mRNA_Ecto-sp9_F_contig10186.216.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10186.216.1
Unique NamemRNA_Ecto-sp9_F_contig10186.216.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10186.216.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH6_ECTSI)

HSP 1 Score: 619 bits (1596), Expect = 3.200e-220
Identity = 300/315 (95.24%), Postives = 312/315 (99.05%), Query Frame = 1 
Query:    1 TIQDSQMDEVTHVVSKAFQDFNTSIGAPVEVYEEEFGHPETGPGIIQSICKSHEAYGVVADGGAGKIVGVSFVDVHAKGSRVACLGPVSSIAPGAGKKSFVAACAYAEELGFSTLVLMQVAANSRSFSLYAKLGFETKHTCQYMGGFLDPPSEGSVPPPPAPSGVTLKAVVAGDIEECAELFLEAHGKGCGWDRRADITGCLESGAPFPMLVARDADGKVVGYTTGFYLMGHTVAKSQDIFCDMFRESSKLHQQAGLPCPRFHCPVEFTGLLSWALAQKGLKIFRATILMARGHYEHTPWQDAIGHVVAPSISGY 945
            TI+DSQMDEVTHVVS+AFQDFNTSIGAPVEVYEEEFGHPETGPGIIQSICKSHEAY VVADGGAGKIVGVSFVDVHAKGSRVACLGPVSSIAPGAGKKSFVAACAYAEELGFSTLVLMQ+AANSRSFSLYAKLGFETKHTCQYMGGFL+PPSEGS+ PPPAPSGVTLKA+VAGD+EECAE+FLEAHGKGCGWDRRADITGCLESGAPFPMLVARDADGKVVGYTTGFYLMGHTVAKSQDIFCDMFRESSKLHQQAGLPCPRFHCPVEFTGLLSWALAQKGL+IFRATI+MARGHYEHTPWQDAIG+VVAPS SG+
Sbjct:   13 TIKDSQMDEVTHVVSRAFQDFNTSIGAPVEVYEEEFGHPETGPGIIQSICKSHEAYAVVADGGAGKIVGVSFVDVHAKGSRVACLGPVSSIAPGAGKKSFVAACAYAEELGFSTLVLMQIAANSRSFSLYAKLGFETKHTCQYMGGFLEPPSEGSLSPPPAPSGVTLKAMVAGDVEECAEMFLEAHGKGCGWDRRADITGCLESGAPFPMLVARDADGKVVGYTTGFYLMGHTVAKSQDIFCDMFRESSKLHQQAGLPCPRFHCPVEFTGLLSWALAQKGLRIFRATIVMARGHYEHTPWQDAIGNVVAPSASGH 327
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10186.216.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW9_ECTSI)

HSP 1 Score: 541 bits (1395), Expect = 1.150e-189
Identity = 260/315 (82.54%), Postives = 289/315 (91.75%), Query Frame = 1 
Query:    1 TIQDSQMDEVTHVVSKAFQDFNTSIGAPVEVYEEEFGHPETGPGIIQSICKSHEAYGVVADGGAGKIVGVSFVDVHAKGSRVACLGPVSSIAPGAGKKSFVAACAYAEELGFSTLVLMQVAANSRSFSLYAKLGFETKHTCQYMGGFLDPPSEGSVPPPPAPSGVTLKAVVAGDIEECAELFLEAHGKGCGWDRRADITGCLESGAPFPMLVARDADGKVVGYTTGFYLMGHTVAKSQDIFCDMFRESSKLHQQAGLPCPRFHCPVEFTGLLSWALAQKGLKIFRATILMARGHYEHTPWQDAIGHVVAPSISGY 945
            +I DSQ+DEVT VVSKAFQDFNTSI  PVEVYEEEFGHP  GP +IQSICKS+E Y VV DGGAGKIVGVSFVDVHAKGS+VA LGPV+S+A GAGKKSFVAAC YAEELGFSTL+L Q+AANSRSFSLYAKLGFETKHT QY+GGFL+ PSEGS+P PPAPSGVTLKA+VAGD+EECAELFLEAHGK CGWDRRADITGCL SG PFPMLVARDA+GKVVGY+TGF+++GHTVAKSQDIFC MFRE SKLH+QAGLPCP+F+CPVEFTGLLSW LAQKGLK+FRA+++MARGHYEHTPW +A GH+VAPS +GY
Sbjct:   13 SINDSQVDEVTQVVSKAFQDFNTSINTPVEVYEEEFGHPAIGPTVIQSICKSYEGYAVVEDGGAGKIVGVSFVDVHAKGSKVATLGPVASLASGAGKKSFVAACDYAEELGFSTLILTQIAANSRSFSLYAKLGFETKHTVQYIGGFLEQPSEGSLPLPPAPSGVTLKAMVAGDVEECAELFLEAHGKDCGWDRRADITGCLGSGFPFPMLVARDANGKVVGYSTGFFMIGHTVAKSQDIFCYMFREGSKLHKQAGLPCPKFYCPVEFTGLLSWCLAQKGLKVFRASLIMARGHYEHTPWPNAAGHIVAPSTTGY 327
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10186.216.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH7_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 1.250e-77
Identity = 128/140 (91.43%), Postives = 133/140 (95.00%), Query Frame = 1 
