mRNA_Ecto-sp9_F_contig1019.219.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1019.219.1
Unique NamemRNA_Ecto-sp9_F_contig1019.219.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Match: Clu (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF64_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 7.290e-35
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 1
Query:    1 NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDFEHKSIK 177
            NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLD +HKSIK
Sbjct:   10 NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDLKHKSIK 68          
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Match: Clu (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G9_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 3.520e-30
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 1
Query:    1 NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDFEHKSIK 177
            NWNELFQSALDLPE+TPDQCYRKWER+TTVNRDFKA AVTYGKTIISEYFL+ EHKSI+
Sbjct:  247 NWNELFQSALDLPEETPDQCYRKWERLTTVNRDFKATAVTYGKTIISEYFLETEHKSIR 305          
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z6I8_9MYCE)

HSP 1 Score: 67.0 bits (162), Expect = 1.680e-11
Identity = 28/59 (47.46%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDFEHKSIK 177
            +WN+ FQ  L LPED  DQ ++K++ ++++++DF  AA+TYGK II E F+D ++K+IK
Sbjct:  223 DWNQYFQKLLLLPEDDLDQKFKKYKTLSSLSKDFLHAAITYGKIIIEEAFIDTKYKTIK 281          
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Match: hypothetical (protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644D258)

HSP 1 Score: 62.0 bits (149), Expect = 9.640e-10
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    4 WNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDFEHKSI 174
            WNE FQ  L LPED  D+ Y K++ ++++++DF  AA+TYGK II E F+D   K+I
Sbjct:  332 WNEKFQRLLLLPEDDLDKKYVKYKHLSSLSKDFLHAAITYGKIIIEEAFIDTRFKTI 388          
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Match: CLU (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.930e-9
Identity = 32/59 (54.24%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    1 NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDFEHKSIK 177
            NWN LFQ A  LPE T  +   K   + TV RDF AAAV YG+TIISE+FL    +SI+
Sbjct:   31 NWNALFQEAQALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIR 89          
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PL66_CAVFA)

HSP 1 Score: 59.3 bits (142), Expect = 8.710e-9
Identity = 24/59 (40.68%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDFEHKSIK 177
            +WN+ FQ  L LPED  ++ + K++ ++++++DF  +A+TYGK II E F++  +K+IK
Sbjct:  461 SWNDTFQRLLLLPEDDQEKKFVKYKHLSSLSKDFLHSAITYGKIIIEERFIEERYKTIK 519          
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Match: Uncharacterized (protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V2N0_9MYCE)

HSP 1 Score: 58.5 bits (140), Expect = 1.630e-8
Identity = 25/58 (43.10%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    4 WNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDFEHKSIK 177
            WN +FQ+ L L ED     Y+K++ +++++ DF   A+TYGK II E F+D ++K+IK
Sbjct:  224 WNHIFQNLLLLGEDDLSSKYKKYKDLSSLSNDFLHTAITYGKIIIEEAFIDEQYKTIK 281          
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Match: Uncharacterized (protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54SB7_DICDI)

HSP 1 Score: 58.5 bits (140), Expect = 1.630e-8
Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    1 NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDFEHKSIK 177
            +WN  FQ  L LPE+  D+ Y K++ ++ +++DF   A+TYGK II E F+D + K+I+
Sbjct:  306 DWNGYFQKLLLLPEEDLDEKYEKYKSLSALSKDFIHTAITYGKIIIEEAFIDNKFKTIR 364          
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Match: Clu (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G7_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 7.610e-8
Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 1
Query:    1 NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDFEHKSIK 177
            NWN+ +Q AL LP  T      K   +  V  DF   AVTYG+TIISEYFL    KS+K
Sbjct:   99 NWNDRWQEALSLPNKTKMDINYKRRSLDAVYSDFVHTAVTYGRTIISEYFLHEYMKSVK 157          
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Match: Clu (domain-containing protein (Fragment) n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HAW3_ACACA)

