mRNA_Ecto-sp9_F_contig10171.205.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10171.205.1
Unique NamemRNA_Ecto-sp9_F_contig10171.205.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10171.205.1 vs.
Match: WD-40 (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB83_ECTSI)

HSP 1 Score: 400 bits (1029), Expect = 2.280e-125
Identity = 210/213 (98.59%), Postives = 212/213 (99.53%), Query Frame = 1 
Query:    1 PGYFSEFLSARICRHPIFTDMRFWQHVLSEAVQAKTEKIAKDRHSIASARRAGAGGHAKDEGGGGSLLSSPGSPDEAVAASNLLGKNPGLKKLDAEANLAVEFKDPALASEIVCRQVKVFLYEMASIGMRARTAQRYVEAVSLQYKLQPSARNRLSETVQLVWGAVASMAGPGSPPFGSELTPEMSVAQAGWSQAKIDADADADLAAVHSEQP 639
            PGYFSEFLSARICRHPIFTDMRFWQHVLSEAVQAKTEKIAKDRHSIASARRAGAGGHAKDEGGGGSLLSSPGSPDEAVAASNLLGKNPGLKKLDAEANLAVEFKDPALASEIVCRQVKVFLYEMASIGMRA+TAQRYVEAVSLQYKLQPSARNRLSETV+LVWGAVASMAGPGSPPFGSELTPEMSVAQAGWSQAKIDADADADLAAVHS QP
Sbjct: 1838 PGYFSEFLSARICRHPIFTDMRFWQHVLSEAVQAKTEKIAKDRHSIASARRAGAGGHAKDEGGGGSLLSSPGSPDEAVAASNLLGKNPGLKKLDAEANLAVEFKDPALASEIVCRQVKVFLYEMASIGMRAKTAQRYVEAVSLQYKLQPSARNRLSETVRLVWGAVASMAGPGSPPFGSELTPEMSVAQAGWSQAKIDADADADLAAVHSGQP 2050
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10171.205.1 vs.
Match: UDENN (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB05_9PHAE)

HSP 1 Score: 398 bits (1022), Expect = 1.990e-124
Identity = 209/213 (98.12%), Postives = 210/213 (98.59%), Query Frame = 1 
Query:    1 PGYFSEFLSARICRHPIFTDMRFWQHVLSEAVQAKTEKIAKDRHSIASARRAGAGGHAKDEGGGGSLLSSPGSPDEAVAASNLLGKNPGLKKLDAEANLAVEFKDPALASEIVCRQVKVFLYEMASIGMRARTAQRYVEAVSLQYKLQPSARNRLSETVQLVWGAVASMAGPGSPPFGSELTPEMSVAQAGWSQAKIDADADADLAAVHSEQP 639
            PGYFSEFLSARICRHPIFTDMRFWQHVLSEAVQAKTEKIAKDRHSIASARRAGAGGHAKDEGGGGSLLSSPGSPDEAVAASNLLGKNPG KKLDAEANLAVEFKDPALASEIVCRQVKVFLYEMASIGMRARTAQRYVEAVSLQYKLQPSARNRLSETV+LVWGAVASMAGPGSPPFGSELTPEMSVAQAGWSQAKIDADADADLAA HS QP
Sbjct: 1892 PGYFSEFLSARICRHPIFTDMRFWQHVLSEAVQAKTEKIAKDRHSIASARRAGAGGHAKDEGGGGSLLSSPGSPDEAVAASNLLGKNPGRKKLDAEANLAVEFKDPALASEIVCRQVKVFLYEMASIGMRARTAQRYVEAVSLQYKLQPSARNRLSETVRLVWGAVASMAGPGSPPFGSELTPEMSVAQAGWSQAKIDADADADLAATHSGQP 2104
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10171.205.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
WD-402.280e-12598.59repeat protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
UDENN1.990e-12498.12domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10171contigEcto-sp9_F_contig10171:351..4536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score409.8
Seed ortholog evalue8e-112
Seed eggNOG ortholog2880.D8LB83
Preferred nameSCD1
KEGG koko:K03361,ko:K20164
KEGG Pathwayko04111,ko04120,map04111,map04120