Query:   19 MDEVTHVVSKAFQDFNTSIGAPVEVYEEEFGHPETGPGIIQSICKSHEAYGVVADGGAGKIVGVSFVDVHAKGSRVACLGPVSSIAPGAGKKSFVAACAYAEELGFSTLVLMQVAANSRSFSLYAKLGFETKHTCQYMGG 438
            MDEVTHVVSKAFQDFNTS+GAPVEVYEEEFGHPETGPGIIQSICKSHEAY VVADGGAGKIVGVSFVDVHAKGSRVACLGPVSSIAPGAGKKSFVAACAYAEELGFSTLVLMQ+AANSRSFSLYAKLGFE + + +   G
Sbjct:    1 MDEVTHVVSKAFQDFNTSMGAPVEVYEEEFGHPETGPGIIQSICKSHEAYAVVADGGAGKIVGVSFVDVHAKGSRVACLGPVSSIAPGAGKKSFVAACAYAEELGFSTLVLMQIAANSRSFSLYAKLGFEGQASLKVTTG 140
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BLAST of mRNA_Ecto-sp9_F_contig10186.216.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB4_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 7.010e-62
Identity = 141/333 (42.34%), Postives = 162/333 (48.65%), Query Frame = 1 
Query:   10 DSQMDEVTHVVSKAFQDFNTSIGAPVEVYEEEFGHPETGPGIIQ--------------------SICKSHEAYGV-VADGGAGKIVGVSFVDVHAKGSRVACLGPVSSIAPGAGKKSFVAACAYAEELGFSTLVLMQVAANSRSFSLYAKLGFETKHTCQYMGGFLDPPSEGSVPPPPAPSGVTLKAVVAGDIEECAELFLEAHGKGCGWDRRADITGCLESGAPFPMLVARDADGKVVGYTTGFYLMGHTVAKSQDIFCDMFRESSKLHQQAGLPCPRFHCPVEFTGLLSWALAQKGLKIFRATILMARGHYEHTPWQDAIGHVVAPSISGY 945
            DSQ+DEVT VVSKA QDFNTS+ APVEVYEE+FGHP  GP +IQ                    S   +H +    V DGGAGKIVGVSFVDVHAKGSRVA LGPV+S+A GAGK SFVAACAYAEELGFSTL                                                                                        +G P        +DGKVVGY+TG      T+                          RF+CPVEFTGLLSW LAQKGLK+FRA+++MARGH+EHTPW +A GH+VAPS +GY
Sbjct:    4 DSQVDEVTQVVSKACQDFNTSVNAPVEVYEEDFGHPAIGPTVIQRAGAFRPPCIRRKLGKIFISSNAPTHPSSSAPVEDGGAGKIVGVSFVDVHAKGSRVATLGPVASLASGAGKNSFVAACAYAEELGFSTL----------------------------------------------------------------------------------------AGGP-------RSDGKVVGYSTG------TI--------------------------RFYCPVEFTGLLSWCLAQKGLKVFRASLIMARGHFEHTPWPNATGHIVAPSTTGY 209
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10186.216.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2U2_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 2.930e-48
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 1 
Query:  688 MGHTVAKSQDIFCDMFRESSKLHQQAGLPCPRFHCPVEFTGLLSWALAQKGLKIFRATILMARGHYEHTPWQDAIGHVVAPSISGY 945
            MGHTVAKS DI CDMFRESSKLHQQAGLPCPRFHC VEFTGLLSWALAQ+GLKIFRATILMARGHYEHTPWQD IGH++AP+ SGY
Sbjct:    1 MGHTVAKSHDIICDMFRESSKLHQQAGLPCPRFHCRVEFTGLLSWALAQRGLKIFRATILMARGHYEHTPWQDTIGHLMAPTASGY 86
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10186.216.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T0_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.310e-40
Identity = 81/93 (87.10%), Postives = 84/93 (90.32%), Query Frame = 1 
Query:   19 MDEVTHVVSKAFQDFNTSIGAPVEVYEEEFGHPETGPGIIQSICKSHEAYGVVADGGAGKIVGVSFVDVHAKGSRVACLGPVSSIAPGAGKKS 297
            M EVTHVVSKAFQDFNTSI APVE+YEEEFG PETG G+IQSICKSHEAY VVADGG GKIVGV FVDVHAKGS+ ACLG VSSIAPGAGKKS
Sbjct:    1 MYEVTHVVSKAFQDFNTSIHAPVELYEEEFGCPETGTGMIQSICKSHEAYAVVADGGTGKIVGVPFVDVHAKGSKEACLGAVSSIAPGAGKKS 93
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10186.216.1 vs.
