mRNA_Ecto-sp9_F_contig1024.264.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1024.264.1
Unique NamemRNA_Ecto-sp9_F_contig1024.264.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1024.264.1 vs.
Match: PseudoU_synth_2 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7K6_9PHAE)

HSP 1 Score: 816 bits (2108), Expect = 2.980e-294
Identity = 430/527 (81.59%), Postives = 439/527 (83.30%), Query Frame = 1 
Query:    1 MLLSPAGALRVMLVLRGALGLQQIRHRSRVFERGTSTAIIPYNKDVLPQTCAAARLHGDSCWEKKTQTLQPQGWRVAREGFSFAVHSSSSTATEDELSDGSSRRRQARNSEKNRAGRNNSRPSLEPPQHSPPLEVLHQNEHFAVVSKPPGMHCHRPEFGSRDPEFVMQKARDQLGRRVFLPHRLDRATSGCLLVGFSSQAAKVLHQTLAQPDSSKTYVAIVRGSGGAFVGKGWFTVDRPIKDEKKILREASTRFLFVRGGNDPDPRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGDCRFNREVADHRNSAPAGRLMLHCLRLSLPTLPHAGSQALKRATGRILSPETAPDKGTMTNDYDERKGKPERGHSARAGQQRGKRRSRKREGDHGNTRGVDGREARASGSVSEEVQAPVETEKAASNAGNPYPKPRSEFDSTGTPPVSIPRQEISTEPFVPTLAEISADVSPSVGKKESFRRGCRPRGIDGEAQEELVGEGFHVSAEPPDDMMAFLRGMSWWEEGLF 1581
            MLLSPAGAL V+LVL G LGLQQ RHRS VFERGTSTA IP N DVLPQ CAAARLHGDSCWEK TQT QPQGWRV R G SFA HSS                                       Q SPPLEVLHQNEHFAVVSKPPGMHCHRPEFGSRDP+FVMQKARDQLGRRVFLPHRLDRATSGCLLVGFSS AAKVLHQTLAQPDSSKTY+AIVRGSG AFVGKGWFTVDRPIKDEKKILREASTRFLFVRGGNDPDPRCC VLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGDCRFNREVA HRNSAPAGRLMLHCLRLSLPTLP  GSQALK ATGRILS    PDK TMTNDY   K K ERGH+ARAGQ+RG+R SRKRE  HGNT GVDGREARASGSVSEEVQ PVETEKAASN G+PYPKPRSEFDS  TPP S PRQEISTEPFVPTLAEISA +SPSVGKKES  RGCRPRGIDGEAQE+LV EGFHV AEPPDDMM FLRGMSWWEEGLF
Sbjct:    1 MLLSPAGALPVILVLGGTLGLQQKRHRSPVFERGTSTAFIPCNMDVLPQLCAAARLHGDSCWEK-TQTPQPQGWRVTRGGCSFAAHSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQSPPLEVLHQNEHFAVVSKPPGMHCHRPEFGSRDPDFVMQKARDQLGRRVFLPHRLDRATSGCLLVGFSSHAAKVLHQTLAQPDSSKTYLAIVRGSGSAFVGKGWFTVDRPIKDEKKILREASTRFLFVRGGNDPDPRCCFVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGDCRFNREVAGHRNSAPAGRLMLHCLRLSLPTLPDVGSQALKSATGRILS----PDKDTMTNDYCGSKRKSERGHNARAGQERGERPSRKREDGHGNTTGVDGREARASGSVSEEVQGPVETEKAASNTGDPYPKPRSEFDSARTPPASAPRQEISTEPFVPTLAEISAAISPSVGKKESSTRGCRPRGIDGEAQEDLVEEGFHVYAEPPDDMMEFLRGMSWWEEGLF 522
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1024.264.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LAN5_9STRA)

HSP 1 Score: 192 bits (487), Expect = 6.260e-53
Identity = 107/213 (50.23%), Postives = 131/213 (61.50%), Query Frame = 1 
Query:  397 LEVLHQNEHFAVVSKPPGMHCHRPEF-GSRDPEFVM-QKARDQLGRRVFLPHRLDRATSGCLLVGFSSQ-------AAKVLHQTLAQPDSSKTYVAIVRGSG----GAFVGKGWFTVDRPIKDEKKILREASTRFLFVRGGNDPDP--RCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGDCRFNREVADHRNSAPAGRLMLHCLRLSLP 990
            +E+L +  H A+ +KPP + CH  ++ G ++ E  M Q+ RD +GRRV L HRLDR  SGCLL   + +         KVL   L  P ++KTYVAIVRG G      F GKGWF +DRPIKDE  I   A T F FV G N  +   R  LVLA+PSTGR+HQIRRHLNGLSHPI+GDS HG+ R NRE  D     P  R+ LH  R+ LP
Sbjct:   55 VEILSRGPHHAIANKPPSVKCHNSDWTGPKNNEVAMLQRVRDTIGRRVNLIHRLDRGASGCLLASHAEENCDELRECTKVLSDALQSPLATKTYVAIVRGEGILKDEDFKGKGWFHIDRPIKDENGIENGAKTAFRFVAGVNRANDGVRASLVLARPSTGRWHQIRRHLNGLSHPILGDSTHGNSRTNREWRDR--GLPGERICLHLARIQLP 265
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1024.264.1 vs.
