mRNA_Ecto-sp9_F_contig10197.226.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10197.226.1
Unique NamemRNA_Ecto-sp9_F_contig10197.226.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10197.226.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ07_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 5.060e-28
Identity = 56/62 (90.32%), Postives = 58/62 (93.55%), Query Frame = 3 
Query:   18 NVPSSCCPFQNPGPGRLSPLSRSSMDLPFAFRQRVYRPSNLSRRRQNNIVETSNRNANGIKH 203
            +VPSS CPFQNP PGRLSPL+RSSMDLPFAFRQRVYRPSNL RRRQNNIVETSNRNA GIKH
Sbjct:  308 SVPSSYCPFQNPAPGRLSPLARSSMDLPFAFRQRVYRPSNLPRRRQNNIVETSNRNAIGIKH 369
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10197.226.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized5.060e-2890.32protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10197contigEcto-sp9_F_contig10197:593..897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog2880.D8LJ07
EggNOG OGs2EMSJ@1,2SRCT@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size305
Cds size216
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928214.7842503-UTR-Ecto-sp9_F_contig10197:592..6811622928214.7842503-UTR-Ecto-sp9_F_contig10197:592..681Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10197 593..681 +
1692277798.1803014-UTR-Ecto-sp9_F_contig10197:592..6811692277798.1803014-UTR-Ecto-sp9_F_contig10197:592..681Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10197 593..681 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928214.8015692-CDS-Ecto-sp9_F_contig10197:681..8971622928214.8015692-CDS-Ecto-sp9_F_contig10197:681..897Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10197 682..897 +
1692277798.1901307-CDS-Ecto-sp9_F_contig10197:681..8971692277798.1901307-CDS-Ecto-sp9_F_contig10197:681..897Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10197 682..897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10197.226.1prot_Ecto-sp9_F_contig10197.226.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10197 682..897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10197.226.1

>prot_Ecto-sp9_F_contig10197.226.1 ID=prot_Ecto-sp9_F_contig10197.226.1|Name=mRNA_Ecto-sp9_F_contig10197.226.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=72bp
MDLPFAFRQRVYRPSNLSRRRQNNIVETSNRNANGIKHQRFTVKFWGVTP
SSEKGKTVEVQTAVVFFLRKA*
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mRNA from alignment at Ecto-sp9_F_contig10197:593..897+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10197.226.1 ID=mRNA_Ecto-sp9_F_contig10197.226.1|Name=mRNA_Ecto-sp9_F_contig10197.226.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=305bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10197:593..897+ (Ectocarpus species9 EcSCA_722f female)
CCCTGCTCCGTCTGTAAAATGTACCATCGAGTTGTTGTCCCTTTCAAAAC
CCCGGTCCTGGCAGACTCTCGCCCCTCTCACGCTCCAGTATGGACTTGCC
CTTCGCCTTTCGTCAGCGTGTGTATCGACCAAGCAACCTCTCTCGTCGAC
GCCAAAACAACATTGTCGAGACATCCAACAGGAACGCCAATGGCATAAAA
CATCAGCGCTTCACCGTAAAATTCTGGGGTGTGACCCCTTCATCTGAGAA
AGGCAAGACTGTGGAGGTACAAACGGCGGTGGTGTTTTTTCTACGGAAGG
CCTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10197:593..897+

>mRNA_Ecto-sp9_F_contig10197.226.1 ID=mRNA_Ecto-sp9_F_contig10197.226.1|Name=mRNA_Ecto-sp9_F_contig10197.226.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10197:593..897+ (Ectocarpus species9 EcSCA_722f female)
ATGGACTTGCCCTTCGCCTTTCGTCAGCGTGTGTATCGACCAAGCAACCT
CTCTCGTCGACGCCAAAACAACATTGTCGAGACATCCAACAGGAACGCCA
ATGGCATAAAACATCAGCGCTTCACCGTAAAATTCTGGGGTGTGACCCCT
TCATCTGAGAAAGGCAAGACTGTGGAGGTACAAACGGCGGTGGTGTTTTT
TCTACGGAAGGCCTAGATGGACTTGCCCTTCGCCTTTCGTCAGCGTGTGT
ATCGACCAAGCAACCTCTCTCGTCGACGCCAAAACAACATTGTCGAGACA
TCCAACAGGAACGCCAATGGCATAAAACATCAGCGCTTCACCGTAAAATT
CTGGGGTGTGACCCCTTCATCTGAGAAAGGCAAGACTGTGGAGGTACAAA
CGGCGGTGGTGTTTTTTCTACGGAAGGCCTAG
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