Match: N-acetyltransferase (domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9P0X9_PICSI)

HSP 1 Score: 100 bits (248), Expect = 7.800e-20
Identity = 86/283 (30.39%), Postives = 138/283 (48.76%), Query Frame = 1 
Query:   37 VVSKAFQDFNTSIGAPVEVYEEEFGHPETGPGIIQSICKSHEAYGVVA-DGGAGKIVGVSFVDVHAKGSRVACLGPVSSIAP-----GAGKKSFVAACAYAEELGFSTLVLMQVAANSRSFSLYAKLGFETKHTCQYMGGFLDPPSEGSVPPPPAPSGVTLKAVVAGDIEECAELFLEAHGKGCGWDRRADITGCLESGAPFPMLVARDADGKVVGYTTGFYLMGHTVAKSQDIFCDMFRESSKLHQQAGLPCPRFHCPVEFTG-LLSWALAQKGLKIFRATI 864
            ++ +AF  FN S+G P  V   ++G+ E    ++  + +S  +YG+ A D  +G  +G +F++    G  V  +GPV  + P     GAGK    A    A+    +++ L+Q+AAN++SFSLYAKLGF+      Y  G +D          P   G  +K +   D+  C+EL    H    G +R  DI   L++      +  +D    +  YTTGF L GH++A S+D F  +F     L ++ G      H P      L+ WAL ++GL++ R  +
Sbjct:   23 ILHRAFSQFNLSVGIPPHV---DYGNVEIAKKVLHEMLQSPSSYGITAFDNASGLPIGAAFLNFT--GESVQAVGPVF-VDPDWNNKGAGKALMNALIERAKATNATSIRLVQIAANTQSFSLYAKLGFQPVECISYFEGSMDENLHSGASFIP---GFKVKMMEESDVHACSEL----HKSVLGHERETDIRELLQTNPGNSWVAVKD--DILQAYTTGFCLEGHSIAISEDAFKTLFEVV--LCEKRGCSMT-IHIPGRIHPFLIDWAL-KRGLRLVRLRV 286
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10186.216.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DNJ0_EMIHU)

HSP 1 Score: 82.8 bits (203), Expect = 1.340e-13
Identity = 86/292 (29.45%), Postives = 120/292 (41.10%), Query Frame = 1 
Query:   19 MDEVTHVVSKAFQDFNTSIGAPVEVYEEEFGHPETGPGIIQSICKSHEAYGV-VADGGAGKIVGVSFVDVHAKGSRVACLGPVSSIAPGAGKKSFVAACAYAEELGFSTLVLMQVAANSRSFSLYAKLGFETKHTC-QYMGGFLDPPSEGSVPPPPAPSGVTLKAVVAGDIEECAELFLEAHGKGCGWDRRADITGCLESGAPFPMLVARDADGKVVGYTTGFYLMGHTVAKSQDIFCDMFRESSKL---HQQAG--LPCPRFHCPVEFTGLLSWALAQKGLKIFRATILMA 873
            +DE   +   AF  FN S+G   E    E       P  + S       + V VA    G +VG + ++       +   GP++S  PGAGK    A              +M+ AA   +           + TC +Y+G               AP+G  +K + A D+EEC+ L    H + C   R  DI   +  G P P  VARD  GKVVGYTTG YL GHTVA S++    +    S      Q AG  +P P    P + +    W LA+ G  + R    M+
Sbjct:    6 LDEAASIAFSAFNAFNESVGLAPEFPPREVVDV---PKYLYSSGLERPGFDVFVAVDEEGTVVGANMLEYQDGIGGIGXXGPIASKRPGAGKLLMQA--------------VMKAAAEHPACP---------RRTCIEYVGSGCCTAE--------APAGFVVKPLAASDVEECSAL----HEQVCASRRMGDIGSAV--GGPHPNAVARDEAGKVVGYTTGSYLSGHTVALSEEALQALVVAQSAAIAAAQAAGAPIPPPTLFVPHQHSAFARW-LARNGFLLTRQIASMS 256
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BLAST of mRNA_Ecto-sp9_F_contig10186.216.1 vs.
