mRNA_Ecto-sp9_F_contig1024.261.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1024.261.1
Unique NamemRNA_Ecto-sp9_F_contig1024.261.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1024.261.1 vs.
Match: ABC (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L581_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 2.600e-69
Identity = 125/128 (97.66%), Postives = 127/128 (99.22%), Query Frame = -1 
Query:    1 AAGPKLTAWVRNGVKASASSMMSAEEIAALGDGERLQSLAEHCGCLGEAGDASARRRAAVAVAKSIAASNAEAPWVEAQLREFLPEGNVPAAREGALLAIHAICELAGPGGEPYVVALLPLVLQANGA 384
            AAGPKLTAWVRNGVKASASSMMSAEEIAALGDGERLQSLAEHCGCLGEAGDASARRRAAVAVA+SIAASNAEAPWVEAQLREFLPEGN PAAREGALLAIHA+CELAGPGGEPYVVALLPLVLQANGA
Sbjct:  238 AAGPKLTAWVRNGVKASASSMMSAEEIAALGDGERLQSLAEHCGCLGEAGDASARRRAAVAVARSIAASNAEAPWVEAQLREFLPEGNAPAAREGALLAIHAMCELAGPGGEPYVVALLPLVLQANGA 365
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1024.261.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGS6_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.810e-19
Identity = 52/97 (53.61%), Postives = 66/97 (68.04%), Query Frame = -1 
Query:    7 LGDGERLQSLAEHCGCLGEAGDASARRRAAVAVAKSIAASNAEAPWVEAQLREFLPEGNVPAAREGALLAIHAICELAGPGGEPYVVALLPLVLQAN 297
            +GD ERL+ L+  C  L        RRRAAVA+A++IAAS+AEAPWVEAQL  FL + + P AREGALLA+ A  +LA    EP++ ALLP  L A+
Sbjct:    1 MGDSERLERLSTLCLMLSGEETGEGRRRAAVAIAEAIAASSAEAPWVEAQLAGFLADASAPTAREGALLAVQAQSQLARHAAEPFLAALLPATLAAH 97
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1024.261.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
ABC2.600e-6997.66protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
P-loop1.810e-1953.61containing nucleoside triphosphate hydrolase prote... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1024contigEcto-sp9_F_contig1024:1662..2086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size425
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928220.13593-CDS-Ecto-sp9_F_contig1024:1661..20841622928220.13593-CDS-Ecto-sp9_F_contig1024:1661..2084Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1024 1662..2084 +
1692277800.3974936-CDS-Ecto-sp9_F_contig1024:1661..20841692277800.3974936-CDS-Ecto-sp9_F_contig1024:1661..2084Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1024 1662..2084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1024.261.1prot_Ecto-sp9_F_contig1024.261.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1024 1662..2084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1024.261.1

>prot_Ecto-sp9_F_contig1024.261.1 ID=prot_Ecto-sp9_F_contig1024.261.1|Name=mRNA_Ecto-sp9_F_contig1024.261.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=141bp
RPVGLQHQRQQGHHVRLPAGPGELADGVDRQEGSLPGGRHVSLGEELAEL
GLDPGGLGVRSGDRLGDRDGCSSSSRRVAGLPQAPAVLRQALEPLPVPKS
GYLLRGHHARGRGLDAVPDPRRELRAGGGSRLRAGGGGGDR
back to top

mRNA from alignment at Ecto-sp9_F_contig1024:1662..2086+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1024.261.1 ID=mRNA_Ecto-sp9_F_contig1024.261.1|Name=mRNA_Ecto-sp9_F_contig1024.261.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=425bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1024:1662..2086+ (Ectocarpus species9 EcSCA_722f female)
CGCCCCGTTGGCCTGCAGCACCAGCGGCAGCAGGGCCACCACGTACGGCT
CCCCGCCGGGCCCGGCGAGCTCGCAGATGGCGTGGATCGCCAGGAGGGCT
CCCTCCCGGGCGGCCGGCACGTTTCCCTCGGGGAGGAACTCGCGGAGCTG
GGCCTCGACCCAGGGGGCCTCGGCGTTCGAAGCGGCGATCGACTTGGCGA
CCGCGACGGCTGCTCTTCGTCGAGCAGACGCGTCGCCGGCCTCCCCCAGG
CACCCGCAGTGCTCCGCCAGGCTCTGGAGCCGCTCCCCGTCCCCAAGAGC
GGCTATCTCCTCCGCGGACATCATGCTCGAGGCCGAGGCCTTGACGCCGT
TCCGGACCCACGCCGTGAGCTTCGGGCCGGCGGCGGCAGCCGTCTGCGCG
CGGGCGGCGGCGGCGGCGACCGTCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1024:1662..2086+

>mRNA_Ecto-sp9_F_contig1024.261.1 ID=mRNA_Ecto-sp9_F_contig1024.261.1|Name=mRNA_Ecto-sp9_F_contig1024.261.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=846bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1024:1662..2086+ (Ectocarpus species9 EcSCA_722f female)
CGCCCCGTTGGCCTGCAGCACCAGCGGCAGCAGGGCCACCACGTACGGCT
CCCCGCCGGGCCCGGCGAGCTCGCAGATGGCGTGGATCGCCAGGAGGGCT
CCCTCCCGGGCGGCCGGCACGTTTCCCTCGGGGAGGAACTCGCGGAGCTG
GGCCTCGACCCAGGGGGCCTCGGCGTTCGAAGCGGCGATCGACTTGGCGA
CCGCGACGGCTGCTCTTCGTCGAGCAGACGCGTCGCCGGCCTCCCCCAGG
CACCCGCAGTGCTCCGCCAGGCTCTGGAGCCGCTCCCCGTCCCCAAGAGC
GGCTATCTCCTCCGCGGACATCATGCTCGAGGCCGAGGCCTTGACGCCGT
TCCGGACCCACGCCGTGAGCTTCGGGCCGGCGGCGGCAGCCGTCTGCGCG
CGGGCGGCGGCGGCGGCGACCGTCGCCCCGTTGGCCTGCAGCACCAGCGG
CAGCAGGGCCACCACGTACGGCTCCCCGCCGGGCCCGGCGAGCTCGCAGA
TGGCGTGGATCGCCAGGAGGGCTCCCTCCCGGGCGGCCGGCACGTTTCCC
TCGGGGAGGAACTCGCGGAGCTGGGCCTCGACCCAGGGGGCCTCGGCGTT
CGAAGCGGCGATCGACTTGGCGACCGCGACGGCTGCTCTTCGTCGAGCAG
ACGCGTCGCCGGCCTCCCCCAGGCACCCGCAGTGCTCCGCCAGGCTCTGG
AGCCGCTCCCCGTCCCCAAGAGCGGCTATCTCCTCCGCGGACATCATGCT
CGAGGCCGAGGCCTTGACGCCGTTCCGGACCCACGCCGTGAGCTTCGGGC
CGGCGGCGGCAGCCGTCTGCGCGCGGGCGGCGGCGGCGGCGACCGT
back to top