mRNA_Ecto-sp9_F_contig10183.215.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10183.215.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGT9_ECTSI) HSP 1 Score: 288 bits (737), Expect = 1.940e-94 Identity = 150/165 (90.91%), Postives = 155/165 (93.94%), Query Frame = 2
Query: 2 IVSAGAGMDTRGLRLRASGDTKVFEVDQALMLRVKSALFT*AAAAADEVAAAVAGFRERRDGGVGQGRIVPVEADLSVEGWQGELLEAGFDPSQPSAWILEGLTMYLEEEDLVALLRVLASLSSPGSAFCATCVSAESVERAQNSADPLMSRWKWGGDNPQAFFE 496
IVS GAGMDTRGLRLRASGDTKVFEVDQAL+LRVK AL T AAAADEVAAA+AGFRERRDGGVGQGR+VPVEADLSVEGWQGEL EAGFDPS PSAWILEGLTMYLEE++LVALLRVLASLSSPGSAFCATCVSAESVERAQNSA PLM RWKWG DNPQAFFE
Sbjct: 178 IVSLGAGMDTRGLRLRASGDTKVFEVDQALVLRVKGALLT-QAAAADEVAAALAGFRERRDGGVGQGRVVPVEADLSVEGWQGELFEAGFDPSLPSAWILEGLTMYLEEKELVALLRVLASLSSPGSAFCATCVSAESVERAQNSASPLMGRWKWGSDNPQAFFE 341
BLAST of mRNA_Ecto-sp9_F_contig10183.215.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP3_ECTSI) HSP 1 Score: 254 bits (649), Expect = 3.120e-82 Identity = 138/165 (83.64%), Postives = 144/165 (87.27%), Query Frame = 2
Query: 2 IVSAGAGMDTRGLRLRASGDTKVFEVDQALMLRVKSALFT*AAAAADEVAAAVAGFRERRDGGVGQGRIVPVEADLSVEGWQGELLEAGFDPSQPSAWILEGLTMYLEEEDLVALLRVLASLSSPGSAFCATCVSAESVERAQNSADPLMSRWKWGGDNPQAFFE 496
IVS GAGMDTRGLR RASGDTKVFEVDQAL+LRVKSAL T AAAADEVAAA+AGFRERRDGGVGQGR+VPV+A LSVEGWQGEL EAG DPS PSAWILEGL MYLEE++LVALLRVLASLSSPGSAFCAT VSAESVER SA P M RWK G D P AFFE
Sbjct: 83 IVSLGAGMDTRGLRRRASGDTKVFEVDQALVLRVKSALLT-QAAAADEVAAALAGFRERRDGGVGQGRVVPVQAALSVEGWQGELFEAGSDPSLPSAWILEGLNMYLEEKELVALLRVLASLSSPGSAFCATYVSAESVERTHISASPPMGRWKRGSDKPPAFFE 246
BLAST of mRNA_Ecto-sp9_F_contig10183.215.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP1_ECTSI) HSP 1 Score: 147 bits (371), Expect = 3.360e-43 Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 2
Query: 23 MDTRGLRLRASGDTKVFEVDQALMLRVKSALFT*AAAAADEVAAAVAGFRERRDGGVGQGRIVPVEADLSVEGWQGELLEAGFDPSQPSA 292
MDTRGLRLR SGDTKVFEVDQAL+LRVKSAL T AAAADEVAAAVAGFRERRD GVGQGR+VPVEADL VEGWQGEL EAGFDPS PSA
Sbjct: 1 MDTRGLRLRVSGDTKVFEVDQALVLRVKSALLT-QAAAADEVAAAVAGFRERRDRGVGQGRVVPVEADLRVEGWQGELFEAGFDPSLPSA 89
BLAST of mRNA_Ecto-sp9_F_contig10183.215.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JUQ0_CHABU) HSP 1 Score: 107 bits (267), Expect = 5.060e-24 Identity = 64/171 (37.43%), Postives = 93/171 (54.39%), Query Frame = 2
Query: 2 IVSAGAGMDTRGLRLRASGDTK-------VFEVDQALMLRVKSALFT*AAAAADEVAAAVAGFRERRDGGVGQGRIVPVEADLSVEGWQGELLEAGFDPSQPSAWILEGLTMYLEEEDLVALLRVLASLSSPGSAFCATCVSAESVERAQNSADPLMSRWKWGGDNPQAFF 493
+V GAGMD R RL + +FEVD+A ++R K + AA E V E+R V V ADL + W L AGF+ +P+ W++EGL MYL+E+ ++ ++ ++ SSPGS+ T VS E+V++ + S+ LM WKWG DNP+AFF
Sbjct: 375 VVILGAGMDARAWRLLGQATSANSPKASVIFEVDRADVIRAKEVILAKIAA---EGKLPVLQLAEQR---------VAVAADLQSDNWYAALRSAGFEVGKPTVWLMEGLLMYLKEDSVLVMMNLITMASSPGSSIVTTGVSWEAVKKGKASSHGLMREWKWGCDNPEAFF 533
BLAST of mRNA_Ecto-sp9_F_contig10183.215.1 vs.
