mRNA_Ecto-sp9_F_contig10205.233.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10205.233.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN5_ECTSI) HSP 1 Score: 467 bits (1202), Expect = 6.640e-163 Identity = 245/256 (95.70%), Postives = 251/256 (98.05%), Query Frame = 1
Query: 1 VVQIFVPAGFAVKWLGCSETTIFVVNFLAMVPLASILGDFTEEVSAHTNQTLGGLIQATLGNAVEIVVSIQALYANQIRVVQASLLGSVFSNMLLVLGCCFFFGGLKHKEQRFNSTSAIANMSLLLLSSLALVLPTPLSHAAEMGDLLTVSRFSGVFLLIMYVQLLIFQFKTHAYLFASTDEDGTNLKLGTSLVGLVVITGLVAWLSEFLVDAIDGFTEEAHLSKSFVGLILLPIIGNAVEHITAITVAMKVKWNL 768
V+ IFVPAGFAVKWLGCSETTIFVVNFLAMVPLASILGDFTEEVSAHTNQTLGGLIQATLGNAVEIVVSIQALYANQIRVVQASLLGSVFSNMLLVLGCCFFFGGLKHKEQRFNSTSAIANMSLLLLSSLALVLPTPLSHAAEMGDLLTVSRFSGVFLLIMYVQLL+FQFKTHAYLFA+TD+DGTNLKLGTSLVGL V+TGLVAWLSEFLVDAIDGFTEEAHLSKSFVGLILLPIIGNAVEHITA+TVAMK K L
Sbjct: 113 VMMIFVPAGFAVKWLGCSETTIFVVNFLAMVPLASILGDFTEEVSAHTNQTLGGLIQATLGNAVEIVVSIQALYANQIRVVQASLLGSVFSNMLLVLGCCFFFGGLKHKEQRFNSTSAIANMSLLLLSSLALVLPTPLSHAAEMGDLLTVSRFSGVFLLIMYVQLLVFQFKTHAYLFANTDDDGTNLKLGTSLVGLAVVTGLVAWLSEFLVDAIDGFTEEAHLSKSFVGLILLPIIGNAVEHITAVTVAMKNKMEL 368
BLAST of mRNA_Ecto-sp9_F_contig10205.233.1 vs.
Match: Sodium/calcium (exchanger protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBG0_9STRA) HSP 1 Score: 342 bits (876), Expect = 7.960e-115 Identity = 174/253 (68.77%), Postives = 215/253 (84.98%), Query Frame = 1
Query: 10 IFVPAGFAVKWLGCSETTIFVVNFLAMVPLASILGDFTEEVSAHTNQTLGGLIQATLGNAVEIVVSIQALYANQIRVVQASLLGSVFSNMLLVLGCCFFFGGLKHKEQRFNSTSAIANMSLLLLSSLALVLPTPLSHAAEMGDLLTVSRFSGVFLLIMYVQLLIFQFKTHAYLFASTDEDGTNLKLGTSLVGLVVITGLVAWLSEFLVDAIDGFTEEAHLSKSFVGLILLPIIGNAVEHITAITVAMKVKWNL 768
+ VP A +LG +T +FV+NFLAM+PLAS+LG+FTEEV+ HTNQT+GGLI AT GNAVE+VV++QAL+A QIRVVQASL+GSVFSNMLLVLGCCFFFGGL++KEQRFNSTSA+ANMSLLLLSSLALVLPTPL+ + E G++L +SRF+G+ LL MYVQL+ FQ KTH++L+ DE + L + + +GL+ +T VA+LSE LVD+IDGFTE+AHLSK+FVGLILLPIIGNAVEH+TA+TVAMK K L
Sbjct: 3 VLVPLAVASHFLGWGDTAVFVLNFLAMMPLASLLGEFTEEVAMHTNQTIGGLINATFGNAVEVVVALQALHAGQIRVVQASLMGSVFSNMLLVLGCCFFFGGLRYKEQRFNSTSAVANMSLLLLSSLALVLPTPLAQSHEDGNVLLISRFAGICLLFMYVQLMFFQLKTHSHLYGDEDEVRSELSMPGACIGLLTVTLAVAYLSELLVDSIDGFTEQAHLSKTFVGLILLPIIGNAVEHVTAVTVAMKDKMEL 255
