mRNA_Ecto-sp9_F_contig10188.217.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10188.217.1
Unique NamemRNA_Ecto-sp9_F_contig10188.217.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10188.217.1 vs.
Match: RanBP2-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX1_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 1.220e-65
Identity = 201/271 (74.17%), Postives = 205/271 (75.65%), Query Frame = 1 
Query:  166 MTGRRRRHDTPSPLSQRRGGXXXXXXXPRSGDRGGQQQHXXXXXXXXXXXPRRSPADDGGVSRKRYSSSDSEGEGDGGDKDPARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGTGVARDAATADAA----AAGGPTPATARSQIGSASPPAIVDEDAPTPPGSPAAASATKPSTEGPLAVNGGGGADDKEXXXXXXXXXXXXXXXKTAVEAPAAGKNSFFAQLQASERKKGTVGTMHATGNHG 966
            MTG RRRHDTPSPL +RRGG XXXXX PRSGDRGGQQQH XXXXXXXXXXP RS ADDGGVSR R+S                 XXXXXXXXXXXXXXXXXXXXXXXXXX                            EEGTG+ARDAATADAA    AAGGPTPA ARSQI SASPPAIVDE APTPPGSP AASAT PSTEGPLAVNGGGGADD E  XXXXXXXXXXXX KTAVEAPAAGKNSFFAQLQASERKKGTVGT+HATGNHG
Sbjct:    1 MTGTRRRHDTPSPLFERRGGRXXXXXPPRSGDRGGQQQHQXXXXXXXXXXPPRSAADDGGVSRTRHSXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSYKHRKKGERKSRCGGYDSNSSSDQGGEEGTGIARDAATADAANAAAAAGGPTPAIARSQIESASPPAIVDEHAPTPPGSPPAASATNPSTEGPLAVNGGGGADDTEACXXXXXXXXXXXXHKTAVEAPAAGKNSFFAQLQASERKKGTVGTIHATGNHG 270
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10188.217.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
RanBP2-type1.220e-6574.17domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10188contigEcto-sp9_F_contig10188:1983..3752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-19_001430.1
Exons3
Model size968
Cds size966
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10188.217.1prot_Ecto-sp9_F_contig10188.217.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10188 1983..3752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928213.9781737-CDS-Ecto-sp9_F_contig10188:1982..20331622928213.9781737-CDS-Ecto-sp9_F_contig10188:1982..2033Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10188 1983..2033 +
1692277797.8636718-CDS-Ecto-sp9_F_contig10188:1982..20331692277797.8636718-CDS-Ecto-sp9_F_contig10188:1982..2033Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10188 1983..2033 +
1622928213.9910722-CDS-Ecto-sp9_F_contig10188:2268..25161622928213.9910722-CDS-Ecto-sp9_F_contig10188:2268..2516Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10188 2269..2516 +
1692277797.8720772-CDS-Ecto-sp9_F_contig10188:2268..25161692277797.8720772-CDS-Ecto-sp9_F_contig10188:2268..2516Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10188 2269..2516 +
1622928214.0035777-CDS-Ecto-sp9_F_contig10188:3085..37521622928214.0035777-CDS-Ecto-sp9_F_contig10188:3085..3752Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10188 3086..3752 +