Match: Hypothetical (protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZM53_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.840e-49
Identity = 109/230 (47.39%), Postives = 141/230 (61.30%), Query Frame = 1 
Query:  370 LEPPQHSPPLEVLHQNEHFAVVSKPPGMHCHRPEFGSRDPEF-VMQKARDQLGRRVFLPHRLDRATSGCLLVGFSS--QAAKV---LHQTLAQPDSSKTYVAIVRGSG----------------GAFVGKGWFTVDRPIKDEKKILREASTRFLFVRG-GNDPDPRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGDCRFNREVADHRNSAPAGRLMLHCLRLSLP 990
            LEPP   PPLE+L++ + FA+V+KP G+  H  E+  +D    ++Q+ARD LGRRV L HRLDR  SGC++  ++    AA+V   L + LA     KTYVA+VRG G                G    +GWF VDRPIKD++     A+T F FV   G++   R  LV A+P+TGR+HQIRRHLNGLSHPI+GDS HG+ R NRE    R+  P  RL LH  R+SLP
Sbjct:   36 LEPP---PPLEILYEGDTFAIVAKPGGVPSHASEYIGKDYVVPLLQRARDALGRRVNLVHRLDRGASGCVICAYADLDDAAEVTTALGEALAA--GQKTYVALVRGEGFLREDLLEKAGADVPSGDLKREGWFVVDRPIKDDRGRENNATTTFKFVASTGSEDAARASLVAARPATGRWHQIRRHLNGLSHPILGDSSHGNSRTNREWRKERD-LPGARLCLHLCRISLP 259
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1024.264.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQ02_9STRA)

HSP 1 Score: 179 bits (454), Expect = 1.100e-47
Identity = 103/238 (43.28%), Postives = 139/238 (58.40%), Query Frame = 1 
Query:  424 FAVVSKPPGMHCHRPEF-------GSRDPEFVMQKARDQLGRRVFLPHRLDRATSGCLLVGFSSQA------------------------AKVLHQTLAQPDSSKTYVAIVRGS----GGAFVGKGWFTVDRPIKDEKKILREASTRFLFVRGGNDP-DPRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGDCRFNREVADHRNSAPAGRLMLHCLRLSLPTLPHAGSQALKRA 1029
            + VV+KPP + CHR ++       G+ +P  ++Q+ RDQ+GRRV L HRLDR  SGCLL+ F+  +                         + L  +LA   + KTYVA+VRG     G     +GWF VDRPI+D + + REA T+F FV G +D    R  +VLA+P TGR+HQIRRHLNGLSHPI+GDS HG+ R NRE    R   P  RL LH  ++SLP+L ++ +  L+ A
Sbjct:   78 YLVVAKPPAVACHRSDYIGRKAPDGTPEPPAMVQRIRDQVGRRVNLIHRLDRGASGCLLLAFAGDSRGEDEDGKDGEGGGEDSAERYRDTTRRLIASLADDRAVKTYVALVRGGPFLHGEDLRRRGWFAVDRPIRDARGVEREALTQFRFVAGTDDDCAARASIVLARPRTGRWHQIRRHLNGLSHPILGDSTHGNSRINREWRSKRG-LPGQRLCLHLAKMSLPSLENSETAGLEVA 314
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1024.264.1 vs.
Match: PseudoU_synth_2 (domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6G5_FISSO)

HSP 1 Score: 177 bits (449), Expect = 2.640e-47
Identity = 100/209 (47.85%), Postives = 132/209 (63.16%), Query Frame = 1 
Query:  397 LEVLHQNEHFAVVSKPPGMHCHRPEF-GSRDPEFV--MQKARDQLGRRVFLPHRLDRATSGCLLVGFSSQA-AKVLHQTLAQPDSSKTYVAIVRGSG----GAFVGKGWFTVDRPIKDEKKILREASTRFLFVRGGNDPD--PRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGDCRFNREVADHRNSAPAGRLMLHCLRLSLPT 993
            + +L +++ + VV KPP + CH  ++ GSR  + +  +Q+ R  +G R+ L HRLDR  SGCLLV +        L Q +A+ +++KTY+AIVRG G         KGWF VDRPIK+E+ +L EAST F FV G  + D  PR  LVLA+P TGR+HQIRRHLNGLSHPI+GDS HG+ + N+E    R   P  R  LH  RL L T
Sbjct:   58 ITILAKSDDYLVVDKPPSVVCHHSDWTGSRSQQEIPMLQRVRQAVGSRINLVHRLDRGCSGCLLVTYQKDGKTATLSQAMAE-NATKTYIAIVRGEGILRGEDLKEKGWFLVDRPIKNERGVLHEASTWFRFVAGQPEVDGQPRASLVLARPMTGRWHQIRRHLNGLSHPILGDSSHGNSKVNQEWRAQRGMLPE-RTCLHLARLQLST 264
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1024.264.1 vs.