BLAST of mRNA_Ecto-sp9_F_contig10205.233.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W0D3_9STRA) HSP 1 Score: 306 bits (784), Expect = 7.420e-100 Identity = 156/255 (61.18%), Postives = 205/255 (80.39%), Query Frame = 1
Query: 10 IFVPAGFAVKWLGCSETTIFVVNFLAMVPLASILGDFTEEVSAHTNQTLGGLIQATLGNAVEIVVSIQALYANQIRVVQASLLGSVFSNMLLVLGCCFFFGGLKHKEQRFNSTSAIANMSLLLLSSLALVLPTPLSHAAEMGD--LLTVSRFSGVFLLIMYVQLLIFQFKTHAYLFASTDEDGTNLKLGTSLVGLVVITGLVAWLSEFLVDAIDGFTEEAHLSKSFVGLILLPIIGNAVEHITAITVAMKVKWNL 768
+F+P F + +F +NFLAM+PLAS+LGDFTEE++AHTNQ +GGLI AT GNAVE+VV+IQAL AN+IRVVQAS++GS+FSN+LLVLG CFFFGGLKHKEQ FNST+A AN+SLL L +ALVLPTP + ++ + +L +SRF+ +FL++MY QLLIFQ KTHA+LFA DE+ +L ++ GLV++TG++A +S+FLVD+IDGF E +SK+F+GLI+LPI+GNAVEHITAI+VAMK K +L
Sbjct: 141 VFIPFAFLSYYREWGPDWVFWLNFLAMIPLASMLGDFTEELAAHTNQVIGGLINATFGNAVEVVVAIQALLANEIRVVQASMIGSIFSNLLLVLGGCFFFGGLKHKEQSFNSTAATANISLLALGCMALVLPTPFAEYYDVEEERVLHISRFAALFLMLMYAQLLIFQIKTHAFLFADEDEEMASLPFWVAMAGLVIVTGVIAIMSDFLVDSIDGFCESTGVSKTFIGLIILPIVGNAVEHITAISVAMKDKMDL 395
BLAST of mRNA_Ecto-sp9_F_contig10205.233.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZP93_TRICV) HSP 1 Score: 302 bits (774), Expect = 2.270e-99 Identity = 157/254 (61.81%), Postives = 204/254 (80.31%), Query Frame = 1
Query: 13 FVPAGFAVKWLGCSETTIFVVNFLAMVPLASILGDFTEEVSAHTNQTLGGLIQATLGNAVEIVVSIQALYANQIRVVQASLLGSVFSNMLLVLGCCFFFGGLKHKEQRFNSTSAIANMSLLLLSSLALVLPTPLSHAAEMGD--LLTVSRFSGVFLLIMYVQLLIFQFKTHAYLFASTDEDGTNLKLGTSLVGLVVITGLVAWLSEFLVDAIDGFTEEAHLSKSFVGLILLPIIGNAVEHITAITVAMKVKWNL 768
F+P G+A G S T++F +NFLAM+PLA+ILGDFTEEV+AHTNQ +GGLI AT GNAVE+VV++QAL+AN+IRVVQAS++GS+FSN+LLVLG CFFFGGLK+KEQ FNST+ ANMSLL LSS+AL LPTP + E+ D +L +SR + VFL+ MY+QLL+FQ THA LF D+ T + +L GLVV+T ++A LS++LV +IDGF E+ +S++FVGLI+LPI+GNAVEH+TAI+VAMK K +L
Sbjct: 2 FMPLGWASHRFGWSPTSVFCLNFLAMIPLAAILGDFTEEVAAHTNQVVGGLINATFGNAVEVVVAVQALHANEIRVVQASMIGSIFSNLLLVLGGCFFFGGLKYKEQSFNSTAVTANMSLLALSSVALALPTPFAEYYEVHDDNVLVISRIAAVFLIFMYLQLLVFQLHTHADLFDDDDDTPTEMSSTAALTGLVVVTLVIAQLSDYLVGSIDGFCTESGVSRTFVGLIVLPIVGNAVEHVTAISVAMKDKMDL 255
