mRNA_Ecto-sp9_F_contig10223.248.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10223.248.1
Unique NamemRNA_Ecto-sp9_F_contig10223.248.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10223.248.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10223contigEcto-sp9_F_contig10223:1082..1615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size534
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10223.248.1prot_Ecto-sp9_F_contig10223.248.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10223 1192..1491 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928219.057173-UTR-Ecto-sp9_F_contig10223:1081..11911622928219.057173-UTR-Ecto-sp9_F_contig10223:1081..1191Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10223 1082..1191 +
1692277799.8525882-UTR-Ecto-sp9_F_contig10223:1081..11911692277799.8525882-UTR-Ecto-sp9_F_contig10223:1081..1191Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10223 1082..1191 +
1622928219.0890384-UTR-Ecto-sp9_F_contig10223:1491..16151622928219.0890384-UTR-Ecto-sp9_F_contig10223:1491..1615Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10223 1492..1615 +
1692277799.8796372-UTR-Ecto-sp9_F_contig10223:1491..16151692277799.8796372-UTR-Ecto-sp9_F_contig10223:1491..1615Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10223 1492..1615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928219.0776317-CDS-Ecto-sp9_F_contig10223:1191..14911622928219.0776317-CDS-Ecto-sp9_F_contig10223:1191..1491Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10223 1192..1491 +
1692277799.862567-CDS-Ecto-sp9_F_contig10223:1191..14911692277799.862567-CDS-Ecto-sp9_F_contig10223:1191..1491Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10223 1192..1491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10223.248.1

>prot_Ecto-sp9_F_contig10223.248.1 ID=prot_Ecto-sp9_F_contig10223.248.1|Name=mRNA_Ecto-sp9_F_contig10223.248.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=100bp
MKVSSEICLLFYSSRLSCGWIPGECSGSHVWLALTTPSRDRTLNTEPDPP
FFLEVFGARCRSWLTSELRFTPSTLRYTHASSRLLQELLFLCVMDERGL*
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mRNA from alignment at Ecto-sp9_F_contig10223:1082..1615+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10223.248.1 ID=mRNA_Ecto-sp9_F_contig10223.248.1|Name=mRNA_Ecto-sp9_F_contig10223.248.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=534bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10223:1082..1615+ (Ectocarpus species9 EcSCA_722f female)
CTGTTTTTGTCTTCTTTTTTTTTGCCGGGTTTGCGCAGTGGGAAAACGGG
CGCGTGCGTCCGTTTTTACCTGTGATTCCTTCGACGTTTTGTGGACCCCC
CCACCCCTCAATGAAAGTATCCAGCGAAATCTGTCTTTTGTTTTATTCTT
CGAGACTGTCGTGCGGATGGATACCGGGTGAATGTTCTGGCTCGCATGTC
TGGTTAGCTCTCACGACGCCAAGCAGAGATCGAACCTTGAACACCGAACC
TGACCCTCCTTTTTTTCTGGAGGTGTTTGGCGCACGTTGCCGTTCTTGGT
TGACGAGCGAGCTAAGGTTCACGCCGTCGACCCTTCGATATACACATGCA
TCAAGTAGATTGTTGCAAGAGCTGCTCTTCCTTTGTGTCATGGATGAGCG
AGGCTTATGATCAGCGATTCAAACTGCTCGGCTGCACTCGCTCCTAGCAA
AACGCGAACCTTGTACGACTGTAGATCGTCGGAGTCCCAGTCGCGACAAC
ACAGTATGGCGCACGACAAAACTCTCAAAGCCAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10223:1082..1615+

>mRNA_Ecto-sp9_F_contig10223.248.1 ID=mRNA_Ecto-sp9_F_contig10223.248.1|Name=mRNA_Ecto-sp9_F_contig10223.248.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10223:1082..1615+ (Ectocarpus species9 EcSCA_722f female)
ATGAAAGTATCCAGCGAAATCTGTCTTTTGTTTTATTCTTCGAGACTGTC
GTGCGGATGGATACCGGGTGAATGTTCTGGCTCGCATGTCTGGTTAGCTC
TCACGACGCCAAGCAGAGATCGAACCTTGAACACCGAACCTGACCCTCCT
TTTTTTCTGGAGGTGTTTGGCGCACGTTGCCGTTCTTGGTTGACGAGCGA
GCTAAGGTTCACGCCGTCGACCCTTCGATATACACATGCATCAAGTAGAT
TGTTGCAAGAGCTGCTCTTCCTTTGTGTCATGGATGAGCGAGGCTTATGA
ATGAAAGTATCCAGCGAAATCTGTCTTTTGTTTTATTCTTCGAGACTGTC
GTGCGGATGGATACCGGGTGAATGTTCTGGCTCGCATGTCTGGTTAGCTC
TCACGACGCCAAGCAGAGATCGAACCTTGAACACCGAACCTGACCCTCCT
TTTTTTCTGGAGGTGTTTGGCGCACGTTGCCGTTCTTGGTTGACGAGCGA
GCTAAGGTTCACGCCGTCGACCCTTCGATATACACATGCATCAAGTAGAT
TGTTGCAAGAGCTGCTCTTCCTTTGTGTCATGGATGAGCGAGGCTTATGA
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