mRNA_Ecto-sp9_F_contig1019.219.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Match: Clu (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF64_ECTSI) HSP 1 Score: 126 bits (316), Expect = 7.290e-35 Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 1
Query: 1 NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDFEHKSIK 177
NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLD +HKSIK
Sbjct: 10 NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDLKHKSIK 68
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Match: Clu (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G9_ECTSI) HSP 1 Score: 120 bits (300), Expect = 3.520e-30 Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 1
Query: 1 NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDFEHKSIK 177
NWNELFQSALDLPE+TPDQCYRKWER+TTVNRDFKA AVTYGKTIISEYFL+ EHKSI+
Sbjct: 247 NWNELFQSALDLPEETPDQCYRKWERLTTVNRDFKATAVTYGKTIISEYFLETEHKSIR 305
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z6I8_9MYCE) HSP 1 Score: 67.0 bits (162), Expect = 1.680e-11 Identity = 28/59 (47.46%), Postives = 45/59 (76.27%), Query Frame = 1
Query: 1 NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDFEHKSIK 177
+WN+ FQ L LPED DQ ++K++ ++++++DF AA+TYGK II E F+D ++K+IK
Sbjct: 223 DWNQYFQKLLLLPEDDLDQKFKKYKTLSSLSKDFLHAAITYGKIIIEEAFIDTKYKTIK 281
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Match: hypothetical (protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644D258) HSP 1 Score: 62.0 bits (149), Expect = 9.640e-10 Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 1
Query: 4 WNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDFEHKSI 174
WNE FQ L LPED D+ Y K++ ++++++DF AA+TYGK II E F+D K+I
Sbjct: 332 WNEKFQRLLLLPEDDLDKKYVKYKHLSSLSKDFLHAAITYGKIIIEEAFIDTRFKTI 388
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Match: CLU (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN4_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 2.930e-9 Identity = 32/59 (54.24%), Postives = 38/59 (64.41%), Query Frame = 1
Query: 1 NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDFEHKSIK 177
NWN LFQ A LPE T + K + TV RDF AAAV YG+TIISE+FL +SI+
Sbjct: 31 NWNALFQEAQALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIR 89
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PL66_CAVFA) HSP 1 Score: 59.3 bits (142), Expect = 8.710e-9 Identity = 24/59 (40.68%), Postives = 43/59 (72.88%), Query Frame = 1
Query: 1 NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDFEHKSIK 177
+WN+ FQ L LPED ++ + K++ ++++++DF +A+TYGK II E F++ +K+IK
Sbjct: 461 SWNDTFQRLLLLPEDDQEKKFVKYKHLSSLSKDFLHSAITYGKIIIEERFIEERYKTIK 519
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Match: Uncharacterized (protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V2N0_9MYCE) HSP 1 Score: 58.5 bits (140), Expect = 1.630e-8 Identity = 25/58 (43.10%), Postives = 40/58 (68.97%), Query Frame = 1
Query: 4 WNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDFEHKSIK 177
WN +FQ+ L L ED Y+K++ +++++ DF A+TYGK II E F+D ++K+IK
Sbjct: 224 WNHIFQNLLLLGEDDLSSKYKKYKDLSSLSNDFLHTAITYGKIIIEEAFIDEQYKTIK 281
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Match: Uncharacterized (protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54SB7_DICDI) HSP 1 Score: 58.5 bits (140), Expect = 1.630e-8 Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 1 NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDFEHKSIK 177
+WN FQ L LPE+ D+ Y K++ ++ +++DF A+TYGK II E F+D + K+I+
Sbjct: 306 DWNGYFQKLLLLPEEDLDEKYEKYKSLSALSKDFIHTAITYGKIIIEEAFIDNKFKTIR 364
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Match: Clu (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G7_ECTSI) HSP 1 Score: 56.6 bits (135), Expect = 7.610e-8 Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 1
Query: 1 NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDFEHKSIK 177
NWN+ +Q AL LP T K + V DF AVTYG+TIISEYFL KS+K
Sbjct: 99 NWNDRWQEALSLPNKTKMDINYKRRSLDAVYSDFVHTAVTYGRTIISEYFLHEYMKSVK 157
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Match: Clu (domain-containing protein (Fragment) n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HAW3_ACACA) HSP 1 Score: 53.1 bits (126), Expect = 1.300e-6 Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 1
Query: 1 NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDFEHKSIK 177
NWNE FQS L+LP T + +++E + + +DF A YGK II+E FL ++++IK
Sbjct: 654 NWNEEFQSLLELPVVTEKERLKRYELIHNLAQDFSITAKLYGKIIIAEAFLPRKYQTIK 712 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1019.219.1 >prot_Ecto-sp9_F_contig1019.219.1 ID=prot_Ecto-sp9_F_contig1019.219.1|Name=mRNA_Ecto-sp9_F_contig1019.219.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=60bp NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFback to top mRNA from alignment at Ecto-sp9_F_contig1019:67..246- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1019.219.1 ID=mRNA_Ecto-sp9_F_contig1019.219.1|Name=mRNA_Ecto-sp9_F_contig1019.219.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=180bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1019:67..246- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1019:67..246- >mRNA_Ecto-sp9_F_contig1019.219.1 ID=mRNA_Ecto-sp9_F_contig1019.219.1|Name=mRNA_Ecto-sp9_F_contig1019.219.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1019:67..246- (Ectocarpus species9 EcSCA_722f female)back to top |