Match: Hypothetical (protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WXA3_9CHLO) HSP 1 Score: 92.0 bits (227), Expect = 6.440e-19 Identity = 65/168 (38.69%), Postives = 88/168 (52.38%), Query Frame = 2
Query: 2 IVSAGAGMDTRGLRLRASGDTKV---FEVDQALMLRVKSALFT*AAAAADEVAAAVAGFRERRDGGVGQGRIVPVEADLSVEGWQGELLEAGFDPSQPSAWILEGLTMYLEEEDLVALLRVLASLSSPGSAFCATCVSAESVERAQNSA-DPLMSRWKWGGDNPQAFF 493
+V GAGMD+R RL+ S + FEVD +L K + AAA +A R+R + V A+L E W LL AGF+ S P+ W+ EGL MYLE + L + LS+PGSA + V++ SV +AQ S LM WKWG ++P+AFF
Sbjct: 144 VVLLGAGMDSRVFRLKTSSGYQAEVAFEVDLPEVLAAKQVVLDRCAAAGTLPELQLA--RKR----------IAVGANLEEEAWDWRLLAAGFNRSLPTVWLAEGLLMYLEPAAVDRLAAKIFRLSAPGSALLVSMVNSVSVAKAQASQKSALMQTWKWGSNDPRAFF 299
BLAST of mRNA_Ecto-sp9_F_contig10183.215.1 vs.
Match: SAM-dependent (methyltransferase n=1 Tax=Streptomyces sp. MUM 178J TaxID=2791991 RepID=UPI001F049D51) HSP 1 Score: 87.4 bits (215), Expect = 1.250e-17 Identity = 59/170 (34.71%), Postives = 89/170 (52.35%), Query Frame = 2
Query: 2 IVSAGAGMDTRGLRLRASGDTKVFEVDQALMLRVKSALFT*AAAAADEVAAAVAGFRERRDGGVGQGRIVPVEADLSVEGWQGELLEAGFDPSQPSAWILEGLTMYLEEEDLVALLRVLASLSSPGSAFCATCVSAE--SVERAQNSADPLMSRW----KWGGDNPQAFF 493
IVSA +GMD R RL + FE+D+A +L K D +A AV R V ADL+ W+ L++AG+DP+ PSAW+LEG+ YL EE + LL + +++PGS A V+A ++ +A+ D + +RW ++G D+P+A F
Sbjct: 104 IVSAASGMDARAYRLHWPPGLRYFEIDRAAVLAYKR----------DRLADAVPRAEHRA-----------VAADLTSPDWEARLVDAGYDPALPSAWLLEGMLYYLPEEAVCRLLDRIRRITAPGSVLAADLVNAAGLTLPQARGQLD-VFARWGCPWQYGADDPEALF 251
BLAST of mRNA_Ecto-sp9_F_contig10183.215.1 vs.
Match: SAM-dependent (methyltransferase n=1 Tax=unclassified Leptolyngbya TaxID=2650499 RepID=UPI001681D488) HSP 1 Score: 86.3 bits (212), Expect = 3.320e-17 Identity = 57/169 (33.73%), Postives = 87/169 (51.48%), Query Frame = 2
Query: 2 IVSAGAGMDTRGLRLRASGDTKVFEVDQALMLRVKSALFT*AAAAADEVAAAVAGFRERRDGGVGQGRIVPVEADLSVEGWQGELLEAGFDPSQPSAWILEGLTMYLEEEDLVALLRVLASLSSPGSAFCATCVSAESV---ERAQNSADP-LMSRWKWGGDNPQAFFE 496
+V GAG+DTR RL ++FEVD A +L K+ G + V + DL W +L GF+ ++P+AW+LEG+ MYLEE ++V LLR +ASLS+ GS+ + +S S+ +AQ + D ++ W+WG D+P FF+
Sbjct: 100 VVLLGAGLDTRAYRLSWHTGIRIFEVDDAELLAYKTHCL----------------------GHPSEVSHVLLPGDLRELSWVEKLHTLGFNFNKPTAWLLEGVLMYLEEAEVVRLLRAIASLSAQGSSLHSDVLSTASILASNQAQKANDGRVVQHWQWGCDHPTPFFQ 246
BLAST of mRNA_Ecto-sp9_F_contig10183.215.1 vs.