KEGG ModuleM00407
GOsGO:0000151,GO:0000278,GO:0000281,GO:0000819,GO:0000910,GO:0000911,GO:0001568,GO:0001570,GO:0001932,GO:0001934,GO:0001944,GO:0002682,GO:0002683,GO:0002761,GO:0002762,GO:0003674,GO:0003700,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005886,GO:0006275,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007154,GO:0007165,GO:0007166,GO:0007176,GO:0007219,GO:0007275,GO:0008150,GO:0008152,GO:0008156,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009791,GO:0009825,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010235,GO:0010374,GO:0010440,GO:0010468,GO:0010469,GO:0010498,GO:0010506,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010594,GO:0010604,GO:0010605,GO:0010632,GO:0010638,GO:0010646,GO:0010647,GO:0010721,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0010948,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0022402,GO:0022603,GO:0023051,GO:0023052,GO:0023056,GO:0030135,GO:0030136,GO:0030154,GO:0030162,GO:0030163,GO:0030234,GO:0030323,GO:0030324,GO:0030332,GO:0030334,GO:0030674,GO:0031146,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031461,GO:0031625,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032446,GO:0032501,GO:0032502,GO:0032506,GO:0032875,GO:0032876,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033157,GO:0033554,GO:0033674,GO:0034644,GO:0035239,GO:0035295,GO:0036211,GO:0040007,GO:0040012,GO:0042058,GO:0042176,GO:0042325,GO:0042327,GO:0042802,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043408,GO:0043410,GO:0043412,GO:0043523,GO:0043525,GO:0043535,GO:0043549,GO:0043632,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045309,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045670,GO:0045671,GO:0045732,GO:0045741,GO:0045742,GO:0045765,GO:0045786,GO:0045824,GO:0045859,GO:0045860,GO:0045862,GO:0045934,GO:0045937,GO:0048471,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050730,GO:0050731,GO:0050776,GO:0050777,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050816,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051053,GO:0051093,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051219,GO:0051222,GO:0051223,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051270,GO:0051276,GO:0051301,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051716,GO:0051726,GO:0055106,GO:0060090,GO:0060255,GO:0060284,GO:0060341,GO:0060541,GO:0061097,GO:0061098,GO:0061136,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070372,GO:0070374,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071944,GO:0072358,GO:0072359,