1692277797.8798661-CDS-Ecto-sp9_F_contig10188:3085..37521692277797.8798661-CDS-Ecto-sp9_F_contig10188:3085..3752Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10188 3086..3752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10188.217.1

>prot_Ecto-sp9_F_contig10188.217.1 ID=prot_Ecto-sp9_F_contig10188.217.1|Name=mRNA_Ecto-sp9_F_contig10188.217.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=322bp
QRSRPYLAGRSTVRTQQVFSRYKLRPPPPRPLDPRRVLQSIDTGVTRGGE
PAASSMTGRRRRHDTPSPLSQRRGGRHDTPSPPRSGDRGGQQQHQRKRPR
SRSQSPRRSPADDGGVSRKRYSSSDSEGEGDGGDKDPARRRKKQRKDEKK
ARKREKKKAKRKSSSRSDKHRKKGDKKKRGGGYDSNSSSDQGGEEGTGVA
RDAATADAAAAGGPTPATARSQIGSASPPAIVDEDAPTPPGSPAAASATK
PSTEGPLAVNGGGGADDKEACVDEDAPTPPASPHKTAVEAPAAGKNSFFA
QLQASERKKGTVGTMHATGNHG
back to top

mRNA from alignment at Ecto-sp9_F_contig10188:1983..3752+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10188.217.1 ID=mRNA_Ecto-sp9_F_contig10188.217.1|Name=mRNA_Ecto-sp9_F_contig10188.217.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1770bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10188:1983..3752+ (Ectocarpus species9 EcSCA_722f female)
CAGCGTTCACGCCCATACTTAGCTGGTAGGAGCACAGTCAGGACACAACA
GGTGAGACAACCATGTTGCACTTTTTGAAAATCCAGCATCATGGGCTTCT
TCGTCCCCGCACAGCATCTCGTCTACAGCAGCGTCGCAGGGTAGAGAAAG
TGCGCATTGCCAACTACAGTTGGTTCTTCACCAAGTTCCTCGGGGGTGTT
GTTCAGTACATGCCCCTCCTGTCGATCCACACCGACCCATGCCCCACCCA
TCTTTCACACCACCTTGGCGTATGTATCGTACGTAGGTGTTCAGTAGATA
CAAGCTCCGGCCGCCGCCTCCGCGCCCACTGGACCCACGTCGAGTGCTGC
AGAGCATCGACACCGGGGTAACGCGTGGAGGAGAACCAGCGGCTTCCTCC
ATGACCGGCAGAAGAAGAAGGCACGATACTCCGAGCCCTCTCTCCCAGAG
AAGAGGAGGCAGGCATGACACGCCTAGCCCTCCTCGCTCCGGTGACCGAG
GGGGACAGCAGCAGCACCAGCGCAAACGGCCCAGGTATGCATATTCTCCC
GCTCCACCACGCCCTCTTCTCTCGATCGGGCGAAAGCACGCGGCTGCGGT
ACGATGCATGTATTGTGCTCGCCCAGCTCACGCGTTCGCATCCCGTCTGG
TTTGTTGCATTATCCGCATCTGTTCGCCGGTAGCAAAGGTAGCGAACGGT
CACCAGCATCGACGCCTGTTAGAGTACCGTGTACGACACAAGATAGCACA
CCACCTGGACTGATTTTCAAATCTCGATTTTTATCAACAGCAGAAAGAGC
CGCAGCGCCGAAAACGGCGGCGTTGAAGCCGTCTGGTTGAGAGCTCTCCG
AAAACTTATCGTTTCGTTTATTCATCCTCCTCGTCGTGGAGATTACTCCG
CGTCGTGGAGTAATCGAGCTTTGAAAAACGGTCCAGGGGGTGTGTTATCT
TGTGTCGTATACGGTACGCCAAATCGCATGTTGCAGCCTCCAATGTTAGC
TCGTCGCATGGTTTCACCAGGTGATGCCGACAACATGGCCGCAACCCCAA
GCGGGAATCTGATGGGCTCTTTCGTTGACTCTTCTTGTGATCCCGACTTT
CAGGTCTCGATCTCAATCGCCTCGACGCTCCCCTGCCGATGATGGTGGTG
TCAGTAGAAAAAGGTACAGCAGCAGTGACAGCGAGGGTGAGGGCGACGGT
GGCGACAAAGACCCCGCACGGCGGCGCAAGAAGCAGAGGAAGGACGAGAA
GAAGGCGAGGAAAAGAGAGAAGAAAAAGGCCAAGAGAAAGAGCAGCAGCA
GGAGTGACAAGCACCGCAAGAAGGGGGACAAGAAGAAGAGGGGCGGGGGC
TACGACAGCAACAGCAGCAGCGATCAGGGGGGTGAAGAAGGCACCGGAGT
AGCCAGAGATGCAGCGACCGCAGACGCCGCCGCTGCTGGAGGGCCGACGC
