mRNA_Ecto-sp9_F_contig10181.214.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10181.214.1 vs.
Match: DNA-directed (RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI81_9PHAE) HSP 1 Score: 281 bits (720), Expect = 4.850e-86 Identity = 138/151 (91.39%), Postives = 142/151 (94.04%), Query Frame = 2
Query: 2 VVLFNRQPSLHKMSIMSHRAKIMPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASQARRRY------LMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDRETFCKVASYMGDAGEQVDMPPPAIMKPVALWTGKQVL 436
VVLFNRQPSLHKMSIMSHRAKIMPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEA+QA RRY LMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFD ETFC+VASYMGDAGEQVD+PPPAIMKPVALWTGKQ +
Sbjct: 520 VVLFNRQPSLHKMSIMSHRAKIMPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEAAQASRRYVASPSRLMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDFETFCRVASYMGDAGEQVDVPPPAIMKPVALWTGKQAM 670
BLAST of mRNA_Ecto-sp9_F_contig10181.214.1 vs.
Match: DNA-directed (RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU80_ECTSI) HSP 1 Score: 277 bits (708), Expect = 1.720e-83 Identity = 135/145 (93.10%), Postives = 137/145 (94.48%), Query Frame = 2
Query: 2 VVLFNRQPSLHKMSIMSHRAKIMPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASQARRRYLMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDRETFCKVASYMGDAGEQVDMPPPAIMKPVALWTGKQVL 436
VVLFNRQPSLHKMSIMSHRAKIMPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASQ LMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFD ETFCKVASYMGDAGE VD+PPPAIMKPVALWTGKQ +
Sbjct: 511 VVLFNRQPSLHKMSIMSHRAKIMPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASQ-----LMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDHETFCKVASYMGDAGEHVDIPPPAIMKPVALWTGKQAM 650
BLAST of mRNA_Ecto-sp9_F_contig10181.214.1 vs.
Match: DNA-directed (RNA polymerase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YVR8_NANGC) HSP 1 Score: 238 bits (606), Expect = 2.010e-73 Identity = 109/154 (70.78%), Postives = 129/154 (83.77%), Query Frame = 2
Query: 2 VVLFNRQPSLHKMSIMSHRAKIMPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASQARRRYLMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDRETFCKVASYMGDAGEQVDMPPPAIMKPVALWTGKQVLVFVLVRGHR 463
VVLFNRQPSLHK+SIM+HR K+MPWRTFRFNECVC+PYNADFDGDEMNMHLPQTEEARAEA+ LM V NLVTPRNGEP+VAATQDF+T AYL+TQ+D+F RE FC++A+Y+GDA E +D+PPP+I+ P LWTGKQV ++ HR
Sbjct: 150 VVLFNRQPSLHKLSIMAHRVKVMPWRTFRFNECVCAPYNADFDGDEMNMHLPQTEEARAEAAT-----LMGVTSNLVTPRNGEPMVAATQDFITGAYLLTQKDVFLTREAFCRLAAYLGDAAEHIDLPPPSIVWPHQLWTGKQVFSLLIKASHR 298
BLAST of mRNA_Ecto-sp9_F_contig10181.214.1 vs.
Match: DNA-directed (RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEF0_9STRA) HSP 1 Score: 246 bits (627), Expect = 1.480e-72 Identity = 117/143 (81.82%), Postives = 131/143 (91.61%), Query Frame = 2
Query: 2 VVLFNRQPSLHKMSIMSHRAKIMPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASQARRRYLMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDRETFCKVASYMGDAGEQVDMPPPAIMKPVALWTGKQ 430
VVLFNRQPSLH+MSIM+HRAKIMPWRTFRFNECVC+PYNADFDGDEMNMHLPQTEEARAEA+ LMAV NLVTP+NGEPLVAATQDFLTA+YLITQ +IFFD+E FC++A+YMGDAGE++DMP PAI+ PVALWTGKQ
Sbjct: 479 VVLFNRQPSLHRMSIMAHRAKIMPWRTFRFNECVCNPYNADFDGDEMNMHLPQTEEARAEAAT-----LMAVVNNLVTPKNGEPLVAATQDFLTASYLITQNEIFFDKEEFCEIATYMGDAGERIDMPIPAIVAPVALWTGKQ 616
BLAST of mRNA_Ecto-sp9_F_contig10181.214.1 vs.