BLAST of mRNA_Ecto-sp9_F_contig10205.233.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7W0_9STRA) HSP 1 Score: 295 bits (755), Expect = 5.900e-96 Identity = 158/256 (61.72%), Postives = 198/256 (77.34%), Query Frame = 1
Query: 10 IFVPAGFAVKWLGCSETTIFVVNFLAMVPLASILGDFTEEVSAHTNQTLGGLIQATLGNAVEIVVSIQALYANQIRVVQASLLGSVFSNMLLVLGCCFFFGGLKHKEQRFNSTSAIANMSLLLLSSLALVLPTPLSHAA--EMGDLLTVSRFSGVFLLIMYVQLLIFQFKTHAYLFASTDE-DGTNLKLGTSLVGLVVITGLVAWLSEFLVDAIDGFTEEAHLSKSFVGLILLPIIGNAVEHITAITVAMKVKWNL 768
IF+P FA +L T +F++NFLAM+PLAS+LGDFTEE + H QTLGGL+ AT GNAVE+VVSIQAL + QIRVVQ+SLLGSV SN+LLVLGCCFFFGG++ EQ FN T+A AN SLLLLSSLAL+LPTP+ E ++L VSR +GVF+L MY+QLL FQ +TH ++F +G + L +LVGL ++T V+ LS++LVD+IDGFTEEA LSKSFVG+ILLPIIGN VEH+TA+++AMK K L
Sbjct: 39 IFLPLAFASVYLDWGPTLVFILNFLAMIPLASLLGDFTEEAATHVGQTLGGLLNATFGNAVEVVVSIQALRSGQIRVVQSSLLGSVLSNLLLVLGCCFFFGGIRRDEQTFNVTAAKANTSLLLLSSLALILPTPMGSTGYVEEENVLFVSRITGVFMLFMYLQLLFFQLRTHKHMFEDEXXXEGGGMSLSGALVGLALMTLAVSVLSDYLVDSIDGFTEEADLSKSFVGIILLPIIGNVVEHLTAVSMAMKDKMEL 294
BLAST of mRNA_Ecto-sp9_F_contig10205.233.1 vs.
Match: Hypothetical (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TFQ4_PHATR) HSP 1 Score: 291 bits (744), Expect = 9.650e-95 Identity = 152/254 (59.84%), Postives = 196/254 (77.17%), Query Frame = 1
Query: 19 PAGFAVKWLGCSETTIFVVNFLAMVPLASILGDFTEEVSAHTNQTLGGLIQATLGNAVEIVVSIQALYANQIRVVQASLLGSVFSNMLLVLGCCFFFGGLKHKEQRFNSTSAIANMSLLLLSSLALVLPTPLSHAAEMGD--LLTVSRFSGVFLLIMYVQLLIFQFKTHAYLFASTDEDG--TNLKLGTSLVGLVVITGLVAWLSEFLVDAIDGFTEEAHLSKSFVGLILLPIIGNAVEHITAITVAMKVKWNL 768
P G+ + T IF +NF M+PLASILGDFTEEV+ HTNQT+GGLI AT GNAVE+VV+IQAL AN+IRVVQAS++GS+FSN+LLVLGCCFFFGGL H++QRFNS +A ANM LL LSS+AL+LPTP + E+ D +LTVSR + FL+ MY+QLL FQ KTHA LFA T +D + S+VGL+ T ++ S++LV++IDGF ++ +S++FVG+ILLPI+GNAVEH+TA+TVAMK K +L
Sbjct: 9 PLGWYSHYASWGSTWIFWLNFFTMIPLASILGDFTEEVALHTNQTIGGLINATFGNAVEVVVAIQALLANEIRVVQASMIGSIFSNLLLVLGCCFFFGGLGHQQQRFNSVAATANMGLLALSSIALILPTPFAAYYELHDAHVLTVSRIAACFLMCMYLQLLFFQLKTHANLFAGTQDDSELAVMPFWVSIVGLLFTTLVITIFSDYLVESIDGFVTDSGISRTFVGIILLPIVGNAVEHVTAVTVAMKDKMDL 262
BLAST of mRNA_Ecto-sp9_F_contig10205.233.1 vs.