Match: GNAT (family N-acetyltransferase n=1 Tax=Mycobacterium goodii TaxID=134601 RepID=UPI001BDC3314)

HSP 1 Score: 80.1 bits (196), Expect = 5.310e-13
Identity = 78/282 (27.66%), Postives = 130/282 (46.10%), Query Frame = 1 
Query:   94 YEEEFGHPETGPGIIQSICKSHEAYGVVADGGAGKIVGVSFVDVHAKGSRVACLGPVSSIAP-----GAGKKSFVAACAYAEELGFSTLVLMQVAANSRSFSLYAKLGFETKHTCQYMGGFLDPPSEGSVPPPPAPSGVTLKAVVAGDIEECAELFLEAHGKGCGWDRRADITGCLESGAPFPMLVARDADGKVVGYTTGFYLMGHTVAKSQDIFCDMFRESSKLHQQAGLPCPRFHCPVEFTGLLSWALAQKGLKIFRATILMARGHYEH--TPWQDAIGH 918
            +  +F  P+    +I  +  ++  +GVVA+   G+++G +F+D     S V  +GPV+ + P     G G+    AA   A E   S++ LMQ A +SRSF LYAKLGF  + +   + G          P P     + ++      ++ C  L    H    G+DR  ++   +   A    +V R+   ++  YT+G  L GH++A+S     D+    + +      P   F  P+    LL W LA +GL+I  +  LM  G Y    TP+  ++G+
Sbjct:   33 FPRDFATPKEATDLISRLIDNNSFFGVVAERN-GEVIGSNFLDER---STVTSVGPVT-VDPRAQDKGVGRALVTAALDRARETRASSVRLMQSAYHSRSFGLYAKLGFTYRESFAVVQG----------PSPQDDDSLVVRRADPPVLDACDILCRGTH----GFDRHGEVNDSIA--AQTAHVVERE--DRITAYTSGVGLFGHSIAESN---ADL---QALIAATDDYPGTGFLLPLRNASLLQWCLA-RGLRIVSSMNLMTIGRYYEPTTPYLASVGY 284
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10186.216.1 vs.
Match: GNAT (family N-acetyltransferase n=1 Tax=Streptomyces piniterrae TaxID=2571125 RepID=A0A4U0NG49_9ACTN)

HSP 1 Score: 80.1 bits (196), Expect = 5.380e-13
Identity = 79/263 (30.04%), Postives = 116/263 (44.11%), Query Frame = 1 
Query:  115 PETGPGIIQSICKSHEAYGVVADGGAGKIVGVSFVDVHAKGSRVACLGPVSSIAPGA-----GKKSFVAACAYAEELGFSTLVLMQVAANSRSFSLYAKLGFETKHTCQYMGGFLDPPSEGSVPPPPAPSGVTLKAVVAGDIEECAELFLEAHGKGCGWDRRADITGCLESGAPFPMLVARDADGKVVGYTTGFYLMGHTVAKS-QDIFCDMFRESSKLHQQAGLPCPRFHCPVEFTGLLSWALAQKGLKIFRATILMARGHY 885
            PE   G+++ +      Y VVA+   G+I+G +F+D     S V  +GPV+ +APGA     G++        A E     + L+Q   +SRSF+LYA LGFE + T   M G   PP  G VP      G  ++     D+E C ++    H    G DR  ++   L+SG     +     D ++ GY T      H V +S +DI        + +        P    P   + LL WAL + GLK+     LM  G Y
Sbjct:   40 PEAATGVVEMMLNHPGIYSVVAERD-GEIMGSNFLDER---SPVVGVGPVT-VAPGAQNGGVGRRLMQDVMQRAAERHAPGIRLLQSGYHSRSFALYAGLGFEFRETMACMQG---PPIGGMVP------GYEVRPATDADLEACNQVCRRVH----GIDRGGEVADALKSGTARVTV----HDERITGYATDLSFFAHAVGESTEDI-------RALIASAPAFGGPGILIPARDSALLQWAL-RNGLKVSELMSLMTIGLY 272
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10186.216.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.200e-22095.24protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH6... [more]
Uncharacterized1.150e-18982.54protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.250e-7791.43protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.010e-6242.34protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.930e-4889.53protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.310e-4087.10protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
N-acetyltransferase7.800e-2030.39domain-containing protein n=1 Tax=Picea sitchensis... [more]
Uncharacterized1.340e-1329.45protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID... [more]