Match: PseudoU_synth_2 (domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7F0_FISSO)

HSP 1 Score: 176 bits (445), Expect = 1.080e-46
Identity = 98/211 (46.45%), Postives = 132/211 (62.56%), Query Frame = 1 
Query:  397 LEVLHQNEHFAVVSKPPGMHCHRPEF-GSRDPEFV--MQKARDQLGRRVFLPHRLDRATSGCLLVGFSSQ---AAKVLHQTLAQPDSSKTYVAIVRGSG----GAFVGKGWFTVDRPIKDEKKILREASTRFLFVRGGNDPD--PRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGDCRFNREVADHRNSAPAGRLMLHCLRLSLPT 993
            + ++ +++ + VV KPP + CH  E+ GSR  + +  +Q+ R  +G R+ L HRLDR  SGCLLV +         +  Q +A+ +++KTY+A+VRG G         KGWF VDRPIK+E+ +L EAST F FV G  + D  PR  LVLA+P TGR+HQIRRHLNGLSHPI+GDS HG+ + N+E    R   P  R  LH  RL L T
Sbjct:   54 ITIVAKSDDYLVVDKPPSVVCHHSEWTGSRSQQEIPMLQRVRQAVGSRINLVHRLDRVCSGCLLVTYQKDDGDMTAIFSQAMAE-NATKTYIALVRGEGILHGEDLKQKGWFLVDRPIKNERGVLHEASTWFRFVAGQPEVDGQPRASLVLARPRTGRWHQIRRHLNGLSHPILGDSSHGNSKVNQEWRSQRGMLPE-RTCLHLARLQLST 262
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1024.264.1 vs.
Match: Pseudouridine (synthase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F626_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.420e-42
Identity = 94/227 (41.41%), Postives = 129/227 (56.83%), Query Frame = 1 
Query:  397 LEVLHQNEHFAVVSKPPGMHCHRPEFGSR-----------DPEFVMQKARDQLGRRVFLPHRLDRATSGCLLVGFSSQ------AAKVLHQTLAQPDSS-----KTYVAIVRGSG----GAFVGKGWFTVDRPIKDEKKILREASTRFLFVRG---GNDPDPRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGDCRFNREVADHRNSAPAGRLMLHCLRLSLP 990
            + +L + ++  VVSKP  + CHR ++  R           +   ++Q+ R+ +G +V L HRLDR  SGCLL  F+        A  ++ + +    SS     KTY+AIVRG G      F  +GWF VDRPIKDE   L+ A++ F F+ G   GN   PR  LVLA+  TGR+HQIR+HLNGLSHPI+GDS HG  + NRE  + +      R+ LH L+L LP
Sbjct:   12 VSILDRGDNHVVVSKPSAVICHRSDWTGRRNRKKESIITSEEVPMLQRVREAVGEKVNLVHRLDRGASGCLLFSFAKSDKDGGNATAIMQECMTNDSSSTSDTHKTYIAIVRGEGLLKGRDFRQEGWFEVDRPIKDESGNLKNATSYFRFIAGQDDGNGTRPRASLVLARIKTGRWHQIRKHLNGLSHPIIGDSTHGISKTNREWIE-KWDLKRERICLHLLKLELP 237
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1024.264.1 vs.
Match: PseudoU_synth_2 (domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1P7_9STRA)

HSP 1 Score: 166 bits (419), Expect = 2.220e-42
Identity = 100/229 (43.67%), Postives = 133/229 (58.08%), Query Frame = 1 
Query:  397 LEVLHQNEHFAVVSKPPGMHCHRPEFGS---------RDPEFV--MQKARDQLGRRVFLPHRLDRATSGCLLVGFSSQ------AAKVLHQTLAQPDSS-KTYVAIVRGSG----GAFVGKGWFTVDRPIKDEKKILREASTRFLFVRG-GNDPD-----PRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGDCRFNREVADHRNSAPAGRLMLHCLRLSLPTLP 999
            + +L +  +  VVSKPP + CHR ++           R P  V  +Q+AR+ +G RV L HRLDR  SGCLL+ F+        A  VL +++ +  SS KTY+A+VRG G      F  +GWF V RPIK+E   L+ A++ F F+ G GN+       PR  LVLA+  TGR+HQIR+HLNGLSHPI+GDS HG+ + NRE        P  R  LH L+L LP  P
Sbjct:   97 VSILDRGPNHLVVSKPPSVLCHRSDWSGSGKKRSAKQRGPPEVPMLQRAREAVGERVNLVHRLDRGASGCLLMSFAGSDENGGNATAVLQESMTRTSSSHKTYLALVRGEGILKGRDFRQEGWFEVSRPIKNEAGTLKNATSYFRFIAGQGNENGALEDVPRASLVLARIKTGRWHQIRKHLNGLSHPIIGDSTHGNSKTNREWRQKWGLEPE-RTCLHLLKLELPATP 324
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1024.264.1 vs.