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090049,GO:0090087,GO:0090316,GO:0090329,GO:0090558,GO:0097027,GO:0097708,GO:0098772,GO:0098813,GO:0104004,GO:0140096,GO:0140110,GO:1900407,GO:1900409,GO:1901184,GO:1901186,GO:1901214,GO:1901216,GO:1901342,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1902105,GO:1902106,GO:1902175,GO:1902177,GO:1902410,GO:1902494,GO:1902531,GO:1902533,GO:1902882,GO:1902884,GO:1903010,GO:1903011,GO:1903025,GO:1903026,GO:1903047,GO:1903050,GO:1903052,GO:1903146,GO:1903201,GO:1903203,GO:1903209,GO:1903214,GO:1903223,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903376,GO:1903378,GO:1903506,GO:1903533,GO:1903670,GO:1903706,GO:1903707,GO:1903747,GO:1903749,GO:1903827,GO:1903829,GO:1903955,GO:1904951,GO:1990234,GO:1990452,GO:2000026,GO:2000058,GO:2000060,GO:2000104,GO:2000112,GO:2000113,GO:2000145,GO:2000273,GO:2000677,GO:2000678,GO:2001141,GO:2001204,GO:2001205,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG0274@1,KOG0274@2759,KOG2127@1,KOG2127@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons6
Model size675
Cds size672
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10171.205.1prot_Ecto-sp9_F_contig10171.205.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10171 352..4536 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928212.5940034-CDS-Ecto-sp9_F_contig10171:351..4901622928212.5940034-CDS-Ecto-sp9_F_contig10171:351..490Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10171 352..490 -
1692277797.1703095-CDS-Ecto-sp9_F_contig10171:351..4901692277797.1703095-CDS-Ecto-sp9_F_contig10171:351..490Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10171 352..490 -
1622928212.6089516-CDS-Ecto-sp9_F_contig10171:1526..15911622928212.6089516-CDS-Ecto-sp9_F_contig10171:1526..1591Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10171 1527..1591 -
1692277797.180891-CDS-Ecto-sp9_F_contig10171:1526..15911692277797.180891-CDS-Ecto-sp9_F_contig10171:1526..1591Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10171 1527..1591 -
1622928212.6236222-CDS-Ecto-sp9_F_contig10171:2224..23441622928212.6236222-CDS-Ecto-sp9_F_contig10171:2224..2344Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10171 2225..2344 -
1692277797.1883662-CDS-Ecto-sp9_F_contig10171:2224..23441692277797.1883662-CDS-Ecto-sp9_F_contig10171:2224..2344Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10171 2225..2344 -
1622928212.641321-CDS-Ecto-sp9_F_contig10171:3242..33021622928212.641321-CDS-Ecto-sp9_F_contig10171:3242..3302Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10171 3243..3302 -