GNAT5.310e-1327.66family N-acetyltransferase n=1 Tax=Mycobacterium g... [more]
GNAT5.380e-1330.04family N-acetyltransferase n=1 Tax=Streptomyces pi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10186contigEcto-sp9_F_contig10186:2..4567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score613.6
Seed ortholog evalue5e-173
Seed eggNOG ortholog2880.D7FRH6
EggNOG OGs2EA42@1,2SGDE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons7
Model size1553
Cds size930
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928213.8054752-UTR-Ecto-sp9_F_contig10186:1..6061622928213.8054752-UTR-Ecto-sp9_F_contig10186:1..606Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10186 2..606 -
1692277797.773564-UTR-Ecto-sp9_F_contig10186:1..6061692277797.773564-UTR-Ecto-sp9_F_contig10186:1..606Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10186 2..606 -
1622928213.9352314-UTR-Ecto-sp9_F_contig10186:4549..45671622928213.9352314-UTR-Ecto-sp9_F_contig10186:4549..4567Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10186 4550..4567 -
1692277797.8537164-UTR-Ecto-sp9_F_contig10186:4549..45671692277797.8537164-UTR-Ecto-sp9_F_contig10186:4549..4567Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10186 4550..4567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928213.8195052-CDS-Ecto-sp9_F_contig10186:606..7721622928213.8195052-CDS-Ecto-sp9_F_contig10186:606..772Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10186 607..772 -
1692277797.7842774-CDS-Ecto-sp9_F_contig10186:606..7721692277797.7842774-CDS-Ecto-sp9_F_contig10186:606..772Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10186 607..772 -
1622928213.8382454-CDS-Ecto-sp9_F_contig10186:1407..15131622928213.8382454-CDS-Ecto-sp9_F_contig10186:1407..1513Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10186 1408..1513 -
1692277797.7943344-CDS-Ecto-sp9_F_contig10186:1407..15131692277797.7943344-CDS-Ecto-sp9_F_contig10186:1407..1513Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10186 1408..1513 -
1622928213.8570075-CDS-Ecto-sp9_F_contig10186:2382..24291622928213.8570075-CDS-Ecto-sp9_F_contig10186:2382..2429Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10186 2383..2429 -
1692277797.806305-CDS-Ecto-sp9_F_contig10186:2382..24291692277797.806305-CDS-Ecto-sp9_F_contig10186:2382..2429Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10186 2383..2429 -
1622928213.8744483-CDS-Ecto-sp9_F_contig10186:2712..29331622928213.8744483-CDS-Ecto-sp9_F_contig10186:2712..2933Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10186 2713..2933 -
1692277797.8149326-CDS-Ecto-sp9_F_contig10186:2712..29331692277797.8149326-CDS-Ecto-sp9_F_contig10186:2712..2933Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10186 2713..2933 -
1622928213.8882494-CDS-Ecto-sp9_F_contig10186:3487..35501622928213.8882494-CDS-Ecto-sp9_F_contig10186:3487..3550Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10186 3488..3550 -