Match: Ca2+:H+ (antiporter n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KS18_FISSO) HSP 1 Score: 288 bits (736), Expect = 5.540e-92 Identity = 150/254 (59.06%), Postives = 194/254 (76.38%), Query Frame = 1
Query: 19 PAGFAVKWLGCSETTIFVVNFLAMVPLASILGDFTEEVSAHTNQTLGGLIQATLGNAVEIVVSIQALYANQIRVVQASLLGSVFSNMLLVLGCCFFFGGLKHKEQRFNSTSAIANMSLLLLSSLALVLPTPLSHAAEMGD--LLTVSRFSGVFLLIMYVQLLIFQFKTHAYLFASTDEDG--TNLKLGTSLVGLVVITGLVAWLSEFLVDAIDGFTEEAHLSKSFVGLILLPIIGNAVEHITAITVAMKVKWNL 768
P + T +F +NF+ ++P ASILGDFTEE++ HTN+T+GGLI A+ GNAVE+VV+I AL A +IRVVQ SLLGS+FSN+LLVLGCCFFFGGLKHKEQ+FN+TSA ANM LL LSS+AL LPTP + + D +L VSR + VFLL MY QLL+FQ THA +F + +D T + + +LVGL+ T LVA+ S+FLV++IDGFTE + +S++FVG+ILLPI+GNAVEH+TA+TVAMK K +L
Sbjct: 127 PLALVSVYFHWGATWVFWLNFMTLIPFASILGDFTEELALHTNETIGGLINASFGNAVEVVVAINALLAGEIRVVQGSLLGSIFSNLLLVLGCCFFFGGLKHKEQKFNATSATANMGLLALSSIALALPTPFAQYYNLHDSEVLLVSRLAAVFLLFMYAQLLVFQLHTHADIFENDGDDAPFTRITMPVALVGLLTTTLLVAFFSDFLVESIDGFTEASGISRTFVGIILLPIVGNAVEHVTAVTVAMKDKMDL 380
BLAST of mRNA_Ecto-sp9_F_contig10205.233.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W4S0_9STRA) HSP 1 Score: 280 bits (717), Expect = 1.140e-90 Identity = 140/258 (54.26%), Postives = 196/258 (75.97%), Query Frame = 1
Query: 1 VVQIFVPAGFAVKWLGCSETTIFVVNFLAMVPLASILGDFTEEVSAHTNQTLGGLIQATLGNAVEIVVSIQALYANQIRVVQASLLGSVFSNMLLVLGCCFFFGGLKHKEQRFNSTSAIANMSLLLLSSLALVLPTPLS--HAAEMGDLLTVSRFSGVFLLIMYVQLLIFQFKTHAYLFASTDEDGTNLKLGTSLVGLVVITGLVAWLSEFLVDAIDGFTEEAHLSKSFVGLILLPIIGNAVEHITAITVAMKVKWNL 768
++ +F P + G ++F +NFL MVPLA++LGDFTEE++AHTNQ +GGL+ AT GN VE++++ QAL A +IRVVQAS++GS+FSN+LLVLGCCFFFGGLK+KEQRFNS +A+ANMSLL L S+ALVLPTP + + + G +LT+SR + + L+IMYVQLLIFQ TH ++F +E+ + +++GL+V T +A S LV +IDG+ + +SK+FVG+I+LPI+GNAVEH+TA++VAMK K +L
Sbjct: 86 ILFLFSPFALYSGYAGWPAASVFWLNFLTMVPLAALLGDFTEEIAAHTNQVIGGLVNATFGNMVEVIIAFQALLAGEIRVVQASMIGSIFSNLLLVLGCCFFFGGLKYKEQRFNSVAAVANMSLLALCSVALVLPTPFAEYYDVDHGIVLTISRIAAIILIIMYVQLLIFQLYTHTHIFEDEEEEEHAIPFYVAIIGLIVTTFSIAIFSNLLVSSIDGYCNTSGISKTFVGIIILPIVGNAVEHMTAVSVAMKNKMDL 343
BLAST of mRNA_Ecto-sp9_F_contig10205.233.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KYE4_9STRA) HSP 1 Score: 283 bits (725), Expect = 8.080e-90 Identity = 150/245 (61.22%), Postives = 193/245 (78.78%), Query Frame = 1
Query: 52 SETTIFVVNFLAMVPLASILGDFTEEVSAHTNQTLGGLIQATLGNAVEIVVSIQALYANQIRVVQASLLGSVFSNMLLVLGCCFFFGGLKHKEQRFNSTSAIANMSLLLLSSLALVLPTPLSHAAEMGD--LLTVSRFSGVFLLIMYVQLLIFQFKTHAYLF-ASTDEDG---TNLKLGTSLVGLVVITGLVAWLSEFLVDAIDGFTEEAHLSKSFVGLILLPIIGNAVEHITAITVAMKVKWNL 768
