mRNA_Ecto-sp9_F_contig10210.239.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10210.239.1 vs.
Match: STI1 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD4_ECTSI) HSP 1 Score: 249 bits (635), Expect = 1.160e-81 Identity = 130/133 (97.74%), Postives = 132/133 (99.25%), Query Frame = 1
Query: 4 FLQDELVERLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFAEDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEELQGDPETAELLKKLEAAMGGMQPQA 402
F +DELVERLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFA+DLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEELQGDPETAELLKKLEAAMGGMQPQA
Sbjct: 116 FEKDELVERLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFADDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEELQGDPETAELLKKLEAAMGGMQPQA 248
BLAST of mRNA_Ecto-sp9_F_contig10210.239.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTT4_9STRA) HSP 1 Score: 124 bits (311), Expect = 5.740e-33 Identity = 68/130 (52.31%), Postives = 91/130 (70.00%), Query Frame = 1
Query: 4 FLQDELVERLIEARSLGRADPSIIDDFNKENLENRM--DPERAAGFAEDL--LNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEELQGDPETAELLKKLEAAM 381
F ++ELV L EAR GRADPSI+D FNK+ ENR+ DP+ A+ L+ E+LKD +A DGTLPGG+TPE ++ +PE+M ++Q PK+QE+MKKVMA+GP AM + GDPE ++ KL AAM
Sbjct: 83 FEKEELVRLLKEAREEGRADPSIVDQFNKQIFENRIQDDPDAASEKIPSPKDLDPEQLKDWSAGDGTLPGGLTPEAAQVLMRDPEIMAMLQMPKMQEVMKKVMAEGPSAMTSMMGDPEAMSMIMKLTAAM 212
BLAST of mRNA_Ecto-sp9_F_contig10210.239.1 vs.
Match: STI1 (domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E0J9_EMIHU) HSP 1 Score: 121 bits (303), Expect = 5.410e-32 Identity = 61/125 (48.80%), Postives = 87/125 (69.60%), Query Frame = 1
Query: 10 QDELVERLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFAEDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEELQGDPETAELLKKLEAAMG 384
+DEL L +ARS G ADP I+D FNK NLEN +P+ A ++ + + + A+DG LPGGM+PE L K+ +PELM +++NPK+Q++MKKVM+ GPEA E+ DP+ AE+L+K +AA G
Sbjct: 80 KDELARMLADARSQGLADPDIVDSFNKANLENAYNPQPA-------VDPDAVAEAVASDGGLPGGMSPETLMKLTQDPELMAMLRNPKMQDVMKKVMSSGPEAAAEMMADPDVAEMLEKFKAATG 197
BLAST of mRNA_Ecto-sp9_F_contig10210.239.1 vs.
Match: Hypothetical (protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DB05_CYCTE) HSP 1 Score: 103 bits (256), Expect = 1.340e-25 Identity = 56/132 (42.42%), Postives = 82/132 (62.12%), Query Frame = 1
Query: 4 FLQDELVERLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFAEDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEE-LQGDPETAELLKKLEAAMGGMQP 396
F ++ LV+RL EAR G+A+P I+D FN+ LE ++A L++E + + A+DG LPGGM+P+ L ++ NPE+M LMQNPKLQE MK +M G E ++ + DPE E+ +KL + QP
Sbjct: 11 FDKESLVQRLKEARETGKANPDILDKFNRSKLEENFSEKKAE------LSDEAIDQVVASDGKLPGGMSPDTLKALIGNPEIMALMQNPKLQEAMKLMMTGGEEELQRAMSNDPELKEIAQKLSEIIMSTQP 136
BLAST of mRNA_Ecto-sp9_F_contig10210.239.1 vs.