1692277797.8243344-CDS-Ecto-sp9_F_contig10186:3487..35501692277797.8243344-CDS-Ecto-sp9_F_contig10186:3487..3550Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10186 3488..3550 -
1622928213.9024882-CDS-Ecto-sp9_F_contig10186:3967..41691622928213.9024882-CDS-Ecto-sp9_F_contig10186:3967..4169Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10186 3968..4169 -
1692277797.8338587-CDS-Ecto-sp9_F_contig10186:3967..41691692277797.8338587-CDS-Ecto-sp9_F_contig10186:3967..4169Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10186 3968..4169 -
1622928213.9197454-CDS-Ecto-sp9_F_contig10186:4424..45491622928213.9197454-CDS-Ecto-sp9_F_contig10186:4424..4549Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10186 4425..4549 -
1692277797.8439121-CDS-Ecto-sp9_F_contig10186:4424..45491692277797.8439121-CDS-Ecto-sp9_F_contig10186:4424..4549Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10186 4425..4549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10186.216.1prot_Ecto-sp9_F_contig10186.216.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10186 607..4549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10186.216.1

>prot_Ecto-sp9_F_contig10186.216.1 ID=prot_Ecto-sp9_F_contig10186.216.1|Name=mRNA_Ecto-sp9_F_contig10186.216.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=310bp
MDEVTHVVSKAFQDFNTSIGAPVEVYEEEFGHPETGPGIIQSICKSHEAY
GVVADGGAGKIVGVSFVDVHAKGSRVACLGPVSSIAPGAGKKSFVAACAY
AEELGFSTLVLMQVAANSRSFSLYAKLGFETKHTCQYMGGFLDPPSEGSV
PPPPAPSGVTLKAVVAGDIEECAELFLEAHGKGCGWDRRADITGCLESGA
PFPMLVARDADGKVVGYTTGFYLMGHTVAKSQDIFCDMFRESSKLHQQAG
LPCPRFHCPVEFTGLLSWALAQKGLKIFRATILMARGHYEHTPWQDAIGH
VVAPSISGY*
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mRNA from alignment at Ecto-sp9_F_contig10186:2..4567-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10186.216.1 ID=mRNA_Ecto-sp9_F_contig10186.216.1|Name=mRNA_Ecto-sp9_F_contig10186.216.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4566bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10186:2..4567- (Ectocarpus species9 EcSCA_722f female)
ACGATACAGGACTCTCAGATGGATGAGGTGACTCACGTCGTGAGCAAGGC
GTTTCAAGATTTCAACACCTCCATCGGCGCCCCCGTAGAGGTGTACGAAG
AGGAGTTCGGACACCCTGAGACGGGCCCGGGCATTATTCAAAGGTCAGCG
CGGGAACAAAACCAGCGCACGTGGACCGACGCCCAACGACAGACCCCAAC
TGCTGCAACGCCAATCCCTGTGTTCAGAGCAACCGCCGTTCTTTACAGAC
CCCCTTGCGTGCATCGGAAGCTGGGAAAAATCTGTAGTTCAATGCACAGC
AACGCGCCGAACATCCCTCCTGTTGCACTCGTACGCGCCACCTACCCCCC
CCCCCTCCCCTGCTCCCGCGGTTCCAAAATTCACACCCTTGTTTCCAGCA
TCTGCAAGTCACACGAGGCCTACGGGGTGGTGGCGGACGGCGGGGCCGGC
AAGATCGTGGGCGTGTCCTTCGTCGACGTGCACGCGAAAGGTTCAAGGGT
GGCCTGCCTGGGGCCCGTGTCGTCCATAGCCCCCGGTGCCGGCAAGAAGT
CGTTCGTGGCCGCTTGCGCCTACGCCGAGGAGCTCGGTTTCTCTACCCTG
GTGAGAACGGTGGCGACCAAAAGGGCGCGTCTTGGGTGGGGGAGCTGGCC
AGCAAGGTTTGACGATCATCGCCGGTGACTTCGTGGCAGAATTTTGACTT
TTGTGGCCAGAGAGTCCAATCTCTGCGTACCCAAGTTTCTTGCCTCTCTC
CATTGCTAGGCGGACCTTTGGGAGAAGCCAATCAACGTCAGTGTATGTGT
CCTGGTCAACCAGCCTACCACGTCCTCCCCTCCACTTCTTGGTTGTATTG
AGTATATCTCACGCATGTGCATGTCAGCCTGCAAGCATTCGTCGACCGGT
GCGTTCTTGTTGGTGAGGTGTGTGCTTGCTCCCCTCTTTTTCTTCCCTCG