Match: Predicted (protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYH0_PHATC)

HSP 1 Score: 163 bits (412), Expect = 3.860e-42
Identity = 99/221 (44.80%), Postives = 130/221 (58.82%), Query Frame = 1 
Query:  397 LEVLHQNEHFAVVSKPPGMHCHRPEF-GSRDPEF---VMQKARDQLGRR-VFLPHRLDRATSGCLLVGFSSQAAKV----------LHQTLAQPDSSKTYVAIVRGSG----GAFVGKGWFTVDRPIKDEKKILREASTRFLFVRG-----GNDPDPRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGDCRFNREVADHRNSAPAGRLMLHCLRLSL 987
            + +L + + + VV+KPP + CH  E+ GSR   F   ++Q+ R+ +G   V L HRL+   SGCLL+ +++  A            L  ++ +  S KTY+A+VRG G      F  +GWF VDRPIK+EK IL  A+T F FV G     G    PR  LVLA+P TGR+HQIRRHLNGLSHPI+GD+ HG+   NRE  D R   PA R  LH  RL L
Sbjct:   89 VTILARTDRYVVVAKPPTVVCHHSEWTGSRSDPFQIPMLQRTREAMGGNCVNLVHRLNWGCSGCLLLTYAADTADAEIYIPNTTATLIASMKETASLKTYLALVRGEGLLQGRDFKQEGWFKVDRPIKNEKGILNNATTWFRFVAGQDNDSGRINQPRASLVLARPETGRWHQIRRHLNGLSHPILGDTSHGNSHVNREWRDLRGM-PAQRTCLHLARLQL 308
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1024.264.1 vs.
Match: tRNA (pseudouridine(65) synthase TruC n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A4P5VYN8_9DELT)

HSP 1 Score: 151 bits (382), Expect = 1.550e-38
Identity = 88/203 (43.35%), Postives = 120/203 (59.11%), Query Frame = 1 
Query:  388 SPPLEVLHQNEHFAVVSKPPGMHCHRPEFGSRDPEFVMQKARDQLGRRVFLPHRLDRATSGCLLVGFSSQAAKVLHQTLAQPDSSKTYVAIVRGSGGAFVGKGWFTVDRPIKDEKKILREASTRFLFVRGGNDPDPRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGDCRFNREVADHRNSAPAGRLMLHCLRLSLPTL 996
            +P   VL +   + VV+KPP +  HR +F  R+P  V Q  RD +G+ VF  HRLDR  SGCLL  FS++ +       A  +  KTY+A VRG+   FV +    +DRP+ D+K I+REAS+    + G ++P  RC L+   P TGR+HQ+RRH+  L+HPI+GD  HGD R N+  A    S    RL LHC  LS+P L
Sbjct:    4 APLCAVLAEGNGWIVVAKPPNLLTHRNDFTPREPAAV-QSVRDMIGKHVFPIHRLDRGASGCLL--FSTEQSHTGALAAAFAEGQKTYLAFVRGN---FVSRERVFIDRPMADDKGIVREASSWVTRLAGSDEP--RCSLLHVAPETGRYHQVRRHVRDLTHPIIGDGDHGDHRQNKAWAA---SHGVTRLGLHCATLSVPWL 195
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1024.264.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PseudoU_synth_22.980e-29481.59domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Hypothetical6.260e-5350.23protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
Hypothetical1.840e-4947.39protein n=2 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical1.100e-4743.28protein n=1 Tax=Corethron hystrix TaxID=216773 Rep... [more]
PseudoU_synth_22.640e-4747.85domain-containing protein n=1 Tax=Fistulifera sola... [more]
PseudoU_synth_21.080e-4646.45domain-containing protein n=1 Tax=Fistulifera sola... [more]
Pseudouridine1.420e-4241.41synthase (Fragment) n=1 Tax=Fragilariopsis cylindr... [more]
PseudoU_synth_22.220e-4243.67domain-containing protein n=1 Tax=Pseudo-nitzschia... [more]
Predicted3.860e-4244.80protein n=1 Tax=Phaeodactylum tricornutum (strain ... [more]
tRNA1.550e-3843.35pseudouridine(65) synthase TruC n=1 Tax=Deltaprote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1024contigEcto-sp9_F_contig1024:18586..23045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score936.4
Seed ortholog evalue5.8e-270
Seed eggNOG ortholog2880.D7G7M0