Match: DNA-directed (RNA polymerase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ELV8_9STRA) HSP 1 Score: 226 bits (576), Expect = 2.320e-71 Identity = 109/154 (70.78%), Postives = 130/154 (84.42%), Query Frame = 2
Query: 2 VVLFNRQPSLHKMSIMSHRAKIMPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASQARRRYLMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDRETFCKVASYMGDAGEQVDMPPPAIMKPVALWTGKQVLVFVLVRGHR 463
+VLFNRQPSLHKMSIMSHRAK++ WRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEA+ LM VP NL+T RNGEPLVAATQDFLTA+YL+TQ++IFF+RE FC+V + MGD + +++P AI+ P+ LWTGKQ+ +LVR +R
Sbjct: 82 IVLFNRQPSLHKMSIMSHRAKVLQWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEAAT-----LMCVPNNLITSRNGEPLVAATQDFLTASYLLTQKNIFFNREQFCQVLTLMGDGIDDIELPEAAIVCPIRLWTGKQIFS-LLVRPNR 229
BLAST of mRNA_Ecto-sp9_F_contig10181.214.1 vs.
Match: DNA-directed (RNA polymerase subunit (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSJ8_9STRA) HSP 1 Score: 234 bits (597), Expect = 6.120e-71 Identity = 113/154 (73.38%), Postives = 132/154 (85.71%), Query Frame = 2
Query: 2 VVLFNRQPSLHKMSIMSHRAKIMPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASQARRRYLMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDRETFCKVASYMGDAGEQVDMPPPAIMKPVALWTGKQVLVFVLVRGHR 463
VVLFNRQPSLHK+SIM+HR K+M WRTFRFNECVC+PYNADFDGDEMNMHLPQTEEARAEA+ LMAVP NLVT RNGEPLVAATQDFLT+AYL+TQ+++FF RE FC++ + +GD EQVD+PPPAI KPV LWTGKQ+ +LVR ++
Sbjct: 463 VVLFNRQPSLHKLSIMAHRVKVMQWRTFRFNECVCAPYNADFDGDEMNMHLPQTEEARAEAA-----ILMAVPNNLVTCRNGEPLVAATQDFLTSAYLLTQKNVFFTREHFCRLVAMIGDGDEQVDVPPPAIFKPVRLWTGKQIFG-LLVRPNK 610
BLAST of mRNA_Ecto-sp9_F_contig10181.214.1 vs.
Match: DNA-directed (RNA polymerase subunit (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKU7_9STRA) HSP 1 Score: 233 bits (594), Expect = 1.750e-70 Identity = 110/144 (76.39%), Postives = 124/144 (86.11%), Query Frame = 2
Query: 2 VVLFNRQPSLHKMSIMSHRAKIMPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASQARRRYLMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDRETFCKVASYMGDAGEQVDMPPPAIMKPVALWTGKQV 433
VVLFNRQPSLHK+SIMSHR K+M WRTFRFN CVC+PYNADFDGDEMNMHLPQTEEARAEAS LM VP+NLVTPRNGEPLVAA+QDFL+AAYL+TQRD+F+ FC ++SY GDA EQ+D+P PAI KPV LWTGKQ+
Sbjct: 484 VVLFNRQPSLHKLSIMSHRVKVMEWRTFRFNICVCAPYNADFDGDEMNMHLPQTEEARAEAS-----LLMGVPHNLVTPRNGEPLVAASQDFLSAAYLLTQRDVFYSYAMFCTLSSYFGDADEQIDVPTPAIFKPVPLWTGKQL 622
BLAST of mRNA_Ecto-sp9_F_contig10181.214.1 vs.
