mRNA_Ecto-sp9_F_contig10273.286.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10273.286.1
Unique NamemRNA_Ecto-sp9_F_contig10273.286.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10273.286.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10273contigEcto-sp9_F_contig10273:671..1139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size230
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928224.5224676-CDS-Ecto-sp9_F_contig10273:670..7861622928224.5224676-CDS-Ecto-sp9_F_contig10273:670..786Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10273 671..786 -
1692277802.0902565-CDS-Ecto-sp9_F_contig10273:670..7861692277802.0902565-CDS-Ecto-sp9_F_contig10273:670..786Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10273 671..786 -
1622928224.5623055-CDS-Ecto-sp9_F_contig10273:1027..11391622928224.5623055-CDS-Ecto-sp9_F_contig10273:1027..1139Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10273 1028..1139 -
1692277802.0975614-CDS-Ecto-sp9_F_contig10273:1027..11391692277802.0975614-CDS-Ecto-sp9_F_contig10273:1027..1139Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10273 1028..1139 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10273.286.1prot_Ecto-sp9_F_contig10273.286.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10273 671..1139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10273.286.1

>prot_Ecto-sp9_F_contig10273.286.1 ID=prot_Ecto-sp9_F_contig10273.286.1|Name=mRNA_Ecto-sp9_F_contig10273.286.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=76bp
GRGGGRVAGGGGGGGNLAEGGFFFVPAAGAIAPGAAAGGNAAVVAPADDS
NSAPSASWYSRQSSLVDFAALLGRAE
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mRNA from alignment at Ecto-sp9_F_contig10273:671..1139-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10273.286.1 ID=mRNA_Ecto-sp9_F_contig10273.286.1|Name=mRNA_Ecto-sp9_F_contig10273.286.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=469bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10273:671..1139- (Ectocarpus species9 EcSCA_722f female)
GGGAGAGGCGGCGGAAGAGTCGCGGGTGGTGGTGGTGGTGGCGGTAACCT
GGCCGAAGGCGGTTTCTTTTTCGTTCCTGCTGCGGGCGCAATCGCACCGG
GGGCAGCAGCAGGTGCGCAACTACCGCACCGCACCGGGTGTTACTCGTTG
GTACCGTTCATGGTAGGGGGTTCGTTTCGGATAGGGAAAGCGTTTTTGAG
CCACCTTTGGGAGGAACGATTGATCGGTCATCGGTGGTCATCGGTCCTGT
GGGAACAAACGCTCCGTCCTCTCGAGGACGCGTGGTGTGACAACTACAAG
GCATGCTGAACATGAGTACCCCCCCCCCCCCCCCCGACCCGTTACGCACA
CAGGAGGAAACGCGGCGGTGGTGGCCCCGGCGGACGACAGCAATAGCGCC
CCCTCTGCATCGTGGTACTCGAGGCAATCCTCGCTAGTAGACTTTGCTGC
ATTGCTCGGGCGGGCGGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10273:671..1139-

>mRNA_Ecto-sp9_F_contig10273.286.1 ID=mRNA_Ecto-sp9_F_contig10273.286.1|Name=mRNA_Ecto-sp9_F_contig10273.286.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10273:671..1139- (Ectocarpus species9 EcSCA_722f female)
GGGAGAGGCGGCGGAAGAGTCGCGGGTGGTGGTGGTGGTGGCGGTAACCT
GGCCGAAGGCGGTTTCTTTTTCGTTCCTGCTGCGGGCGCAATCGCACCGG
GGGCAGCAGCAGGGGAGAGGCGGCGGAAGAGTCGCGGGTGGTGGTGGTGG
TGGCGGTAACCTGGCCGAAGGCGGTTTCTTTTTCGTTCCTGCTGCGGGCG
CAATCGCACCGGGGGCAGCAGCAGGAGGAAACGCGGCGGTGGTGGCCCCG
GCGGACGACAGCAATAGCGCCCCCTCTGCATCGTGGTACTCGAGGCAATC
CTCGCTAGTAGACTTTGCTGCATTGCTCGGGCGGGCGGAGGAGGAAACGC
GGCGGTGGTGGCCCCGGCGGACGACAGCAATAGCGCCCCCTCTGCATCGT
GGTACTCGAGGCAATCCTCGCTAGTAGACTTTGCTGCATTGCTCGGGCGG
GCGGAG
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