1692277797.196468-CDS-Ecto-sp9_F_contig10171:3242..33021692277797.196468-CDS-Ecto-sp9_F_contig10171:3242..3302Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10171 3243..3302 -
1622928212.6572764-CDS-Ecto-sp9_F_contig10171:3852..40261622928212.6572764-CDS-Ecto-sp9_F_contig10171:3852..4026Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10171 3853..4026 -
1692277797.2040846-CDS-Ecto-sp9_F_contig10171:3852..40261692277797.2040846-CDS-Ecto-sp9_F_contig10171:3852..4026Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10171 3853..4026 -
1622928212.670837-CDS-Ecto-sp9_F_contig10171:4422..45361622928212.670837-CDS-Ecto-sp9_F_contig10171:4422..4536Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10171 4423..4536 -
1692277797.2113535-CDS-Ecto-sp9_F_contig10171:4422..45361692277797.2113535-CDS-Ecto-sp9_F_contig10171:4422..4536Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10171 4423..4536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10171.205.1

>prot_Ecto-sp9_F_contig10171.205.1 ID=prot_Ecto-sp9_F_contig10171.205.1|Name=mRNA_Ecto-sp9_F_contig10171.205.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=224bp
PGYFSEFLSARICRHPIFTDMRFWQHVLSEAVQAKTEKIAKDRHSIASAR
RAGAGGHAKDEGGGGSLLSSPGSPDEAVAASNLLGKNPGLKKLDAEANLA
VEFKDPALASEIVCRQVKVFLYEMASIGMRARTAQRYVEAVSLQYKLQPS
ARNRLSETVQLVWGAVASMAGPGSPPFGSELTPEMSVAQAGWSQAKIDAD
ADADLAAVHSEQPPPPAAAAATSG
back to top

mRNA from alignment at Ecto-sp9_F_contig10171:351..4536-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10171.205.1 ID=mRNA_Ecto-sp9_F_contig10171.205.1|Name=mRNA_Ecto-sp9_F_contig10171.205.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4186bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10171:351..4536- (Ectocarpus species9 EcSCA_722f female)
CCGGGGTACTTCAGCGAGTTCCTGAGTGCTAGGATATGTCGGCACCCGAT
ATTCACGGACATGCGTTTCTGGCAGCACGTGCTAAGCGAAGCCGTACAGG
CTAAGACGGAAAAGGTGCGCAATATGTGTAGACACACCTCGTGGAAGCGT
TTTTTTTAATTCCTTCGTAGAATGTTCCATTTATTGCTTTCTGGAACGTT
CTGGTGCATCCCCGTGGAACTTTGGTTTGTTTGCTTCATGGAACGTTCTG
GTGCATCCCCGTAGAACTTTCCGTTGTTTCTCCATGGACCTGTCACATCC
CGTGGAACTTTCCGGTACTTGCTTCATGGAACGTTCCGTTACATCCCCGT
GGAACGTTCTGTTTAGATGTTACAGTGTAGAGGTGTTACTGAGTAGAGAT
CGGCTTGATTTTTCAATGCGAAGACGACAACAACAACAACAACAACAATC
TCAACTGAACAAACTCACCAACTTCAACGTCATGGCAATATACAAAAAAA
AAAAAAACAGATAGCCAAGGACCGTCACTCGATTGCCTCCGCGAGGCGAG
CCGGCGCTGGCGGACACGCCAAGGACGAAGGGGGCGGGGGCAGCTTGCTA
TCGTCCCCGGGTAGCCCCGACGAGGCGGTGGCGGCGTCGAACCTGCTCGG
CAAGAATCCGGGGCTGAAGAAGCTGGACGCGGAGGTGACACCGAGAGAGC
GATGGACGGGAAGAGGGAGAGAAAGGGGAACGGAGCAAATTGAGATGATG
TAGAGGAAGAGAGGAAGAGATAGAATGGGGTGGGAGTAAGAAAAAGACGA
AAGAGGCTTGATAGGCTGAGGCGTAGGGAACAGTCTCTGTGGTGCTTTTT