Match: DNA-directed (RNA polymerase subunit n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBK8_9STRA) HSP 1 Score: 239 bits (611), Expect = 2.130e-70 Identity = 109/154 (70.78%), Postives = 130/154 (84.42%), Query Frame = 2
Query: 2 VVLFNRQPSLHKMSIMSHRAKIMPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASQARRRYLMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDRETFCKVASYMGDAGEQVDMPPPAIMKPVALWTGKQVLVFVLVRGHR 463
VVLFNRQPSLHK+SIM+HR K+MPWRTFRFNECVC+PYNADFDGDEMNMHLPQTEEARAEA+ LM V NLVTPRNGEP+VAATQDF+T AYL+TQ+D+F RE FC++A+Y+GDA E +D+PPP+I++P LWTGKQV ++ HR
Sbjct: 461 VVLFNRQPSLHKLSIMAHRVKVMPWRTFRFNECVCAPYNADFDGDEMNMHLPQTEEARAEAAT-----LMGVTSNLVTPRNGEPMVAATQDFITGAYLLTQKDVFLTREAFCRLAAYLGDAAEHIDLPPPSIVRPHQLWTGKQVFSLLIKASHR 609
BLAST of mRNA_Ecto-sp9_F_contig10181.214.1 vs.
Match: DNA-directed (RNA polymerase subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVN3_AURAN) HSP 1 Score: 239 bits (609), Expect = 3.840e-70 Identity = 111/149 (74.50%), Postives = 130/149 (87.25%), Query Frame = 2
Query: 2 VVLFNRQPSLHKMSIMSHRAKIMPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASQARRRYLMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDRETFCKVASYMGDAGEQVDMPPPAIMKPVALWTGKQVLVFVL 448
VVLFNRQPSLHK+SIMSH K+MPWRTFRFNECVC+PYNADFDGDEMNMHLPQTEEARAEAS LM V N+ TPRNGEPLVAATQDF+TA++L+TQRD+FFDR+ FC +A+Y+GDA E+VD+PPPAI+KPV LWTGKQ+ ++
Sbjct: 449 VVLFNRQPSLHKLSIMSHEVKVMPWRTFRFNECVCAPYNADFDGDEMNMHLPQTEEARAEASA-----LMNVATNICTPRNGEPLVAATQDFVTASFLVTQRDVFFDRDAFCALAAYVGDALERVDVPPPAILKPVRLWTGKQLFSLIV 592
BLAST of mRNA_Ecto-sp9_F_contig10181.214.1 vs.
Match: DNA-directed (RNA polymerase subunit (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WCJ9_9STRA) HSP 1 Score: 238 bits (607), Expect = 4.370e-70 Identity = 113/145 (77.93%), Postives = 126/145 (86.90%), Query Frame = 2
Query: 2 VVLFNRQPSLHKMSIMSHRAKIMPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASQARRRYLMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDRETFCKVASYMGDAGEQVDMPPPAIMKPVALWTGKQVL 436
VVLFNRQPSLHKMSIM+HR K+MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEAR EA LM V NL+TPRNGEPLVAATQDFLTAAYL+TQ++IFF+RE FC+V S M DAGE +++PPPAI+ PV LWTGKQV+
Sbjct: 474 VVLFNRQPSLHKMSIMAHRVKVMPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARTEAIT-----LMGVEENLITPRNGEPLVAATQDFLTAAYLLTQKNIFFNREQFCQVISIMSDAGEHIELPPPAIVLPVRLWTGKQVI 613 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10181.214.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10181.214.1 >prot_Ecto-sp9_F_contig10181.214.1 ID=prot_Ecto-sp9_F_contig10181.214.1|Name=mRNA_Ecto-sp9_F_contig10181.214.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=155bp RGSVQPAAVPAQDVHHVPQGKDHAMADVPVQRVRLLAVQRRFRRGRDEHAback to top mRNA from alignment at Ecto-sp9_F_contig10181:2938..4196+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10181.214.1 ID=mRNA_Ecto-sp9_F_contig10181.214.1|Name=mRNA_Ecto-sp9_F_contig10181.214.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1259bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10181:2938..4196+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10181:2938..4196+ >mRNA_Ecto-sp9_F_contig10181.214.1 ID=mRNA_Ecto-sp9_F_contig10181.214.1|Name=mRNA_Ecto-sp9_F_contig10181.214.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=930bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10181:2938..4196+ (Ectocarpus species9 EcSCA_722f female)back to top |