mRNA_Ecto-sp9_F_contig10196.225.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10196.225.1
Unique NamemRNA_Ecto-sp9_F_contig10196.225.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10196.225.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB8_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.150e-21
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:   13 SKEAIQ---YWSTTRQYVRKKGEMVFARFGFLVFVQWKDSKLVKFLSTIHFSPKHFLPKE 183
            +K+ +Q   YW+ TRQYVRKKGEMV ARFGFLVFVQWKDSK+VKFLST+H SPKH LPKE
Sbjct:  569 TKQLVQDRNYWTATRQYVRKKGEMVLARFGFLVFVQWKDSKVVKFLSTVHLSPKHVLPKE 628
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BLAST of mRNA_Ecto-sp9_F_contig10196.225.1 vs.
Match: piggyBac (transposable element-derived protein 4-like isoform X1 n=4 Tax=Silurus meridionalis TaxID=175797 RepID=UPI001EEC279E)

HSP 1 Score: 53.9 bits (128), Expect = 3.870e-6
Identity = 32/85 (37.65%), Postives = 45/85 (52.94%), Query Frame = 1 
Query:   64 KGEMVFARFGFLVFVQWKDSKLVKFLSTIHFSPKHFLPKEYSKHVAGQSKKTDGFQPWCRFHY-KFMGGVDISDQHNGAYQTQHR 315
            +G   + R G L+FV+WKD+++V   ST H   +    +   K  AGQ K  D   P C   Y ++MGGVD+SD   G Y   H+
Sbjct:  524 RGTHRWLREGNLLFVEWKDTRVVYMCSTFHKGTESSTVQRKVKGKAGQWKNLDLPVPECVVEYNRYMGGVDLSDALIGYYTVLHK 608
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10196.225.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.150e-2176.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
piggyBac3.870e-637.65transposable element-derived protein 4-like isofor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10196contigEcto-sp9_F_contig10196:3466..3969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPiggyBac transposable element-derived protein
Ec32 orthologEc-00_004460.1
Exons2
Model size318
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928214.726378-CDS-Ecto-sp9_F_contig10196:3465..36531622928214.726378-CDS-Ecto-sp9_F_contig10196:3465..3653Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10196 3466..3653 +
1692277798.1582253-CDS-Ecto-sp9_F_contig10196:3465..36531692277798.1582253-CDS-Ecto-sp9_F_contig10196:3465..3653Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10196 3466..3653 +
1622928214.7421176-CDS-Ecto-sp9_F_contig10196:3840..39671622928214.7421176-CDS-Ecto-sp9_F_contig10196:3840..3967Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10196 3841..3967 +
1692277798.1715674-CDS-Ecto-sp9_F_contig10196:3840..39671692277798.1715674-CDS-Ecto-sp9_F_contig10196:3840..3967Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10196 3841..3967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10196.225.1prot_Ecto-sp9_F_contig10196.225.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10196 3466..3967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10196.225.1

>prot_Ecto-sp9_F_contig10196.225.1 ID=prot_Ecto-sp9_F_contig10196.225.1|Name=mRNA_Ecto-sp9_F_contig10196.225.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=105bp
THRGSKEAIQYWSTTRQYVRKKGEMVFARFGFLVFVQWKDSKLVKFLSTI
HFSPKHFLPKEYSKHVAGQSKKTDGFQPWCRFHYKFMGGVDISDQHNGAY
QTQHR
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mRNA from alignment at Ecto-sp9_F_contig10196:3466..3969+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10196.225.1 ID=mRNA_Ecto-sp9_F_contig10196.225.1|Name=mRNA_Ecto-sp9_F_contig10196.225.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=504bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10196:3466..3969+ (Ectocarpus species9 EcSCA_722f female)
ACACACCGCGGATCGAAAGAGGCCATCCAGTACTGGTCTACCACGAGACA
GTATGTCAGGAAGAAGGGCGAGATGGTGTTCGCGAGGTTCGGGTTCTTGG
TGTTCGTGCAGTGGAAGGATTCCAAGCTCGTCAAATTTTTGTCCACAATC
CACTTCAGCCCGAAGCACTTTCTACCGAAGGAGTACAGGTGGGCGCGCTG
TTTATGACATGCGTATGGTTCTGATATTCTTGGCACGATATATGTCCAGG
GGTTGGTTATACGGACGGGTGTGTACGTGTCTAGACGCTGCTGAGGTTCA
TACCCCGATCATGCTGACACAGAACTCCATACATTCGGCCCCGTGCGCTC
TCGCTGTATTCGTCCACACCGACAGCAAGCACGTGGCGGGACAGTCGAAG
AAGACCGACGGGTTCCAGCCTTGGTGTAGATTCCACTACAAGTTCATGGG
GGGAGTAGATATCTCGGACCAGCACAACGGTGCGTACCAGACACAACACC
GTGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10196:3466..3969+

>mRNA_Ecto-sp9_F_contig10196.225.1 ID=mRNA_Ecto-sp9_F_contig10196.225.1|Name=mRNA_Ecto-sp9_F_contig10196.225.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10196:3466..3969+ (Ectocarpus species9 EcSCA_722f female)
ACACACCGCGGATCGAAAGAGGCCATCCAGTACTGGTCTACCACGAGACA
GTATGTCAGGAAGAAGGGCGAGATGGTGTTCGCGAGGTTCGGGTTCTTGG
TGTTCGTGCAGTGGAAGGATTCCAAGCTCGTCAAATTTTTGTCCACAATC
CACTTCAGCCCGAAGCACTTTCTACCGAAGGAGTACAGACACACCGCGGA
TCGAAAGAGGCCATCCAGTACTGGTCTACCACGAGACAGTATGTCAGGAA
GAAGGGCGAGATGGTGTTCGCGAGGTTCGGGTTCTTGGTGTTCGTGCAGT
GGAAGGATTCCAAGCTCGTCAAATTTTTGTCCACAATCCACTTCAGCCCG
AAGCACTTTCTACCGAAGGAGTACAGCAAGCACGTGGCGGGACAGTCGAA
GAAGACCGACGGGTTCCAGCCTTGGTGTAGATTCCACTACAAGTTCATGG
GGGGAGTAGATATCTCGGACCAGCACAACGGTGCGTACCAGACACAACAC
CGTCAAGCACGTGGCGGGACAGTCGAAGAAGACCGACGGGTTCCAGCCTT
GGTGTAGATTCCACTACAAGTTCATGGGGGGAGTAGATATCTCGGACCAG
CACAACGGTGCGTACCAGACACAACACCGT
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