mRNA_Ecto-sp9_F_contig1017.202.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1017.202.1 vs.
Match: ABC (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHF0_9PHAE) HSP 1 Score: 367 bits (941), Expect = 1.210e-124 Identity = 190/202 (94.06%), Postives = 194/202 (96.04%), Query Frame = 1
Query: 1 QDPLLFAGTVRENLDPSGEHPDTALWQALRSSRLADVDLDRDSGGGSDGAIGAGWGDSSTTKADSTVGTGGAVARGSVGGFRLDTELDGYGANMSSGQRQLLCIARALLRRSKIVCVDEATARMDVRTAKLVDAAMAEAFRDATVLTVAHRLPPVLESCDKVAVMSEGRVVEQGRPRDLAADTTSRFSALLRAQDGGGNVAA 606
QDPLLFAGTVRENLDPSGEHPDTALWQALRSSRLAD DLDRDS GG D ++GAGWGDSS TK DST+G+GGAVARGS GGFRLDTELDGYG NMSSGQRQLLCIARALLRRSKIVCVDEATARMDVRTAKLVDAAMAEAFRDATVLTVAHRLPPVLESCDKVAVMSEGRVVEQGRPRDLAADTTSRFSALLRAQDGGGNVAA
Sbjct: 66 QDPLLFAGTVRENLDPSGEHPDTALWQALRSSRLADGDLDRDSAGGGDDSVGAGWGDSSATKTDSTIGSGGAVARGSGGGFRLDTELDGYGVNMSSGQRQLLCIARALLRRSKIVCVDEATARMDVRTAKLVDAAMAEAFRDATVLTVAHRLPPVLESCDKVAVMSEGRVVEQGRPRDLAADTTSRFSALLRAQDGGGNVAA 267
BLAST of mRNA_Ecto-sp9_F_contig1017.202.1 vs.
Match: ABC (multidrug transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP7_ECTSI) HSP 1 Score: 353 bits (907), Expect = 1.540e-119 Identity = 184/187 (98.40%), Postives = 186/187 (99.47%), Query Frame = 1
Query: 1 QDPLLFAGTVRENLDPSGEHPDTALWQALRSSRLADVDLDRDSGGGSDGAIGAGWGDSSTTKADSTVGTGGAVARGSVGGFRLDTELDGYGANMSSGQRQLLCIARALLRRSKIVCVDEATARMDVRTAKLVDAAMAEAFRDATVLTVAHRLPPVLESCDKVAVMSEGRVVEQGRPRDLAADTTSRF 561
QDPLLFAGTVRENLDPSGEHPDTALWQALRSSRLADVDLDRDSGGGSDGAIGAGWGD STTKADSTVG+GGAVARGSVGGFRLDTELDGYGANMSSGQRQLLCIARALLRRSKIVCVDEATARMDVRTAKLVDAAMAEAFRDATVLTVAHRLPPVLESCDKVAVMSEGRVVEQG+PRDLAADTTSRF
Sbjct: 75 QDPLLFAGTVRENLDPSGEHPDTALWQALRSSRLADVDLDRDSGGGSDGAIGAGWGDPSTTKADSTVGSGGAVARGSVGGFRLDTELDGYGANMSSGQRQLLCIARALLRRSKIVCVDEATARMDVRTAKLVDAAMAEAFRDATVLTVAHRLPPVLESCDKVAVMSEGRVVEQGKPRDLAADTTSRF 261
BLAST of mRNA_Ecto-sp9_F_contig1017.202.1 vs.
Match: ABC (transporter, putative n=1 Tax=Ixodes scapularis TaxID=6945 RepID=B7PAI6_IXOSC) HSP 1 Score: 135 bits (339), Expect = 7.680e-33 Identity = 85/192 (44.27%), Postives = 104/192 (54.17%), Query Frame = 1
Query: 1 QDPLLFAGTVRENLDPSGEHPDTALWQALRSSRLADVDLDRDSGGGSDGAIGAGWGDSSTTKADSTVGTGGAVARGSVGGFRLDTELDGYGANMSSGQRQLLCIARALLRRSKIVCVDEATARMDVRTAKLVDAAMAEAFRDATVLTVAHRLPPVLESCDKVAVMSEGRVVEQGRPRDLAADTTSRFSALLR 576
QDP LF GT+R NLDP+G+H LW AL S L DV G LD+E+ G N+S GQRQL+C+ARA+LRR+ IV +DEATA +D+RT LV + E + TVLTVAHRL VL S D+V VM +G+VVE G P DL DTTS F A+ R
Sbjct: 236 QDPFLFEGTLRFNLDPAGQHDTEELWWALDRSHLGDVFRK---------------------------------------GAGLDSEVAEGGLNLSMGQRQLVCLARAVLRRTNIVVLDEATASVDMRTDLLVQQTLREVMSECTVLTVAHRLNTVLAS-DRVVVMDQGKVVEVGTPTDLLDDTTSSFYAMAR 387
BLAST of mRNA_Ecto-sp9_F_contig1017.202.1 vs.