S+T F +NF+ M+PLASILGDFTEEV+ HTN+T+GGLI AT GNAVE+VV+IQAL AN+IRVVQ+S+LGS+FSN+LLVLG CFFFGGLK+ Q FN+T+A ANM LL LS++ALVLPTP +H +M D +L +SRFS +FL+ MY QLL+FQ THA F A EDG N+ G ++GL+V T LV S++LV++IDGFT + +S++FVG++LLPI+GNAVEH+TAITVA K K +L
Sbjct: 166 SDTAKFWLNFIVMIPLASILGDFTEEVALHTNETIGGLINATFGNAVEVVVAIQALLANEIRVVQSSMLGSIFSNLLLVLGGCFFFGGLKYPNQSFNATAATANMGLLALSAIALVLPTPFAHYYDMHDDRVLLISRFSAIFLMFMYAQLLVFQLHTHANAFTAEGGEDGKELANMSFGMGILGLLVCTLLVTIFSDYLVESIDGFTTASGISRTFVGIVLLPIVGNAVEHVTAITVARKDKMDL 410
BLAST of mRNA_Ecto-sp9_F_contig10205.233.1 vs.
Match: Hypothetical (protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BZT3_9STRA) HSP 1 Score: 280 bits (717), Expect = 9.680e-90 Identity = 144/255 (56.47%), Postives = 197/255 (77.25%), Query Frame = 1
Query: 10 IFVPAGFAVKWLGCSETTIFVVNFLAMVPLASILGDFTEEVSAHTNQTLGGLIQATLGNAVEIVVSIQALYANQIRVVQASLLGSVFSNMLLVLGCCFFFGGLKHKEQRFNSTSAIANMSLLLLSSLALVLPTPLSHAAEMG--DLLTVSRFSGVFLLIMYVQLLIFQFKTHAYLFASTDEDGTNLKLGTSLVGLVVITGLVAWLSEFLVDAIDGFTEEAHLSKSFVGLILLPIIGNAVEHITAITVAMKVKWNL 768
+ +P +A L S++ IF +NF AM+PLAS+LG+FTEE++ HTNQT+GGLI A+ GNAVEIV+SIQAL AN+IRV+QASL+GS+FSN+LLV GCCFFFGGLK+ +Q FNS + AN SLL+LSSLA +LPTP + + ++L+ SR + +FLL+MY+ LL+FQ KTHA+L +++ N+ +++GLV +T LV+ SE+LV +IDGF E + +SK+FVGLI+LPI+GN VEHITA+TVA K K +L
Sbjct: 77 LLMPLAYASVKLQWSDSLIFWLNFGAMLPLASLLGEFTEELALHTNQTIGGLINASFGNAVEIVISIQALLANEIRVIQASLIGSIFSNLLLVQGCCFFFGGLKYPQQSFNSVTLSANTSLLMLSSLAFILPTPYAAYTDTTNEEVLSTSRITSIFLLLMYILLLVFQLKTHAFLLEDDNDEKPNISFWAAIIGLVSVTVLVSIFSEYLVSSIDGFVEGSDISKTFVGLIILPIVGNGVEHITAVTVARKDKMDL 331 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10205.233.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10205.233.1 >prot_Ecto-sp9_F_contig10205.233.1 ID=prot_Ecto-sp9_F_contig10205.233.1|Name=mRNA_Ecto-sp9_F_contig10205.233.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=256bp VVQIFVPAGFAVKWLGCSETTIFVVNFLAMVPLASILGDFTEEVSAHTNQback to top mRNA from alignment at Ecto-sp9_F_contig10205:573..4659- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10205.233.1 ID=mRNA_Ecto-sp9_F_contig10205.233.1|Name=mRNA_Ecto-sp9_F_contig10205.233.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4087bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10205:573..4659- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10205:573..4659- >mRNA_Ecto-sp9_F_contig10205.233.1 ID=mRNA_Ecto-sp9_F_contig10205.233.1|Name=mRNA_Ecto-sp9_F_contig10205.233.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1536bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10205:573..4659- (Ectocarpus species9 EcSCA_722f female)back to top |