRKARAWGRLSNGGYSSTNAKAFQEGFWYSMLQFMT---------------------GPRRHASGILTIPKSDFGNPKIMRFLSPYVGGNDNLVVEETPAEDVE----SRFFVAFGRPKIAGPAI 157
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10277.289.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K844_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 4.320e-11
Identity = 39/64 (60.94%), Postives = 44/64 (68.75%), Query Frame = 3 
Query:  291 PQDVRFLSPYACGDDK---EETPAA-----------FLDEMGRSALSIRMGREIAGNVLGLSAW 440
            P+++R LS  ACGDD    E+TPAA           FLDEM  SALSIRMGR+IAGNVLGLSAW
Sbjct:   26 PKNLRLLSACACGDDNLIVEDTPAADVHVDDAELGAFLDEMNGSALSIRMGRDIAGNVLGLSAW 89
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10277.289.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE1_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 4.440e-11
Identity = 52/129 (40.31%), Postives = 64/129 (49.61%), Query Frame = 3 
Query:   27 QMGTHESILCKCTRKARAWGRLSNGGYSTTNARAYSKRGELSRTDLSTTSTARRGTLSPLLVLHAVVHDGPASHSLWTPDHRQVALREPQDVRFLSPYACGDDK---EETPA-----------AFLDEM 371
            Q+GT ES++CKCTRKARAWGRLSNGGYS+TNA+A+      S     T                     GP  H+             P+ +RFLSP+A G+D    EETPA           A+LDEM
Sbjct:  215 QIGTLESVVCKCTRKARAWGRLSNGGYSSTNAKAFQVGFWYSMLQFMT---------------------GPRRHASGILTIPNSDYGNPKIMRFLSPHAGGNDNLVVEETPAEDVHVEDSDLGAYLDEM 322
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10277.289.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.200e-10
Identity = 47/112 (41.96%), Postives = 58/112 (51.79%), Query Frame = 3 
Query:   27 QMGTHESILCKCTRKARAWGRLSNGGYSTTNARAYSKRGELSRTDLSTTSTARRGTLSPLLVLHAVVHDGPASHSLWTPDHRQVALREPQDVRFLSPYACGDDK---EETPA 353
            Q+GT ES++CKCTRKARAWGRLSNGGYS+TNA+A+ +    S     T                     GP  H        +     P+ +RFLSP+A G D    EETPA
Sbjct:  281 QIGTLESVVCKCTRKARAWGRLSNGGYSSTNAKAFQEGFWYSMLQFMT---------------------GPRRHVSGILTIPKSDYGNPKIMRFLSPHAGGKDNLVVEETPA 371
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10277.289.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKM5_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.580e-9
Identity = 30/49 (61.22%), Postives = 42/49 (85.71%), Query Frame = 3 
Query:    3 DIAALPINQMGTHESILCKCTRKARAWGRLSNGGYSTTNARAYSKRGEL 149
            DIAALP+N++GTHE+I+CK TRK+RAW +LS GG+ + NARA+ +R +L
Sbjct:   19 DIAALPVNEIGTHETIVCKVTRKSRAWIKLSAGGFGSANARAFQERLQL 67
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10277.289.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
Uncharacterized3.540e-2451.18protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.650e-1442.54protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.530e-1380.85protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.530e-1378.26protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.810e-1264.06protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.700e-1238.69protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.320e-1160.94protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.440e-1140.31protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.200e-1041.96protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.580e-961.22protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10277contigEcto-sp9_F_contig10277:390..2685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1648