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0564@1,KOG1919@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionRNA pseudouridylate synthase domain-containing protein
Ec32 orthologEc-22_001870.1
Exons6
Model size1681
Cds size1584
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928220.6923172-UTR-Ecto-sp9_F_contig1024:18585..186821622928220.6923172-UTR-Ecto-sp9_F_contig1024:18585..18682Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1024 18586..18682 -
1692277800.6614327-UTR-Ecto-sp9_F_contig1024:18585..186821692277800.6614327-UTR-Ecto-sp9_F_contig1024:18585..18682Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1024 18586..18682 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928220.720846-CDS-Ecto-sp9_F_contig1024:18682..194331622928220.720846-CDS-Ecto-sp9_F_contig1024:18682..19433Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1024 18683..19433 -
1692277800.6744945-CDS-Ecto-sp9_F_contig1024:18682..194331692277800.6744945-CDS-Ecto-sp9_F_contig1024:18682..19433Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1024 18683..19433 -
1622928220.7379012-CDS-Ecto-sp9_F_contig1024:19689..198171622928220.7379012-CDS-Ecto-sp9_F_contig1024:19689..19817Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1024 19690..19817 -
1692277800.6884036-CDS-Ecto-sp9_F_contig1024:19689..198171692277800.6884036-CDS-Ecto-sp9_F_contig1024:19689..19817Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1024 19690..19817 -
1622928220.7515595-CDS-Ecto-sp9_F_contig1024:20015..201141622928220.7515595-CDS-Ecto-sp9_F_contig1024:20015..20114Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1024 20016..20114 -
1692277800.7021987-CDS-Ecto-sp9_F_contig1024:20015..201141692277800.7021987-CDS-Ecto-sp9_F_contig1024:20015..20114Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1024 20016..20114 -
1622928220.7714305-CDS-Ecto-sp9_F_contig1024:20353..204511622928220.7714305-CDS-Ecto-sp9_F_contig1024:20353..20451Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1024 20354..20451 -
1692277800.7129087-CDS-Ecto-sp9_F_contig1024:20353..204511692277800.7129087-CDS-Ecto-sp9_F_contig1024:20353..20451Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1024 20354..20451 -
1622928220.782924-CDS-Ecto-sp9_F_contig1024:20708..207881622928220.782924-CDS-Ecto-sp9_F_contig1024:20708..20788Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1024 20709..20788 -
1692277800.7223299-CDS-Ecto-sp9_F_contig1024:20708..207881692277800.7223299-CDS-Ecto-sp9_F_contig1024:20708..20788Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1024 20709..20788 -
1622928220.7988758-CDS-Ecto-sp9_F_contig1024:22617..230451622928220.7988758-CDS-Ecto-sp9_F_contig1024:22617..23045Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1024 22618..23045 -
1692277800.7357628-CDS-Ecto-sp9_F_contig1024:22617..230451692277800.7357628-CDS-Ecto-sp9_F_contig1024:22617..23045Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1024 22618..23045 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1024.264.1prot_Ecto-sp9_F_contig1024.264.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1024 18683..23045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1024.264.1