CCGCAACAGCTCGCTCGCAAATAGGATCGGCATCTCCACCAGCGATCGTG
GACGAGGACGCGCCGACCCCGCCGGGCAGCCCCGCCGCCGCCAGCGCAAC
GAAACCAAGCACGGAGGGACCGTTGGCCGTGAACGGAGGCGGAGGGGCGG
ACGATAAGGAGGCGTGTGTGGACGAAGACGCGCCGACCCCGCCGGCCAGC
CCTCACAAGACAGCGGTGGAGGCACCCGCGGCAGGCAAGAACTCGTTCTT
CGCTCAGCTGCAGGCTTCGGAGCGAAAGAAAGGGACGGTAGGGACGATGC
ACGCCACGGGAAATCACGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10188:1983..3752+

>mRNA_Ecto-sp9_F_contig10188.217.1 ID=mRNA_Ecto-sp9_F_contig10188.217.1|Name=mRNA_Ecto-sp9_F_contig10188.217.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1932bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10188:1983..3752+ (Ectocarpus species9 EcSCA_722f female)
CAGCGTTCACGCCCATACTTAGCTGGTAGGAGCACAGTCAGGACACAACA
GCAGCGTTCACGCCCATACTTAGCTGGTAGGAGCACAGTCAGGACACAAC
AGGTGTTCAGTAGATACAAGCTCCGGCCGCCGCCTCCGCGCCCACTGGAC
CCACGTCGAGTGCTGCAGAGCATCGACACCGGGGTAACGCGTGGAGGAGA
ACCAGCGGCTTCCTCCATGACCGGCAGAAGAAGAAGGCACGATACTCCGA
GCCCTCTCTCCCAGAGAAGAGGAGGCAGGCATGACACGCCTAGCCCTCCT
CGCTCCGGTGACCGAGGGGGACAGCAGCAGCACCAGCGCAAACGGCCCAG
GTGTTCAGTAGATACAAGCTCCGGCCGCCGCCTCCGCGCCCACTGGACCC
ACGTCGAGTGCTGCAGAGCATCGACACCGGGGTAACGCGTGGAGGAGAAC
CAGCGGCTTCCTCCATGACCGGCAGAAGAAGAAGGCACGATACTCCGAGC
CCTCTCTCCCAGAGAAGAGGAGGCAGGCATGACACGCCTAGCCCTCCTCG
CTCCGGTGACCGAGGGGGACAGCAGCAGCACCAGCGCAAACGGCCCAGGT
CTCGATCTCAATCGCCTCGACGCTCCCCTGCCGATGATGGTGGTGTCAGT
AGAAAAAGGTACAGCAGCAGTGACAGCGAGGGTGAGGGCGACGGTGGCGA
CAAAGACCCCGCACGGCGGCGCAAGAAGCAGAGGAAGGACGAGAAGAAGG
CGAGGAAAAGAGAGAAGAAAAAGGCCAAGAGAAAGAGCAGCAGCAGGAGT
GACAAGCACCGCAAGAAGGGGGACAAGAAGAAGAGGGGCGGGGGCTACGA
CAGCAACAGCAGCAGCGATCAGGGGGGTGAAGAAGGCACCGGAGTAGCCA
GAGATGCAGCGACCGCAGACGCCGCCGCTGCTGGAGGGCCGACGCCCGCA
ACAGCTCGCTCGCAAATAGGATCGGCATCTCCACCAGCGATCGTGGACGA
GGACGCGCCGACCCCGCCGGGCAGCCCCGCCGCCGCCAGCGCAACGAAAC
CAAGCACGGAGGGACCGTTGGCCGTGAACGGAGGCGGAGGGGCGGACGAT
AAGGAGGCGTGTGTGGACGAAGACGCGCCGACCCCGCCGGCCAGCCCTCA
CAAGACAGCGGTGGAGGCACCCGCGGCAGGCAAGAACTCGTTCTTCGCTC
AGCTGCAGGCTTCGGAGCGAAAGAAAGGGACGGTAGGGACGATGCACGCC
ACGGGAAATCACGGCGTCTCGATCTCAATCGCCTCGACGCTCCCCTGCCG
ATGATGGTGGTGTCAGTAGAAAAAGGTACAGCAGCAGTGACAGCGAGGGT
GAGGGCGACGGTGGCGACAAAGACCCCGCACGGCGGCGCAAGAAGCAGAG
GAAGGACGAGAAGAAGGCGAGGAAAAGAGAGAAGAAAAAGGCCAAGAGAA
AGAGCAGCAGCAGGAGTGACAAGCACCGCAAGAAGGGGGACAAGAAGAAG
AGGGGCGGGGGCTACGACAGCAACAGCAGCAGCGATCAGGGGGGTGAAGA
AGGCACCGGAGTAGCCAGAGATGCAGCGACCGCAGACGCCGCCGCTGCTG
GAGGGCCGACGCCCGCAACAGCTCGCTCGCAAATAGGATCGGCATCTCCA
CCAGCGATCGTGGACGAGGACGCGCCGACCCCGCCGGGCAGCCCCGCCGC
CGCCAGCGCAACGAAACCAAGCACGGAGGGACCGTTGGCCGTGAACGGAG
GCGGAGGGGCGGACGATAAGGAGGCGTGTGTGGACGAAGACGCGCCGACC
CCGCCGGCCAGCCCTCACAAGACAGCGGTGGAGGCACCCGCGGCAGGCAA
GAACTCGTTCTTCGCTCAGCTGCAGGCTTCGGAGCGAAAGAAAGGGACGG
TAGGGACGATGCACGCCACGGGAAATCACGGC
back to top