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10277.289.1prot_Ecto-sp9_F_contig10277.289.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10277 419..1534 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928224.7930882-UTR-Ecto-sp9_F_contig10277:389..4181622928224.7930882-UTR-Ecto-sp9_F_contig10277:389..418Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10277 390..418 +
1692277802.1580455-UTR-Ecto-sp9_F_contig10277:389..4181692277802.1580455-UTR-Ecto-sp9_F_contig10277:389..418Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10277 390..418 +
1622928224.8505769-UTR-Ecto-sp9_F_contig10277:1534..26851622928224.8505769-UTR-Ecto-sp9_F_contig10277:1534..2685Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10277 1535..2685 +
1692277802.1913712-UTR-Ecto-sp9_F_contig10277:1534..26851692277802.1913712-UTR-Ecto-sp9_F_contig10277:1534..2685Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10277 1535..2685 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928224.8178492-CDS-Ecto-sp9_F_contig10277:418..5931622928224.8178492-CDS-Ecto-sp9_F_contig10277:418..593Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10277 419..593 +
1692277802.1703954-CDS-Ecto-sp9_F_contig10277:418..5931692277802.1703954-CDS-Ecto-sp9_F_contig10277:418..593Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10277 419..593 +
1622928224.830525-CDS-Ecto-sp9_F_contig10277:1241..15341622928224.830525-CDS-Ecto-sp9_F_contig10277:1241..1534Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10277 1242..1534 +
1692277802.1813486-CDS-Ecto-sp9_F_contig10277:1241..15341692277802.1813486-CDS-Ecto-sp9_F_contig10277:1241..1534Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10277 1242..1534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10277.289.1

>prot_Ecto-sp9_F_contig10277.289.1 ID=prot_Ecto-sp9_F_contig10277.289.1|Name=mRNA_Ecto-sp9_F_contig10277.289.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=156bp
MGTHESILCKCTRKARAWGRLSNGGYSTTNARAYSKRGELSRTDLSTTST
ARRGTLSPLLVLHAVVHDGPASHSLWTPDHRQVALREPQDVRFLSPYACG
DDKEETPAAFLDEMGRSALSIRMGREIAGNVLGLSAWWCLVGVGGSRLLV
HSVRQ*
back to top

mRNA from alignment at Ecto-sp9_F_contig10277:390..2685+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10277.289.1 ID=mRNA_Ecto-sp9_F_contig10277.289.1|Name=mRNA_Ecto-sp9_F_contig10277.289.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2296bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10277:390..2685+ (Ectocarpus species9 EcSCA_722f female)
ACGACATCGCCGCCCTCCCGATCAATCAGATGGGCACACACGAGAGCATC
TTGTGCAAGTGCACGAGGAAGGCGAGGGCGTGGGGCAGGCTTTCCAACGG
CGGATACAGCACCACCAACGCCAGGGCATATTCCAAGAGAGGTGAGCTTT
CCCGAACCGACCTTTCCACAACCTCAACTGCAAGAAGGGGGACGTTGTCT
CCACGTGAGCTACATGGCGGGCGGTTCTGCTGTTTACCAAGTTTGACCCG
TGGCGGAATGAGCTTTTTCTCTCCGGTTGAGCATAGAATCAAGTACAGCG
TACTCGCTGTTTTGCTGGCCGTCGTTGCCGAATCTGGGTGTGGTTTTCTC
CATTGCATTGTCGCACGGTGGTTCCTGGTTTTAACTAATAGCGATCGTTT
GGAGTTATCAGCAATTTCGTGCACGTCGATCATGCCGGTTTGAAGGAGCA
CGTAAGGTATGCGTGACAGCACGCAAGCAGTGAGTGCCCCCCGCCCCTCT