HSP 1 Score: 53.1 bits (126), Expect = 1.300e-6
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    1 NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDFEHKSIK 177
            NWNE FQS L+LP  T  +  +++E +  + +DF   A  YGK II+E FL  ++++IK
Sbjct:  654 NWNEEFQSLLELPVVTEKERLKRYELIHNLAQDFSITAKLYGKIIIAEAFLPRKYQTIK 712          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1019.219.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
Clu7.290e-3596.61domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Clu3.520e-3089.83domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.680e-1147.46protein n=1 Tax=Tieghemostelium lacteum TaxID=3610... [more]
hypothetical9.640e-1049.12protein n=1 Tax=Acytostelium subglobosum LB1 TaxID... [more]
CLU2.930e-954.24domain-containing protein n=1 Tax=Tribonema minus ... [more]
Uncharacterized8.710e-940.68protein n=1 Tax=Cavenderia fasciculata (strain SH3... [more]
Uncharacterized1.630e-843.10protein n=1 Tax=Polysphondylium violaceum TaxID=13... [more]
Uncharacterized1.630e-842.37protein n=1 Tax=Dictyostelium discoideum TaxID=446... [more]
Clu7.610e-849.15domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Clu1.300e-642.37domain-containing protein (Fragment) n=1 Tax=Acant... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1019contigEcto-sp9_F_contig1019:67..246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue8e-27
Seed eggNOG ortholog2880.D8LF64
KEGG koko:K02987
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
EggNOG free text desc.intracellular distribution of mitochondria
EggNOG OGsKOG1839@1,KOG1839@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928214.1102521-CDS-Ecto-sp9_F_contig1019:66..2461622928214.1102521-CDS-Ecto-sp9_F_contig1019:66..246Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1019 67..246 -
1692277797.9408536-CDS-Ecto-sp9_F_contig1019:66..2461692277797.9408536-CDS-Ecto-sp9_F_contig1019:66..246Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1019 67..246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1019.219.1prot_Ecto-sp9_F_contig1019.219.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1019 67..246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1019.219.1

>prot_Ecto-sp9_F_contig1019.219.1 ID=prot_Ecto-sp9_F_contig1019.219.1|Name=mRNA_Ecto-sp9_F_contig1019.219.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=60bp
NWNELFQSALDLPEDTPDQCYRKWERMTTVNRDFKAAAVTYGKTIISEYF
LDFEHKSIK*
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mRNA from alignment at Ecto-sp9_F_contig1019:67..246-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1019.219.1 ID=mRNA_Ecto-sp9_F_contig1019.219.1|Name=mRNA_Ecto-sp9_F_contig1019.219.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=180bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1019:67..246- (Ectocarpus species9 EcSCA_722f female)
AATTGGAACGAGCTCTTCCAATCGGCGCTCGATCTTCCGGAAGATACTCC CGACCAGTGCTACAGGAAGTGGGAGCGCATGACCACGGTTAACCGGGACT TCAAGGCGGCCGCGGTTACCTACGGGAAAACCATCATCTCGGAGTACTTC CTTGACTTCGAGCACAAGAGCATCAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1019:67..246-

>mRNA_Ecto-sp9_F_contig1019.219.1 ID=mRNA_Ecto-sp9_F_contig1019.219.1|Name=mRNA_Ecto-sp9_F_contig1019.219.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1019:67..246- (Ectocarpus species9 EcSCA_722f female)
AATTGGAACGAGCTCTTCCAATCGGCGCTCGATCTTCCGGAAGATACTCC
CGACCAGTGCTACAGGAAGTGGGAGCGCATGACCACGGTTAACCGGGACT
TCAAGGCGGCCGCGGTTACCTACGGGAAAACCATCATCTCGGAGTACTTC
CTTGACTTCGAGCACAAGAGCATCAAGTGAAATTGGAACGAGCTCTTCCA
ATCGGCGCTCGATCTTCCGGAAGATACTCCCGACCAGTGCTACAGGAAGT
GGGAGCGCATGACCACGGTTAACCGGGACTTCAAGGCGGCCGCGGTTACC
TACGGGAAAACCATCATCTCGGAGTACTTCCTTGACTTCGAGCACAAGAG
CATCAAGTGA
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