>prot_Ecto-sp9_F_contig1024.264.1 ID=prot_Ecto-sp9_F_contig1024.264.1|Name=mRNA_Ecto-sp9_F_contig1024.264.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=528bp
MLLSPAGALRVMLVLRGALGLQQIRHRSRVFERGTSTAIIPYNKDVLPQT
CAAARLHGDSCWEKKTQTLQPQGWRVAREGFSFAVHSSSSTATEDELSDG
SSRRRQARNSEKNRAGRNNSRPSLEPPQHSPPLEVLHQNEHFAVVSKPPG
MHCHRPEFGSRDPEFVMQKARDQLGRRVFLPHRLDRATSGCLLVGFSSQA
AKVLHQTLAQPDSSKTYVAIVRGSGGAFVGKGWFTVDRPIKDEKKILREA
STRFLFVRGGNDPDPRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHG
DCRFNREVADHRNSAPAGRLMLHCLRLSLPTLPHAGSQALKRATGRILSP
ETAPDKGTMTNDYDERKGKPERGHSARAGQQRGKRRSRKREGDHGNTRGV
DGREARASGSVSEEVQAPVETEKAASNAGNPYPKPRSEFDSTGTPPVSIP
RQEISTEPFVPTLAEISADVSPSVGKKESFRRGCRPRGIDGEAQEELVGE
GFHVSAEPPDDMMAFLRGMSWWEEGLF*
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mRNA from alignment at Ecto-sp9_F_contig1024:18586..23045-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1024.264.1 ID=mRNA_Ecto-sp9_F_contig1024.264.1|Name=mRNA_Ecto-sp9_F_contig1024.264.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4460bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1024:18586..23045- (Ectocarpus species9 EcSCA_722f female)
ATGTTGCTGTCACCTGCCGGAGCTTTGCGGGTGATGCTGGTGCTGCGTGG
TGCGCTGGGCCTTCAGCAGATACGCCACCGATCGCGAGTGTTCGAGCGAG
GCACCTCTACCGCCATCATCCCGTACAACAAGGACGTCTTGCCACAAACA
TGTGCTGCTGCGCGGTTGCACGGGGATAGCTGTTGGGAGAAGAAGACGCA
GACACTGCAACCACAAGGCTGGCGCGTAGCGCGGGAAGGCTTTTCTTTTG
CCGTCCACTCTTCATCATCAACCGCGACAGAGGATGAATTATCGGATGGC
TCGTCTCGTAGGCGGCAGGCACGCAACAGCGAGAAAAATAGAGCGGGACG
CAACAACAGCCGCCCGTCTTTGGAGCCCCCTCAGCATTCGCCTCCGTTGG
AGGTCCTCCATCAAAACGAGCACTTCGCGTGAGCATAATGCGCATATGGC
ATGTCGCTTTCTGTAGAGGGAAAGGGACCGAGGTGGCAAGGGCTCGTTTC
CCTGGCGAAGGCGGGCGTGGTTGTATGTGCCAATTCACCCTGCTGCTGGA
GAATTTTGTGGCCAAAGCCTTCGTGGTTGAAGTCTGTTTGCCTTCCTCGT
GTTTTTGGCTGGCGTACGTCTTACAACCCTCACGGATGCTCGACACGTTT
GGCGACCAGCCTCATGTTGTGCACCCACTGATGTCTACTTCGTACTACGT
ATTCTTTTTTACCACTACAATCGTGGCTCCGTGGTGTGACAACGGCTCTC
CACCCTCTTCTAAGGGAGCCCCCTCTTGTATCGGTAAAAGAGGGTTACCC
TCATGTATGAGGGTGCTCAATAGTAGGGTACCCTCTTGTAAAGGGAAAAT
CGGGAAATCTCGAGCAACAAAGGCACTTTGACTACGGCACAGCGTACAAG
TATGCCGTGCACGTGTATAAGCATGTATGTTGTGTGGTGGACTGTAAAGC
ACGTGTGGTGGGCTGGTTCCCCGAATTCACACGCCCAAAGCAAGCCGGGT
GATTGTGATCGTATCGGCAACGCTTTCCGTTTTGTATTTTTTTCGTTCAT
GGAGTGAGGGAACATCTGCAGAGAATAATTGCCTCGCAGCCAAGTTGACG
CAGCCATTGATACTAGGAGGTACATGTTCATGCATGAATTTAACACGCGT
AGTCTACAGAGTCGAACAACATGTTACAATTCCTCGACACCTCTCCGACC
ACGAGAAACTAACTTCATGCAAGTGTTGTATTGCACCAACAAACGGTCTA
CCTCCCCCTGGCTCCTGGCGCACACCAACATACACACATTGCCCATATTT
ACTTAGAGGAGAACTACTAAGGTCTGCGCTCCAGGTCTTGAACCGTATGC
TGAAAGGAACGAAATTCTAGCCTAGCGCAAACGGCCCCCCTGTTTCTACT
TGGCGCCGCGATGTGTGTGTGTGTGCGCGTGTGTTTTATTATACCTTTAT
TGTTAGCATCGACCGCGCTAACCAGCTAACCAATGAAAGCACGTTGGTCT
CAGTGCGGCCATGGTCTGGGACCCCATGAGGGGGCGCCATGCGGGAGGCT
AAGCTACTCTCCAGATTAAAGATAAATAAGGTGGCAATAGAAGAAAGCTG
CACGTGTTTACCCAAGGCTGCTACTTTGCACATGTGTTCGTTTCAGAGTG
CTTTCAGCATCTTTGCTCCATCCTCCTTGCATTTGCCACCAGTTTCACCA
AAAAACCACAATTCTTTGGCAGCTCCTCTCTGGTCTATTCTTCCTGCGGC
GTTGTTGTGAGGAAGATGTGATTTTGTGTTATCGAAAGGCCGGGGGAGCC
ACACACCAGCGACAGGCCCTCACTTTCAAGCCCCCTATAGTGCGGTAAAC
CCCCTCTATAGTGGGGTGACCCCACTATAAAGGGTCCGGTCTCTGTATAA
