mRNA_Ecto-sp9_F_contig10173.206.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10173.206.1
Unique NamemRNA_Ecto-sp9_F_contig10173.206.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10173.206.1 vs.
Match: SAP (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPG6_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 1.930e-60
Identity = 119/141 (84.40%), Postives = 125/141 (88.65%), Query Frame = 1 
Query:   31 MPLPSDSQRRRRRLRSWRGSVSG--ILIGLQLLARGADGFNPPPLQPSAAGLGVGLLSLAEQRRLPSTSTTRWQR------LYSKDSSTHNP-GSRGCHGSRRGARRVSRLGAAAAAADNVGPEHQQRNGYEMEERLEGRA 426
            MPLPSDSQRRRRRLRSWRGSVSG  ILIGLQLLARGADGFNPP L+PSAAGLGVGLLSLAEQRRLPSTSTTRWQR      LYS+DSSTHNP GSRGCHGS+RGARR SRL  AAA  DN GPE+Q+RNGY+MEERLEGRA
Sbjct:    1 MPLPSDSQRRRRRLRSWRGSVSGSGILIGLQLLARGADGFNPPLLEPSAAGLGVGLLSLAEQRRLPSTSTTRWQRTAPDNRLYSEDSSTHNPAGSRGCHGSKRGARRGSRL--AAADDDNGGPEYQRRNGYDMEERLEGRA 139
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10173.206.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
SAP1.930e-6084.40domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10173contigEcto-sp9_F_contig10173:2276..3439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.4
Seed ortholog evalue6.5e-53
Seed eggNOG ortholog2880.D7FPG6
EggNOG free text desc.NYN domain
EggNOG OGs2APVF@1,2RZHJ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size426
Cds size396
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10173.206.1prot_Ecto-sp9_F_contig10173.206.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10173 2306..3439 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928212.7090158-UTR-Ecto-sp9_F_contig10173:2275..23051622928212.7090158-UTR-Ecto-sp9_F_contig10173:2275..2305Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10173 2276..2305 +
1692277797.219949-UTR-Ecto-sp9_F_contig10173:2275..23051692277797.219949-UTR-Ecto-sp9_F_contig10173:2275..2305Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10173 2276..2305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928212.719784-CDS-Ecto-sp9_F_contig10173:2305..25231622928212.719784-CDS-Ecto-sp9_F_contig10173:2305..2523Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10173 2306..2523 +
1692277797.2291527-CDS-Ecto-sp9_F_contig10173:2305..25231692277797.2291527-CDS-Ecto-sp9_F_contig10173:2305..2523Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10173 2306..2523 +
1622928212.7316062-CDS-Ecto-sp9_F_contig10173:3261..34391622928212.7316062-CDS-Ecto-sp9_F_contig10173:3261..3439Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10173 3262..3439 +
1692277797.2366984-CDS-Ecto-sp9_F_contig10173:3261..34391692277797.2366984-CDS-Ecto-sp9_F_contig10173:3261..3439Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10173 3262..3439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10173.206.1

>prot_Ecto-sp9_F_contig10173.206.1 ID=prot_Ecto-sp9_F_contig10173.206.1|Name=mRNA_Ecto-sp9_F_contig10173.206.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=132bp