TTTTTTTTGACAGGTCCTCTCGATGTTTCTACGTGATTTGAGGGTTGAAA
TCTACTTCAAGTAAATTTTGGAGGTCACCGCTGTGCTGCTAAGTATGTAC
GCTGCTATTGTGCGCTTTTTGTGCAGGATTTGTTCGGCTTAAGTTGAAAC
CGGTCTGTTGCTTTCATTGATGTCGTTGCTGCTGCTGCTGCTGCCGCTAC
TGCTGGTGGTGGTGGTGCTGCCGCTGCAGTTGTTGCTATTGTTCCTGCGA
TATATGATTGCTGATGCCGCTGCTGCTGTTGTTGTTGCTGTTCCTGCGAT
TGCTGCTGTTGGGTGGCGTGTCCGTGCTCGTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTGTGACGTCACTCCAGGCCAACCTTGCTGTGG
AGTTCAAGGACCCAGCTTTGGCATCGGAGATCGTCTGCCGACAGGTGCGT
GAGCCTACAGCATTACGAGGCAGAAAAAACAAACATGTTAATATGATACT
ACCAACCATGATACGCGTGTATCTACCATGGTACAACATAACCGCCGTGT
CATGGAACAGACGAACGGCCTCCCCGGCCGGACGACGCCTCGCACCTCTA
GGGTTTGTAAGCATGCGGCGTTTTGTTTTTTCAAGGTTTTCCGTCGTTTC
ACTCGGACCTCGCGTACCTTTTCTCATGGAGTTCATCCCATCTGTTGAAT
CTCTTTTTTTTTGGCGCGCAAGTAGGTGGGTTGTTTTTTTTCCGTCGCCA
CTCTGGGACAATAGTCCTCTCGGGCTACGCCTGCGGTGGCTGAGGTTGCA
TCGCGTCCCAATTCCCGGGGGCTCTTTCAACTACAGGGCGACCGGCCTTG
TGGATACGGCCATATACTACTACTCTTGTCGTGTTGTCCGTACGAAACCT
GATTTTTTTTATCGCCGTTGTCTTTTTTTGTGAATGTTCGTGGCTGTTTG
TCCTCTTGTCCTTTGTGGCTTCTTTCCGCGCGCATTGCGTACAACACCCC
GCATGTGTGAAGAGGGAATAGAATCGTCCTCGACAGACAGACGTTGGGAG
GTTGAATATACCCTTCATAAAGGGGATCTCCCTCCACACATGTGTTATTT
GATTAAGTGTCATCAAGGCGTCATGCAAGATGAAAGTAAAGAAGGGTATT
GATGTGAATCAGCTGTCATCAGTGACGTTTCTCACATTCGAACAGCTCGC
ACAGCTGACGTATTTTTGGCTCGAAGAGCCCAGCAAACCGTAACGAACCA
CAAGAGAAAAATTTACAACTCTGTACAAATAACCCACATTATTGTTTGCA
TTTGATTTGTACAATTTTCTTTTTTTCTTTGTGTATGAGCAGGTGAAGGT
TTTCCTGTACGAGATGGCGTCTATCGGCATGCGAGCGAGAACGGCGCAGC
GCTACGTCGAGGCGGTCTCCCTCCAGTACAAGCTTCAGCCGTCGGCCAGA
AACCGCTTGTCGGTGAGTTATTGTTGCTTTTCTTATGTAGGATTGGTGTT
TTTTTCTCTCTTGTTCTGTTTCTCCGCAGCCCGCATGGTAGTTTTTCTTT
TAATGGCGCAAGATCTATCTTGTACGTACGTAAGATGAGCATTTTTTTAT
TCTGTTGCTAAATGTATCATCTCGCGACGGTCCCAAACGCATGCTTGGAG
GCTTTGAGTAGTCATGGGTCGAAGATTACGGTGCCAATGCGTACCGTGAT
ACTGTAAGAACTCGATATTGTTTGGTTCATGAGCATATAAAAGCCATGAA
CAGTTGACGATTGGAAAGGAAGGAAAGGATTGCTTCCCCTCTTGCGCCGA
TCCCTTTTGAAGCCAAGCACCGCAGAGTGAATTCTTATCCTCGTGCGGGT
TGTCCAGTCTGCTGCGCCAAAAAATGCACCTACATCGGTATGTGAAGGCG
TAGCCCAAATGCGTCGAGAAAGAGGAACGATGGAGGGATTTCCTCCACAG
CAGTAGCAGCACACAAGCTTCAGCCGAGCCTGCCTGCGATGAGAGGCTAT
CTGTCGGCGGCTGGGGCTTACACAAGCTTTATCCCCGACATGTCAACCAA
ACCCACTCCGCTGCCGCTGCAACTATTCATGGTGGTCGTGAACAGGAGAC
GGTGCAACTGGTGTGGGGCGCCGTGGCAAGCATGGCGGGACCCGGGTCTC
CTCCTTTCGGGTATGTGCATTCATGTCGTGGTATACATTGTAGCCATTTT
ATTTTGTCAGTATTACCCAACGAATCCATCTCTATTTTTGTTTTGTTTTC
GTTTACTCGGTGGGTTGAGATTGCGTGCACTTGCCCGTGCGTGCACTTGC
CCGGAAATCGTAATTATTTCTCTCGCAGTTTGTGTAGCCGAGTTAAATTT
GGCTCTGGTTTTCTGATACGATGGTTGGGAGTGCATGGCACACACGTGAA
ATTGGCTGAAGATTGCCCGCGTGCAGGCAAGAAGACCTAAAGAAGGAAGA
GGGACGGAAAAACAAAAACAAAAGAAGAGGCCACATCAGTATCAGCCCCC