GAGGGTGACCCTACTGTAGCGAGTCGAGTCCGTGACAACCGGTTTCGACC
CTCTTATATCGGAGCCCCCTCTTGTAAGGTACCCTCCTATAACGGAGCCA
CGACTGTATCTGCAGAGCGAAAGCCGTTCCTTGTCCGATCAAAACCACCC
CCGCCCCATTCCCGTGCCTCCACCCCTTCTTAAACCCCTCCTCCGTTTGT
TTGCTTTTTCATTCCCGGACGACTTTTTTTTTGCAGTACGAGTTGTTGCG
ACGGCTTTATTTCTTGGTGCCCGCGCGCATGCCGTTACAGGTACGCGCGT
CCCCTTAATCCTAACCGTAACCCTAACCCCAACCCTTTCTTGTTACGACG
GCTGCAGTGTGGTCTCCAAGCCGCCAGGGATGCATTGTCATCGCCCTGAG
TTTGGCTCTCGCGATCCCGAATTCGTGATGCAGAAGGGTACGTCCAGCAT
GTGTACACTGCACTACAGTACACAGACCAAATGCATAAATTAAAAAACCC
ACCCGACGGCTCGATCTTGAAGCGACGTGCGCCCTAGCCAATTGCTTGCT
GCGTTTCGAAGCAGTAGGGGTGAGAAAGGATTTTGGCTCCTTGTTGCATG
GGTTTTTGTTGCATGGAACGGTTACATGTTACGAAATTATCTCTTGGCTG
CCTAATGTGCCCGTTCGCGTGATCACGCACACCTTGGCCGAAAGCTCGCG
ACCAGCTAGGGCGCCGCGTTTTTCTACCTCATCGTTTGGACCGCGCCACA
TCTGGATGTCTTTTGGTGGGCTTCAGTTCCCAAGCAGCCAAGGTACGCCC
AAGCAGCGATGAGCAATATTTGAACGAGATCCTGTTCCGTGGCAAGTCGC
TTACAGAACGATTTCGTACAGGCTTGTCGGCAAGGATCACGTTGATGCTT
GCGACTGACTGTAACGGGCACGTAAAATCCCATGTTTTTCCAGTGCCACA
CACATGTTTTTCAGACCAGGTCGCGAGCTTTCGATAGGGATTGAGAGCAA
CTCTGCGTGTTCATGGCTCATGCACCAACAGGTGCTCCATCAAACGCTTG
CCCAACCAGACTCCAGCAAGACGTACGTGGCGATCGTGAGGGGTAGCGGG
GGCGCATTTGTCGGCAAGGGGTGGTTCACGGTAAGATTTTTCTTCCGTGG
TATCGCTCGATTCATGTGCCTTTTCCGTGAAACTCTCCCTGTGGAGGTCT
CGAAATACGAAGAAAGCAGGTCGTTTTTTCTCTAGCAAAGAATGCGTGCA
TGCAGGAATTGACAGTGGTTGATAAAAATGTTACTTGTGTCAATTAAACA
TTGTGTCGACGACCACCGACCCATTCAGGTGGACAGGCCAATCAAGGATG
AGAAGAAGATTTTGAGGGAGGCGTCAACGCGCTTTCTCTTCGTGAGGGGT
GGAAACGACCCTGATCCCAGGTGCTGTCTCGTGCTCGCACAGCCTTCCAC
TGGACGGTGAGCGAACGTTTATTTTGCGTCGCCATTCTTGTGTTGTTCGA
TTGTCAAACATAGGAAAATCGGTCTCGTGCAGCGCAAAAAAGCGACCGCA
TAACTGCAAGAAATGTCTCTCCAATGCCATCATGACCACGCGCTCATGGA
TGACCAAGCAGTGGACGCCAGTTGACCTGCCCCGTGCAACATCGAAGCGA
ATAGGTTTTATGTGATTCAGGAGTTCCCCCCCTCCGGCATTTGTGCCCGT
GTGTCCTTTCAGGTTTCACCAGATCCGAAGGCACCTGAACGGGCTCAGCC
ATCCCATCGTGGGCGACTCTGTGCATGGGGACTGCCGCTTCAACCGAGAG
GTGGCTGATCACCGCAACTCGGCACCCGCCGGGCGATTGATGCTCCACTG
CCTCCGGTTGTCACTACCGACATTGCCGCACGCGGGATCACAGGCTTTGA
AACGCGCAACAGGGCGAATATTGTCGCCGGAGACGGCGCCGGACAAAGGC
ACGATGACGAACGACTACGACGAGAGAAAAGGAAAACCAGAGAGGGGGCA
CAGCGCCCGAGCTGGGCAGCAGAGAGGCAAACGCCGTAGTCGGAAAAGAG
AGGGTGACCACGGCAATACCAGGGGGGTCGATGGCAGGGAAGCTAGAGCA
TCTGGCTCTGTCTCGGAGGAAGTGCAGGCTCCCGTCGAAACTGAGAAAGC
AGCTTCTAACGCCGGCAACCCGTACCCCAAACCCCGTTCGGAATTTGATT
CAACCGGAACGCCCCCGGTCTCCATCCCGCGCCAAGAAATATCAACCGAA
CCATTCGTTCCCACTCTGGCTGAGATCAGTGCGGACGTTTCACCGTCGGT
AGGGAAGAAAGAGAGTTTCAGAAGAGGTTGTAGACCTCGTGGCATTGACG
GGGAGGCACAAGAGGAGCTTGTGGGAGAAGGTTTCCACGTGTCCGCCGAG
CCGCCAGATGACATGATGGCATTCTTGCGGGGCATGTCTTGGTGGGAGGA
GGGTTTGTTTTGATGGAGTGCGCTACGAAGAAAATGTTTTGGGAACTTAT
GATATCGGCACTCCAAGGCACGGAAAGAGAACCACTGCTTCCGACCACTT
TCGACTTCAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1024:18586..23045-

>mRNA_Ecto-sp9_F_contig1024.264.1 ID=mRNA_Ecto-sp9_F_contig1024.264.1|Name=mRNA_Ecto-sp9_F_contig1024.264.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3168bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1024:18586..23045- (Ectocarpus species9 EcSCA_722f female)
ATGTTGCTGTCACCTGCCGGAGCTTTGCGGGTGATGCTGGTGCTGCGTGG
TGCGCTGGGCCTTCAGCAGATACGCCACCGATCGCGAGTGTTCGAGCGAG
GCACCTCTACCGCCATCATCCCGTACAACAAGGACGTCTTGCCACAAACA