CTTGCCTCTTCGCCCTATGTTTGTTTTTTAACCGGTTCTGTCTACCTCCC
GCTCGGTCTGGCCACAGGTCCTGATGCAAGTCGCGGCCAACTCGCGATCG
TTCTCCCTGTACGCCAAGCTCGGATTCGAGGTGAAAACAGCACCTCCCTT
GTTGGTATTTTCCTTTTGGCGCCTTACGTAAACGACACGATTTGCAGGGC
GCATAGCGCTGGGGGCACGGTGTGGGCGCATAGCAGTGGGGGCACCGTGT
GTCCTGTCGCCATACACAAAAGCCGTGTGTATTGACGTTCTTGTGTCCCA
ATATGCACCCCCCCGCGACTTCGGGGCCTTTCCCCCTATTTCTACTAGCC
CGCAATGACTCACCTTTCAGCACCAACATAATCAAGTAGGGACAAGCGTC
TCTGAAAGTGACCACGGGTTCGAGAATCGGGGCTTCATTCGCGCGCTCAA
CACTGCCTCTTCCGTACGCTTGATCCCTCTGAGTTCACGTGGTCCGTCCT
GCATGGTCGCGAGGACGCAAGGTTTGGGTCAGACATAGAAAGCTCCACCA
CACGCAGCAAGTGTACACTCACCCCAGCGTGCCCTTTCATCGACCTTCCT
CCACACCACCCGCCGCGTTCGCCTTAGTAAACGAATAATTACCGCCGCAA
CAGTAACAAACCACTCCCTTTTCTACCTCGCCAGACCAAGCACACGTGCC
AATACATGGGAGGATTCTTGGATCCGCCGTCTGAGGGGAGCGTGCCGCCC
CCCCCCGCGCCTAGCGGGGTAACCCTAAAGGCCGTGGTCGCGGGAGATAT
CGAGGAATGCGCGGAATTGTTTCTCGAGGCACACGGGAAGGGCTGCGGCT
GGGACCGCCGTGCGGATATCACCGGTTGCTTGGAGTCCGGCGCCCCGTTC
CCGATGTGAGTTGGGTCAGCTGAGCGAGGGATGTGGGTAAGGAATGGAGT
GGGCATTTTGGTCATTACGAGAGTACACTGCTTTTTGTTCCCGGATAGCG
TGGTGGACCAATGTGTCTGGGAAAAGGGAATTCGCTCATAAGTTGCTCCC
GCAACATGTAACCGGTATTAGAATTCCGTGACCACGACTTTGCCCCCGCT
CTCTCCGTTTGCTCTTCGTGCATGGCATCATCCATTGCTGCTATCCCGTT
TTCACCGGCGAACGGCGGGGGATCGACGGACACTGCAGGCTGGTGGCCCG
AGATGCAGATGGCAAGGTAGTTGGCTACACCACAGGTAGGCTACATGTAT
AAATGCTCCGTTGGCACGACGTATCATCAACGATTGGCTATATTTACACG
GTCGTGTGGCCTTATTTTGCGGAAGGCTGTGATTGCAAGGCGTACCGTGA
GGGACCTTGACGCAATTGACCAGGATGCATGTTGATTCACGGAAAACAAC
CACCACGGAAATGGAGAACAACGCTACCAAACCATCAGCAAGCAGGACAA
GAGTTGATCGCAGGAAACCATAAGATCGGCAAGGAATGACGCTATAATCG
GGGCGGGGAGGGCAGGAAGCCAACTCGGAAGACCACATCCTTCACACAAG
TACAACATCTGGTGTTACCTCGGCACACTCGCAAACATCCGGGGCCACGC
AAGTTCCATTATTGAAGCACCCGCGCACGGCCTGAGCAACGCATTCGCCG
CCTTCCATCTGCAGTACGAAGTGCAAAGATGGGGTTGCATTTGTTCTTTG
GCCCAAATGAGAAAAAATATGGCAACATTTGGATTTCCAGATGCCCCAAA
TGCGACAAGCATGTGCTACCGACTACAGTGCGGGGCCAAGGGCTACAGCG
CAACGATGCGCGCCCTGCCTCGAGCAGGCGTAGACAGGCCTAACGTCACG
ACGGTACCAGGACCATTGTTTCCCACGAGCTGATTTGTTGTTGTAGCGCG
CCTCCCACCATCTCTCTGCGCGGTTGTTGTACCGTGACGTGTGTGCCCAT
CATAATAAGCCCGGTCGCTCTTAAAGGTTGAGTTTGTCGTTGTTTGCTGT
GCCTGTCCTGTGTCGTGTGCGCTTCCGTGGTGGTGGGGGCGGTGTTGGGG
TTCGGCCTTGCTTCGGGGGGTCGATAACTGCTTCGGGTCCGTGGAATCCG
CAAGGTTTCTACCTAATGGGACATACCGTGGCGAAGTCGCAGGACATCTT
CTGCGACATGTTCCGAGAGAGCTCGAAGCTGCACCAACAGGCTGGACTGC
CTTGCCCAAGGTAATATCTCTCGCCTTCCCCATGTCTGGTCAACTTTGGC
TCCGCGAAACACTCTTTGGCAGCCTTCAGAGATCACGTTGCCCGAAGTCA
TGTTTCCCGCCACTAAAGCAGATGTTTTGGATTTGCGGCACGCTCCACCA
TCAGCGTACAATGCTTCCACTTACCTCGCCGCTTCAGTGTTGTACCGTGG
CTTGAGCTCGGGGACATGGACAGATTCCTCTCACGGAGCCCCCTCTCCCT
GTTTGCACCTGCCGTGGGGCAACGACATGTATGCTTTGACTGTTCCGTGT
ACCTTGTACTGCGTCCGATGATTGTAGCTCGCGGTATGTACGAAAACCAG
GCGGTGAAAAACCTCTGCACACACTCTTGGTAGAAGGGCTCCACCTCCCA
GAGCGTTTCAGCGATGTGTAGGGACGACATCAACAATCCCAGGACCCCCG
ACTATCAGTGCTGGAGCAGCCACACCCTGCCATACATGGCTCTGACCCCC
CCGCCCACCACCCTACACACCCCAGCGCAAAAGACACGAATCGTCCATGG
CGTGGCGTCTCTCGTGGTTTGATGGATGTGTGCATCATGCGATGGAACTT
GTTGATCGATCTATTGCATGTATCCTACCGCGTGTGTGTTTTCAGGTTCC
ACTGTCCCGTAGAGTTCACGGGCCTCTTATCGTGGGCCTTGGCGCAGAAA
GGGCTCAAGATTTTCCGGGCGACGATCCTCATGGCCAGAGGGCACTACGA