CAGCAAACACGACAACAGGGATGATGATGATGCACAGCCTCGCAAACGGT
CTGGTTTTGTACCCTGCTTCTACTCCCGCTCTCGCTCTGTGTCTCTCTGC
GTCTACTTGTCGGTCCCAGCCTGACTCTCTGTATCTCTCTGTCTCTCTCT
GGCCTCTGATTCTTGTGACACCATATGTATGCATAGATTCGTTGAGCGGC
GGGCGGGGAATAAAAAGGATCGTGACCGTGAAAAAAAAAAAAAGCAGGCG
GGCCTTTCTTGTCATATCCATATCGTGGCGGCCGTGAGACGGACGCTCCA
CTTGGACTGGCGTTCAATAACCCAAAAAACATTTAATTCAAATGAAAACA
CTATGTATTAATGTTTTGCTTGGTTGCTTCAAAACATATATTTTTTGTGT
TTTTTGTTGCGTGAAAGAAATGAATGATCATGCGTAACCCCTCCCCTGCC
CTATCGGCGAAACCCGGAATCATCGTCCCGTACCAGCTCTGCACGGATAC
GGTACGGTACGAGTGGTCTCGAACGGGAGGAGCATTCTTACTACAACCCT
CCGGCTCCACGGTCGAGAATCTACTGTCAACGCCCCTTTTACACCCCTAG
CTTGCACTTCCCCGTCACCCCCGTGCTCTTGTCGAAATCCCCAACTCACC
CTATTCCCCGTCGTCGTCCCCCGTGCGGCTCTTGGTCGTCCGACAGGTCC
GAGCTCACCCCGGAGATGTCCGTCGCCCAGGCGGGCTGGTCGCAGGCCAA
GATCGACGCAGACGCCGACGCCGACCTGGCCGCCGTCCACTCCGAACAAC
CACCACCACCCGCCGCCGCCGCCGCCACTAGCGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10171:351..4536-

>mRNA_Ecto-sp9_F_contig10171.205.1 ID=mRNA_Ecto-sp9_F_contig10171.205.1|Name=mRNA_Ecto-sp9_F_contig10171.205.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1344bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10171:351..4536- (Ectocarpus species9 EcSCA_722f female)
CCGGGGTACTTCAGCGAGTTCCTGAGTGCTAGGATATGTCGGCACCCGAT
ATTCACGGACATGCGTTTCTGGCAGCACGTGCTAAGCGAAGCCGTACAGG
CTAAGACGGAAAAGCCGGGGTACTTCAGCGAGTTCCTGAGTGCTAGGATA
TGTCGGCACCCGATATTCACGGACATGCGTTTCTGGCAGCACGTGCTAAG
CGAAGCCGTACAGGCTAAGACGGAAAAGATAGCCAAGGACCGTCACTCGA
TTGCCTCCGCGAGGCGAGCCGGCGCTGGCGGACACGCCAAGGACGAAGGG
GGCGGGGGCAGCTTGCTATCGTCCCCGGGTAGCCCCGACGAGGCGGTGGC
GGCGTCGAACCTGCTCGGCAAGAATCCGGGGCTGAAGAAGCTGGACGCGG
AGATAGCCAAGGACCGTCACTCGATTGCCTCCGCGAGGCGAGCCGGCGCT
GGCGGACACGCCAAGGACGAAGGGGGCGGGGGCAGCTTGCTATCGTCCCC
GGGTAGCCCCGACGAGGCGGTGGCGGCGTCGAACCTGCTCGGCAAGAATC
CGGGGCTGAAGAAGCTGGACGCGGAGGCCAACCTTGCTGTGGAGTTCAAG
GACCCAGCTTTGGCATCGGAGATCGTCTGCCGACAGGCCAACCTTGCTGT
GGAGTTCAAGGACCCAGCTTTGGCATCGGAGATCGTCTGCCGACAGGTGA
AGGTTTTCCTGTACGAGATGGCGTCTATCGGCATGCGAGCGAGAACGGCG
CAGCGCTACGTCGAGGCGGTCTCCCTCCAGTACAAGCTTCAGCCGTCGGC
CAGAAACCGCTTGTCGGTGAAGGTTTTCCTGTACGAGATGGCGTCTATCG
GCATGCGAGCGAGAACGGCGCAGCGCTACGTCGAGGCGGTCTCCCTCCAG
TACAAGCTTCAGCCGTCGGCCAGAAACCGCTTGTCGGAGACGGTGCAACT
GGTGTGGGGCGCCGTGGCAAGCATGGCGGGACCCGGGTCTCCTCCTTTCG
GGAGACGGTGCAACTGGTGTGGGGCGCCGTGGCAAGCATGGCGGGACCCG
GGTCTCCTCCTTTCGGGTCCGAGCTCACCCCGGAGATGTCCGTCGCCCAG
GCGGGCTGGTCGCAGGCCAAGATCGACGCAGACGCCGACGCCGACCTGGC
CGCCGTCCACTCCGAACAACCACCACCACCCGCCGCCGCCGCCGCCACTA
GCGGGGTCCGAGCTCACCCCGGAGATGTCCGTCGCCCAGGCGGGCTGGTC
GCAGGCCAAGATCGACGCAGACGCCGACGCCGACCTGGCCGCCGTCCACT
CCGAACAACCACCACCACCCGCCGCCGCCGCCGCCACTAGCGGG
back to top