Match: S-adenosyl-L-methionine-dependent (methyltransferase n=1 Tax=Streptomyces sporangiiformans TaxID=2315329 RepID=A0A505DA45_9ACTN) HSP 1 Score: 85.9 bits (211), Expect = 4.030e-17 Identity = 59/170 (34.71%), Postives = 86/170 (50.59%), Query Frame = 2
Query: 2 IVSAGAGMDTRGLRLRASGDTKVFEVDQALMLRVKSALFT*AAAAADEVAAAVAGFRERRDGGVGQGRIVPVEADLSVEGWQGELLEAGFDPSQPSAWILEGLTMYLEEEDLVALLRVLASLSSPGSAFCATCVSAESVERAQ-NSADPLMSRW--KW--GGDNPQAFFE 496
IV A AGMD+R RLR G + FEVD+ +L K+ +V VA PV DL+ + W+ L++AG+DPS PS W+LEGL Y+ E D +L+ +A++S+PGS A V+A ++ + +RW W G D P+A F+
Sbjct: 93 IVLAPAGMDSRAYRLRWPGHIRYFEVDRPAVLEFKADRLR-------DVTPRVAHH--------------PVAVDLTADDWEQRLVDAGYDPSLPSTWLLEGLLYYIPEADTHRMLQRVAAVSAPGSRIAADLVNAAALTLPHMRGLLDVFARWGCPWVFGSDEPEALFD 241
BLAST of mRNA_Ecto-sp9_F_contig10183.215.1 vs.
Match: SAM-dependent (methyltransferase n=1 Tax=Streptomyces sp. DASNCL29 TaxID=2583819 RepID=UPI00110FBDEA) HSP 1 Score: 85.9 bits (211), Expect = 4.030e-17 Identity = 57/170 (33.53%), Postives = 83/170 (48.82%), Query Frame = 2
Query: 2 IVSAGAGMDTRGLRLRASGDTKVFEVDQALMLRVKSALFT*AAAAADEVAAAVAGFRERRDGGVGQGRIVPVEADLSVEGWQGELLEAGFDPSQPSAWILEGLTMYLEEEDLVALLRVLASLSSPGSAFCATCVSAESVE--RAQNSADPLMS---RWKWGGDNPQAFFE 496
IV A +GMD+R RLR G + FE+D+ +L K+ +R G Q V ADL+ + W L+ AG+DPS PSAW+LEGL Y+ E D L +A+LS+PGS A V+A ++ + D + W +G + P+A F+
Sbjct: 93 IVVAPSGMDSRAYRLRWPGHIRYFEIDRPAVLEFKA---------------------DRLQGVAPQVNHSTVAADLTADDWAARLIGAGYDPSLPSAWLLEGLLYYIPEPDAHRALERVAALSAPGSLIAADLVNAAALALPHMRGLLDVFANWGCPWLFGSEEPEALFD 241
BLAST of mRNA_Ecto-sp9_F_contig10183.215.1 vs.
Match: S-adenosyl-L-methionine-dependent (methyltransferase n=1 Tax=Streptomyces colonosanans TaxID=1428652 RepID=A0A1S2P8E2_9ACTN) HSP 1 Score: 84.7 bits (208), Expect = 1.100e-16 Identity = 57/170 (33.53%), Postives = 84/170 (49.41%), Query Frame = 2
Query: 2 IVSAGAGMDTRGLRLRASGDTKVFEVDQALMLRVKSALFT*AAAAADEVAAAVAGFRERRDGGVGQGRIVPVEADLSVEGWQGELLEAGFDPSQPSAWILEGLTMYLEEEDLVALLRVLASLSSPGSAFCATCVSAESVE--RAQNSADPLMS---RWKWGGDNPQAFFE 496
IV A AGMD+R RL G + FEVD+ +L K AD + RR V DL+ + W+ +L++AG+DPS PS W++EGL Y+ E + LL +A++S+PGS A V+A ++ Q D + W +G D P+A F+
Sbjct: 93 IVLAPAGMDSRAYRLNWPGHIRYFEVDRPAVLEFK----------ADRLQDVTPQVARRR-----------VAVDLTSDDWEKQLVDAGYDPSLPSTWLIEGLLHYIPEPGVRRLLERVAAISAPGSRIAADLVNAAALTLPHVQGQLDIFKAWGCPWVFGSDEPEALFD 241 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10183.215.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10183.215.1 >prot_Ecto-sp9_F_contig10183.215.1 ID=prot_Ecto-sp9_F_contig10183.215.1|Name=mRNA_Ecto-sp9_F_contig10183.215.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=108bp DRVCGGGHGHEGATTQGFGGHQGVRGGPSAHASRQERPFHVGGGGGRRSSback to top mRNA from alignment at Ecto-sp9_F_contig10183:265..2710+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10183.215.1 ID=mRNA_Ecto-sp9_F_contig10183.215.1|Name=mRNA_Ecto-sp9_F_contig10183.215.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2446bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10183:265..2710+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10183:265..2710+ >mRNA_Ecto-sp9_F_contig10183.215.1 ID=mRNA_Ecto-sp9_F_contig10183.215.1|Name=mRNA_Ecto-sp9_F_contig10183.215.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10183:265..2710+ (Ectocarpus species9 EcSCA_722f female)back to top |