GCACACCCCGTGGCAGGACGCCATCGGGCACGTCGTGGCCCCGAGTATCA
GCGGGTATTGAAAAACCGCAACCTTCAACCTTCGCAGGCCGACGAAACTT
AAAGCGTCGACCTCTTCACAAGGGTGTGTGCCTTCGACGCTGTTTTTTCA
GACGCCCTGTTGTAGGAATTGTGATTGTGTCATGTCACTCGTGGGTCTTG
TCTTTGCGTGTATGTCCGTATGAGTGCCGGGGACACACCGTGTTTGTGTC
CGATGAAACCGTACGCCCATCGCTCCAACTGTTTTTTTGGAAACATTCGA
CTTAATGCCAGAAAACGGCCTGTCTCTGTGCACGTATGTGGCGAGGTAGC
TGTGTGTTGGCAAGCACGTGACTGCTGTTGGTAGCCGTGCACTGGAAGGT
GCAAGGTGGGGTGTAAACGTGGCGTACATTTTGTGTTGCGTGCGTGCGTT
CGTGCGGGAAAATGTACTCTTCTACAGGGGGGAATGTGGTTGAGGAGCCG
ATGTGTTCGTGTTGGCATTGTATGTGTCGTGTAGCTCCCCTTCCCTCCCC
GATCCTGCGGAGGAGGGTTTGCTTGTTGTCGTTGTCGTCGTCGTTGTATA
GTCCGTGCACAACAATGAATCCATAAATTCCCCCAGCACAAATGACAACT
TTTCTCTGCACACAGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10186:2..4567-

>mRNA_Ecto-sp9_F_contig10186.216.1 ID=mRNA_Ecto-sp9_F_contig10186.216.1|Name=mRNA_Ecto-sp9_F_contig10186.216.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1860bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10186:2..4567- (Ectocarpus species9 EcSCA_722f female)
ATGGATGAGGTGACTCACGTCGTGAGCAAGGCGTTTCAAGATTTCAACAC
CTCCATCGGCGCCCCCGTAGAGGTGTACGAAGAGGAGTTCGGACACCCTG
AGACGGGCCCGGGCATTATTCAAAGATGGATGAGGTGACTCACGTCGTGA
GCAAGGCGTTTCAAGATTTCAACACCTCCATCGGCGCCCCCGTAGAGGTG
TACGAAGAGGAGTTCGGACACCCTGAGACGGGCCCGGGCATTATTCAAAG
CATCTGCAAGTCACACGAGGCCTACGGGGTGGTGGCGGACGGCGGGGCCG
GCAAGATCGTGGGCGTGTCCTTCGTCGACGTGCACGCGAAAGGTTCAAGG
GTGGCCTGCCTGGGGCCCGTGTCGTCCATAGCCCCCGGTGCCGGCAAGAA
GTCGTTCGTGGCCGCTTGCGCCTACGCCGAGGAGCTCGGTTTCTCTACCC
TGCATCTGCAAGTCACACGAGGCCTACGGGGTGGTGGCGGACGGCGGGGC
CGGCAAGATCGTGGGCGTGTCCTTCGTCGACGTGCACGCGAAAGGTTCAA
GGGTGGCCTGCCTGGGGCCCGTGTCGTCCATAGCCCCCGGTGCCGGCAAG
AAGTCGTTCGTGGCCGCTTGCGCCTACGCCGAGGAGCTCGGTTTCTCTAC
CCTGGTCCTGATGCAAGTCGCGGCCAACTCGCGATCGTTCTCCCTGTACG
CCAAGCTCGGATTCGAGGTCCTGATGCAAGTCGCGGCCAACTCGCGATCG
TTCTCCCTGTACGCCAAGCTCGGATTCGAGACCAAGCACACGTGCCAATA
CATGGGAGGATTCTTGGATCCGCCGTCTGAGGGGAGCGTGCCGCCCCCCC
CCGCGCCTAGCGGGGTAACCCTAAAGGCCGTGGTCGCGGGAGATATCGAG
GAATGCGCGGAATTGTTTCTCGAGGCACACGGGAAGGGCTGCGGCTGGGA
CCGCCGTGCGGATATCACCGGTTGCTTGGAGTCCGGCGCCCCGTTCCCGA
TACCAAGCACACGTGCCAATACATGGGAGGATTCTTGGATCCGCCGTCTG
AGGGGAGCGTGCCGCCCCCCCCCGCGCCTAGCGGGGTAACCCTAAAGGCC
GTGGTCGCGGGAGATATCGAGGAATGCGCGGAATTGTTTCTCGAGGCACA
CGGGAAGGGCTGCGGCTGGGACCGCCGTGCGGATATCACCGGTTGCTTGG
AGTCCGGCGCCCCGTTCCCGATGCTGGTGGCCCGAGATGCAGATGGCAAG
GTAGTTGGCTACACCACAGGCTGGTGGCCCGAGATGCAGATGGCAAGGTA
GTTGGCTACACCACAGGTTTCTACCTAATGGGACATACCGTGGCGAAGTC
GCAGGACATCTTCTGCGACATGTTCCGAGAGAGCTCGAAGCTGCACCAAC
AGGCTGGACTGCCTTGCCCAAGGTTTCTACCTAATGGGACATACCGTGGC
GAAGTCGCAGGACATCTTCTGCGACATGTTCCGAGAGAGCTCGAAGCTGC
ACCAACAGGCTGGACTGCCTTGCCCAAGGTTCCACTGTCCCGTAGAGTTC
ACGGGCCTCTTATCGTGGGCCTTGGCGCAGAAAGGGCTCAAGATTTTCCG
GGCGACGATCCTCATGGCCAGAGGGCACTACGAGCACACCCCGTGGCAGG
ACGCCATCGGGCACGTCGTGGCCCCGAGTATCAGCGGGTATTGAGTTCCA
CTGTCCCGTAGAGTTCACGGGCCTCTTATCGTGGGCCTTGGCGCAGAAAG
GGCTCAAGATTTTCCGGGCGACGATCCTCATGGCCAGAGGGCACTACGAG
CACACCCCGTGGCAGGACGCCATCGGGCACGTCGTGGCCCCGAGTATCAG
CGGGTATTGA
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