MPLPSDSQRRRRRLRSWRGSVSGILIGLQLLARGADGFNPPPLQPSAAGL
GVGLLSLAEQRRLPSTSTTRWQRLYSKDSSTHNPGSRGCHGSRRGARRVS
RLGAAAAAADNVGPEHQQRNGYEMEERLEGRA
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mRNA from alignment at Ecto-sp9_F_contig10173:2276..3439+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10173.206.1 ID=mRNA_Ecto-sp9_F_contig10173.206.1|Name=mRNA_Ecto-sp9_F_contig10173.206.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1164bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10173:2276..3439+ (Ectocarpus species9 EcSCA_722f female)
ACCAGAAACCATACACATGAAAACATCGGTATGCCGCTGCCGTCTGACAG
TCAGCGGCGTAGAAGACGGTTGCGGAGCTGGAGGGGATCCGTGTCTGGAA
TTTTGATTGGGTTGCAGCTATTGGCGCGCGGTGCTGATGGATTCAACCCA
CCGCCACTGCAACCCTCAGCAGCAGGGCTTGGCGTGGGGCTACTATCCCT
TGCCGAGCAGCGACGGTTACCGAGCACGAGTACGACGCGCTGGCAGAGGT
GAGGACACAGCAGCAGCGGGAACTCTAGACGTGGGGGGTTCTTCGGCGTA
TTCGGTGCACTGTTTTCTCTCCCGTACGTAGTTGGCACAACGGCAGGAAC
CTTGCAACGGGTGTCCATCATGTGTCGGCTGTTCCGGCACACTCAGCAAC
GTGTCCTACGCTGCTGTACCCGTCCGCGTAGTGGTGGTGTGCTGCTAATG
ACTGACAGCGGCTGTTGGCATATCGTATCGTAGCCTGTCGTCGATCGAAC
CTTGCACGATTGGTGTGCACGGTGGAATTGGCCATCGGTAAGGGAGTAAG
GGACCATACCATATGTCGTGCGGTATGATGAGCAAGTGTAGTCGAAAATC
GAGACCTCAAAACGGTCGGTTCACACGTGCGGACCGCGCTTGGTGTACCT
ACTTGTACGCGAACAGCACCGAGATGCTCGTATATGGCAGGTAAAACGAG
CAGCAGCGACACACTGACCCTCCAATCACATTCCACACACGGCAGCCGTG
CGGTCTTCGCTAGTAGTCTACAACCAACGTTATGGACGCGTTTTTGAGGT
TCAGTAGAGGCGATCTCACCCGTTAACTGGTAGATTTCTCGTGTAAGTAA
ACCAGTTACGGCCAAGTGGTATAGACATTTTTCCTACAGTAGATGCGTGT
TACTCATTTCTCAATGGCTCCCCCGGCCCTCTCCCGCCCGTGGCCTCCAT
GCCCTTCCCGCCCCGCACCACCGCCCCCGACAAAAGGCTGTACTCGAAGG
ACTCCTCCACACACAACCCTGGCAGTAGAGGATGCCACGGCTCAAGACGA
GGGGCGAGAAGAGTAAGCCGGCTCGGCGCCGCCGCTGCCGCCGCCGACAA
CGTCGGTCCGGAGCACCAGCAGCGTAACGGTTACGAGATGGAGGAGAGGT
TGGAGGGAAGAGCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10173:2276..3439+

>mRNA_Ecto-sp9_F_contig10173.206.1 ID=mRNA_Ecto-sp9_F_contig10173.206.1|Name=mRNA_Ecto-sp9_F_contig10173.206.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=792bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10173:2276..3439+ (Ectocarpus species9 EcSCA_722f female)
ATGCCGCTGCCGTCTGACAGTCAGCGGCGTAGAAGACGGTTGCGGAGCTG
GAGGGGATCCGTGTCTGGAATTTTGATTGGGTTGCAGCTATTGGCGCGCG
GTGCTGATGGATTCAACCCACCGCCACTGCAACCCTCAGCAGCAGGGCTT
GGCGTGGGGCTACTATCCCTTGCCGAGCAGCGACGGTTACCGAGCACGAG
TACGACGCGCTGGCAGAGATGCCGCTGCCGTCTGACAGTCAGCGGCGTAG
AAGACGGTTGCGGAGCTGGAGGGGATCCGTGTCTGGAATTTTGATTGGGT
TGCAGCTATTGGCGCGCGGTGCTGATGGATTCAACCCACCGCCACTGCAA
CCCTCAGCAGCAGGGCTTGGCGTGGGGCTACTATCCCTTGCCGAGCAGCG
ACGGTTACCGAGCACGAGTACGACGCGCTGGCAGAGGCTGTACTCGAAGG
ACTCCTCCACACACAACCCTGGCAGTAGAGGATGCCACGGCTCAAGACGA
GGGGCGAGAAGAGTAAGCCGGCTCGGCGCCGCCGCTGCCGCCGCCGACAA
CGTCGGTCCGGAGCACCAGCAGCGTAACGGTTACGAGATGGAGGAGAGGT
TGGAGGGAAGAGCCGCTGTACTCGAAGGACTCCTCCACACACAACCCTGG
CAGTAGAGGATGCCACGGCTCAAGACGAGGGGCGAGAAGAGTAAGCCGGC
TCGGCGCCGCCGCTGCCGCCGCCGACAACGTCGGTCCGGAGCACCAGCAG
CGTAACGGTTACGAGATGGAGGAGAGGTTGGAGGGAAGAGCC
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