TGATTTGTTTACTCCGAAGTATTGTTTCGTGCAGATGCAGTTTAGGCCTG
ACGTGCTCCGTTTTCTTCTGTACATTTCGGAATTCCCCGATCAGAGTCGC
CCCGGGGGTGATATTTTCGTTTTTTCAGACCCCCCCCCCAACCTCCTACT
CTTGCGCTGTTACCAACACAATCGTGTTGTACGTCACGGAATAAATCAGT
ATTATTCTCGTGTTCTTTATGCTCGTCACGATTTTGCTTGTCACCCCACC
TAACCGAGTTTTCGTCCACTCTGGAATCAAACAATGAACTTTTTGTTTCA
TGTCGTTGCGCATCCATCCATGCCTTCCCTTGCCCTACGTGCTTTGGAAC
AGTTTTGGTACTCCATGCTGTAGTTCATGACGGGCCCGCGTCGCATAGCC
TCTGGACTCCTGACCATCGCCAAGTCGCACTACGGGAACCCCAAGATGTG
CGCTTCCTGTCCCCGTACGCCTGCGGGGACGACAAGGAGGAGACCCCGGC
CGCATTTCTCGACGAGATGGGCAGATCAGCGCTCAGCATCCGCATGGGTC
GCGAAATTGCTGGCAATGTTCTCGGGCTTAGCGCTTGGTGGTGTTTGGTG
GGAGTGGGAGGGAGCAGGTTGCTTGTACATAGCGTTCGGCAATAGCCTAT
AGGCAGTCTATATCGTCAAGCGGTGGCACTTTTCTTTTGTCACGTGTGTT
ATCGAGGCACGCGTCATACGCCTGCAATTCGATAAGTGCGTGCGTACCTT
GGACGTGATACACACAACGCAGAGGTTGTTTTGCGTGTCGCCGGGGGGAG
GGGCACCCAAGTATGGCGGTGCTACGGACGAGGGGCAAGTAGGTTTGGTC
GGAGCTTTATTTCGTTGAGTTGAGTCTCTGTATGCACAAGAATGTGGTCT
TGAGCGGGTACATGCAAGTTTCGTGAACCTGAAGGCAAGGGGTGCGATTT
TTTGGTAGTGAAGGAGTGGGTTGGTGCATTTTTTTATCTTCTTTTTTTGT
TTTTATGTTCGTAGATCGTGTGGTTCACGATGCGTCCTGAGTTGGTTGGT
GCACGTCGTGACTACGTTTTGCAATGTCGAAAGTGGTCGTCGGAGTTTGG
TTTGTGAGCCCCAATATTGTGGATTTTTATTGATGGATTGGGTTTTGGGA
TGCATCCTACCGTAAATGGCGTGGATGAGCTTGAGCGTTTTTGTACGTGT
AGGAGCACTAAATGCTGCTGCGAGGGACGCGACAAGAAGATAAATGAAAG
AACTATTCAAAAGGAAAAGCTCCAATTTTTCGGCGCCGTTAGTACAACTG
CCATGGTCTCTACAGGGTTTTCCCAGGGTGTGTACCCCGCGAGGGTCCCT
GAGTGGCAGGGTACGCACAGGGTGTGGGATCGGTACCCTGGCAGGGTACC
CACCTTGCAGCCGGGTCAAGCCTGCAAAGTAGTCTTTTAGAGTGACCTCG
CCAGGGTGATATCTCCTCACCCTGGCAGCGTAGCCGAATGGCTCCAGGTG
CAGTGTTGGTTGGTCAGTGCTGGTGGCAGGTGCGCATCGTGTGTGGTCTT
GTAGAACATACATGTGTGCTAGCATCTGGGAGCGTCGTCGGTGTCGGTTC
GTCAGTGCTGGTCGTACGCGAGTCGTCTGTTGGGTGGCCGTGGCATAGTG
CACAAACAATCGTTTCTGGTTGGCGGCGTGAGTTGCAGGGTTGGTTCAGA
GATTGTTCCATGCGGTTCTTGTCAACAAGCAACCTACTTTGGTGATGGTT
AGTTCAGAGATGGGCCCCATGCGGTTTTGTCAGAAAAAAATATGGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10277:390..2685+

>mRNA_Ecto-sp9_F_contig10277.289.1 ID=mRNA_Ecto-sp9_F_contig10277.289.1|Name=mRNA_Ecto-sp9_F_contig10277.289.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=936bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10277:390..2685+ (Ectocarpus species9 EcSCA_722f female)
ATGGGCACACACGAGAGCATCTTGTGCAAGTGCACGAGGAAGGCGAGGGC
GTGGGGCAGGCTTTCCAACGGCGGATACAGCACCACCAACGCCAGGGCAT
ATTCCAAGAGAGGTGAGCTTTCCCGAACCGACCTTTCCACAACCTCAACT
GCAAGAAGGGGGACGTTGTCTCCACATGGGCACACACGAGAGCATCTTGT
GCAAGTGCACGAGGAAGGCGAGGGCGTGGGGCAGGCTTTCCAACGGCGGA
TACAGCACCACCAACGCCAGGGCATATTCCAAGAGAGGTGAGCTTTCCCG
AACCGACCTTTCCACAACCTCAACTGCAAGAAGGGGGACGTTGTCTCCAC
TTTTGGTACTCCATGCTGTAGTTCATGACGGGCCCGCGTCGCATAGCCTC
TGGACTCCTGACCATCGCCAAGTCGCACTACGGGAACCCCAAGATGTGCG
CTTCCTGTCCCCGTACGCCTGCGGGGACGACAAGGAGGAGACCCCGGCCG
CATTTCTCGACGAGATGGGCAGATCAGCGCTCAGCATCCGCATGGGTCGC
GAAATTGCTGGCAATGTTCTCGGGCTTAGCGCTTGGTGGTGTTTGGTGGG
AGTGGGAGGGAGCAGGTTGCTTGTACATAGCGTTCGGCAATAGTTTTGGT
ACTCCATGCTGTAGTTCATGACGGGCCCGCGTCGCATAGCCTCTGGACTC
CTGACCATCGCCAAGTCGCACTACGGGAACCCCAAGATGTGCGCTTCCTG
TCCCCGTACGCCTGCGGGGACGACAAGGAGGAGACCCCGGCCGCATTTCT
CGACGAGATGGGCAGATCAGCGCTCAGCATCCGCATGGGTCGCGAAATTG
CTGGCAATGTTCTCGGGCTTAGCGCTTGGTGGTGTTTGGTGGGAGTGGGA
GGGAGCAGGTTGCTTGTACATAGCGTTCGGCAATAG
back to top