TGTGCTGCTGCGCGGTTGCACGGGGATAGCTGTTGGGAGAAGAAGACGCA
GACACTGCAACCACAAGGCTGGCGCGTAGCGCGGGAAGGCTTTTCTTTTG
CCGTCCACTCTTCATCATCAACCGCGACAGAGGATGAATTATCGGATGGC
TCGTCTCGTAGGCGGCAGGCACGCAACAGCGAGAAAAATAGAGCGGGACG
CAACAACAGCCGCCCGTCTTTGGAGCCCCCTCAGCATTCGCCTCCGTTGG
AGGTCCTCCATCAAAACGAGCACTTCGCATGTTGCTGTCACCTGCCGGAG
CTTTGCGGGTGATGCTGGTGCTGCGTGGTGCGCTGGGCCTTCAGCAGATA
CGCCACCGATCGCGAGTGTTCGAGCGAGGCACCTCTACCGCCATCATCCC
GTACAACAAGGACGTCTTGCCACAAACATGTGCTGCTGCGCGGTTGCACG
GGGATAGCTGTTGGGAGAAGAAGACGCAGACACTGCAACCACAAGGCTGG
CGCGTAGCGCGGGAAGGCTTTTCTTTTGCCGTCCACTCTTCATCATCAAC
CGCGACAGAGGATGAATTATCGGATGGCTCGTCTCGTAGGCGGCAGGCAC
GCAACAGCGAGAAAAATAGAGCGGGACGCAACAACAGCCGCCCGTCTTTG
GAGCCCCCTCAGCATTCGCCTCCGTTGGAGGTCCTCCATCAAAACGAGCA
CTTCGCTGTGGTCTCCAAGCCGCCAGGGATGCATTGTCATCGCCCTGAGT
TTGGCTCTCGCGATCCCGAATTCGTGATGCAGAAGGTGTGGTCTCCAAGC
CGCCAGGGATGCATTGTCATCGCCCTGAGTTTGGCTCTCGCGATCCCGAA
TTCGTGATGCAGAAGGCTCGCGACCAGCTAGGGCGCCGCGTTTTTCTACC
TCATCGTTTGGACCGCGCCACATCTGGATGTCTTTTGGTGGGCTTCAGTT
CCCAAGCAGCCAAGCTCGCGACCAGCTAGGGCGCCGCGTTTTTCTACCTC
ATCGTTTGGACCGCGCCACATCTGGATGTCTTTTGGTGGGCTTCAGTTCC
CAAGCAGCCAAGGTGCTCCATCAAACGCTTGCCCAACCAGACTCCAGCAA
GACGTACGTGGCGATCGTGAGGGGTAGCGGGGGCGCATTTGTCGGCAAGG
GGTGGTTCACGGTGCTCCATCAAACGCTTGCCCAACCAGACTCCAGCAAG
ACGTACGTGGCGATCGTGAGGGGTAGCGGGGGCGCATTTGTCGGCAAGGG
GTGGTTCACGGTGGACAGGCCAATCAAGGATGAGAAGAAGATTTTGAGGG
AGGCGTCAACGCGCTTTCTCTTCGTGAGGGGTGGAAACGACCCTGATCCC
AGGTGCTGTCTCGTGCTCGCACAGCCTTCCACTGGACGGTGGACAGGCCA
ATCAAGGATGAGAAGAAGATTTTGAGGGAGGCGTCAACGCGCTTTCTCTT
CGTGAGGGGTGGAAACGACCCTGATCCCAGGTGCTGTCTCGTGCTCGCAC
AGCCTTCCACTGGACGGTTTCACCAGATCCGAAGGCACCTGAACGGGCTC
AGCCATCCCATCGTGGGCGACTCTGTGCATGGGGACTGCCGCTTCAACCG
AGAGGTGGCTGATCACCGCAACTCGGCACCCGCCGGGCGATTGATGCTCC
ACTGCCTCCGGTTGTCACTACCGACATTGCCGCACGCGGGATCACAGGCT
TTGAAACGCGCAACAGGGCGAATATTGTCGCCGGAGACGGCGCCGGACAA
AGGCACGATGACGAACGACTACGACGAGAGAAAAGGAAAACCAGAGAGGG
GGCACAGCGCCCGAGCTGGGCAGCAGAGAGGCAAACGCCGTAGTCGGAAA
AGAGAGGGTGACCACGGCAATACCAGGGGGGTCGATGGCAGGGAAGCTAG
AGCATCTGGCTCTGTCTCGGAGGAAGTGCAGGCTCCCGTCGAAACTGAGA
AAGCAGCTTCTAACGCCGGCAACCCGTACCCCAAACCCCGTTCGGAATTT
GATTCAACCGGAACGCCCCCGGTCTCCATCCCGCGCCAAGAAATATCAAC
CGAACCATTCGTTCCCACTCTGGCTGAGATCAGTGCGGACGTTTCACCGT
CGGTAGGGAAGAAAGAGAGTTTCAGAAGAGGTTGTAGACCTCGTGGCATT
GACGGGGAGGCACAAGAGGAGCTTGTGGGAGAAGGTTTCCACGTGTCCGC
CGAGCCGCCAGATGACATGATGGCATTCTTGCGGGGCATGTCTTGGTGGG
AGGAGGGTTTGTTTTGAGTTTCACCAGATCCGAAGGCACCTGAACGGGCT
CAGCCATCCCATCGTGGGCGACTCTGTGCATGGGGACTGCCGCTTCAACC
GAGAGGTGGCTGATCACCGCAACTCGGCACCCGCCGGGCGATTGATGCTC
CACTGCCTCCGGTTGTCACTACCGACATTGCCGCACGCGGGATCACAGGC
TTTGAAACGCGCAACAGGGCGAATATTGTCGCCGGAGACGGCGCCGGACA
AAGGCACGATGACGAACGACTACGACGAGAGAAAAGGAAAACCAGAGAGG
GGGCACAGCGCCCGAGCTGGGCAGCAGAGAGGCAAACGCCGTAGTCGGAA
AAGAGAGGGTGACCACGGCAATACCAGGGGGGTCGATGGCAGGGAAGCTA
GAGCATCTGGCTCTGTCTCGGAGGAAGTGCAGGCTCCCGTCGAAACTGAG
AAAGCAGCTTCTAACGCCGGCAACCCGTACCCCAAACCCCGTTCGGAATT
TGATTCAACCGGAACGCCCCCGGTCTCCATCCCGCGCCAAGAAATATCAA
CCGAACCATTCGTTCCCACTCTGGCTGAGATCAGTGCGGACGTTTCACCG
TCGGTAGGGAAGAAAGAGAGTTTCAGAAGAGGTTGTAGACCTCGTGGCAT
TGACGGGGAGGCACAAGAGGAGCTTGTGGGAGAAGGTTTCCACGTGTCCG
CCGAGCCGCCAGATGACATGATGGCATTCTTGCGGGGCATGTCTTGGTGG
GAGGAGGGTTTGTTTTGA
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