Match: Hypothetical (protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0INP6_9EUKA) HSP 1 Score: 102 bits (255), Expect = 1.560e-24 Identity = 52/128 (40.62%), Postives = 81/128 (63.28%), Query Frame = 1
Query: 4 FLQDELVERLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFAEDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEELQGDPETAELLKKLEAAMGG 387
F ++E RL AR+ GRADP++ID+FN++ +E + A + ++ A+DG LPGGM+PEML ++ PEL+ ++ NPKLQE+MK VM GP+ +E DPE E+L+K+++ + G
Sbjct: 96 FEKEEFARRLASARASGRADPTLIDEFNRQAVERAWTADGAGSSMPPDF--QAATEVVASDGGLPGGMSPEMLQSLMQKPELLAMLSNPKLQEVMKTVMEGGPDGAKEFMDDPEVREMLEKVQSMIRG 221
BLAST of mRNA_Ecto-sp9_F_contig10210.239.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WKN4_9SPIT) HSP 1 Score: 101 bits (251), Expect = 7.190e-24 Identity = 55/130 (42.31%), Postives = 86/130 (66.15%), Query Frame = 1
Query: 4 FLQDELVERLIEARSLGRADPSIIDDFNKENLENRMDPERA--------AGFAEDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAME-ELQGDPETAELLKK 366
F + EL RL AR GRADP+I+D FN+ ++E+ D A A E+ ++D+TA+DG+LPGGM PE L + ++PE+M +++NPK+QE++++VMA+GPEA++ + + D E E+LKK
Sbjct: 97 FEKAELASRLARARIAGRADPNILDSFNRASMESAWDASGAQDDIAASPAARGENADASVAVEDVTASDGSLPGGMQPEQLQALANDPEVMAMLRNPKMQEVLREVMANGPEALQTKFKDDAEVREMLKK 226
BLAST of mRNA_Ecto-sp9_F_contig10210.239.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C8G9_THAPS) HSP 1 Score: 99.4 bits (246), Expect = 2.990e-23 Identity = 56/130 (43.08%), Postives = 84/130 (64.62%), Query Frame = 1
Query: 4 FLQDELVERLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFAEDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEE-LQGDPETAELLKKLEAAMGGM 390
F ++ L RL EAR G+ADPS+ID+FN+ NLE + E A +++L + DGTLPGG+ P+ML M+S+PEL+ ++++PK+QE+MK VM G +A+E+ + D E E + KL + MG M
Sbjct: 91 FDREALEIRLNEARCSGKADPSLIDEFNRRNLEANVKGEDALEVTDNML-----ESAVGGDGTLPGGLPPDMLKSMMSDPELVNMLRSPKMQEVMKLVMEGGQDALEDAMTNDKEAYECVTKLNSIMGNM 215
BLAST of mRNA_Ecto-sp9_F_contig10210.239.1 vs.
Match: Hypothetical (protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEQ7_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 5.780e-23 Identity = 52/125 (41.60%), Postives = 80/125 (64.00%), Query Frame = 1
Query: 10 QDELVERLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFAEDLLNEEKLKDLTAA-DGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEELQGDPETAELLKKLEAAM 381
+ +L+ RL E RS G ADP+I+ FN EN+ DP LLN++++ AA DG LPGG++PE++ + S+PE+M +++NPK+QE+MK VM GP+ ++ DP+ LL++L AM
Sbjct: 23 KSQLLIRLNETRSKGIADPNILSKFNDENISEGFDPS--------LLNDKEIVSQVAAKDGNLPGGLSPELVKALTSDPEIMNMLRNPKMQEVMKAVMTQGPDGIKRYLSDPDAMILLQRLSKAM 139
BLAST of mRNA_Ecto-sp9_F_contig10210.239.1 vs.
Match: Uncharacterized (protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KT68_FISSO) HSP 1 Score: 97.4 bits (241), Expect = 1.590e-22 Identity = 54/127 (42.52%), Postives = 82/127 (64.57%), Query Frame = 1
Query: 4 FLQDELVERLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFAEDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEE-LQGDPETAELLKKLEAAM 381
F ++ LVERL AR+ G ADPSI++ FN++ LE DP + D ++ A DGT+PGG+TP+M K+++NPELM ++Q+ K+QE M +M G + +E+ L+ DPE E +KKL++ M
Sbjct: 90 FDKESLVERLQGARAKGLADPSILEKFNRQKLEADFDPSKKVEIQPD-----DIEAAVANDGTIPGGLTPDMFQKLIANPELMAMLQSTKMQEAMTLMMTGGRDELEKKLKEDPELQETVKKLDSIM 211
BLAST of mRNA_Ecto-sp9_F_contig10210.239.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A2U0_TRICV) HSP 1 Score: 97.8 bits (242), Expect = 1.710e-22 Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = 1
Query: 4 FLQDELVERLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFAEDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEELQG-DPETAELLKKLEAAM 381
F ++ L RL+EARS GRADPSI+D FN++ G ++++ L++ DGTLPGGM P+ML K++SNPELM L+Q+PK+QE MK +M +G EA+E+ D E E++ KL M
Sbjct: 115 FDRESLEGRLLEARSTGRADPSIVDAFNQKG-----------GEGPPQIDDDVLQNAVGGDGTLPGGMPPDMLKKLMSNPELMGLLQSPKMQEGMKLMMTEGQEALEKAMAEDRELYEVIMKLNKVM 230 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10210.239.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10210.239.1 >prot_Ecto-sp9_F_contig10210.239.1 ID=prot_Ecto-sp9_F_contig10210.239.1|Name=mRNA_Ecto-sp9_F_contig10210.239.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=135bp FFLQDELVERLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFAEDLLback to top mRNA from alignment at Ecto-sp9_F_contig10210:60..1566+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10210.239.1 ID=mRNA_Ecto-sp9_F_contig10210.239.1|Name=mRNA_Ecto-sp9_F_contig10210.239.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1507bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10210:60..1566+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10210:60..1566+ >mRNA_Ecto-sp9_F_contig10210.239.1 ID=mRNA_Ecto-sp9_F_contig10210.239.1|Name=mRNA_Ecto-sp9_F_contig10210.239.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=810bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10210:60..1566+ (Ectocarpus species9 EcSCA_722f female)back to top |