Match: multidrug (resistance-associated protein 1-like n=1 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001A9E6074) HSP 1 Score: 137 bits (344), Expect = 4.520e-32 Identity = 86/192 (44.79%), Postives = 105/192 (54.69%), Query Frame = 1
Query: 1 QDPLLFAGTVRENLDPSGEHPDTALWQALRSSRLADVDLDRDSGGGSDGAIGAGWGDSSTTKADSTVGTGGAVARGSVGGFRLDTELDGYGANMSSGQRQLLCIARALLRRSKIVCVDEATARMDVRTAKLVDAAMAEAFRDATVLTVAHRLPPVLESCDKVAVMSEGRVVEQGRPRDLAADTTSRFSALLR 576
QDP LF GT+R NLDP+G+H LW AL S L DV G LD+E+ G N+S GQRQL+C+ARA+LRR+KIV +DEATA +D+RT LV + E + TVLTVAHRL VL S D+V VM +G+VVE G P DL DTTS F A+ R
Sbjct: 1287 QDPFLFEGTLRFNLDPAGQHDTEELWWALDRSHLGDVFRK---------------------------------------GAGLDSEVAEGGLNLSMGQRQLVCLARAVLRRTKIVVLDEATASVDMRTDLLVQQTLREVMSECTVLTVAHRLNTVLAS-DRVVVMDQGKVVEVGTPTDLLDDTTSSFYAMAR 1438
BLAST of mRNA_Ecto-sp9_F_contig1017.202.1 vs.
Match: ABC (transporter domain-containing protein n=1 Tax=Gopherus agassizii TaxID=38772 RepID=A0A452H4Z9_9SAUR) HSP 1 Score: 131 bits (330), Expect = 4.630e-32 Identity = 79/193 (40.93%), Postives = 103/193 (53.37%), Query Frame = 1
Query: 1 QDPLLFAGTVRENLDPSGEHPDTALWQALRSSRLADVDLDRDSGGGSDGAIGAGWGDSSTTKADSTVGTGGAVARGSVGGFRLDTELDGYGANMSSGQRQLLCIARALLRRSKIVCVDEATARMDVRTAKLVDAAMAEAFRDATVLTVAHRLPPVLESCDKVAVMSEGRVVEQGRPRDLAADTTSRFSALLRA 579
QDP+LF GTVR NLDP G + D LW+AL + + + L +L E+ G N S G+RQLLC+ARALLR SKI+ +DEATA +D T L+ + + EAF+D TVLT+AHR+ VLE CD + VM G+V+E G+P DL T S F +LL A
Sbjct: 176 QDPVLFVGTVRYNLDPFGNYTDEQLWKALERTFIKETILKFPG--------------------------------------KLQAEVVENGENFSVGERQLLCMARALLRNSKIILLDEATASIDSETDALIQSTIREAFKDCTVLTIAHRINTVLE-CDHILVMDNGKVIEFGKPEDLVQKTDSAFGSLLAA 329
BLAST of mRNA_Ecto-sp9_F_contig1017.202.1 vs.
Match: ATP (binding cassette subfamily C member 12 n=1 Tax=Chelonoidis abingdonii TaxID=106734 RepID=A0A8C0HA34_CHEAB) HSP 1 Score: 129 bits (325), Expect = 5.430e-32 Identity = 78/193 (40.41%), Postives = 101/193 (52.33%), Query Frame = 1
Query: 1 QDPLLFAGTVRENLDPSGEHPDTALWQALRSSRLADVDLDRDSGGGSDGAIGAGWGDSSTTKADSTVGTGGAVARGSVGGFRLDTELDGYGANMSSGQRQLLCIARALLRRSKIVCVDEATARMDVRTAKLVDAAMAEAFRDATVLTVAHRLPPVLESCDKVAVMSEGRVVEQGRPRDLAADTTSRFSALLRA 579
QDP+LF GTVR NLDP G + D +W+AL + + + L +L E+ G N S G+RQLLC+ARALLR SKI+ +DEATA +D T L+ + EAFRD TVLT+AHR+ VLE CD + VM G+V+E G+P DL S F +LL A
Sbjct: 108 QDPVLFVGTVRYNLDPFGNYADEQIWKALERTFIKETILKLPG--------------------------------------KLQAEVVENGENFSVGERQLLCMARALLRNSKIILLDEATASIDSETDALIQCTIREAFRDCTVLTIAHRINTVLE-CDHILVMDNGKVIEFGKPEDLVQKPDSAFGSLLAA 261
BLAST of mRNA_Ecto-sp9_F_contig1017.202.1 vs.
Match: Putative (abc transporter c family member n=1 Tax=Anopheles braziliensis TaxID=58242 RepID=A0A2M3ZM50_9DIPT) HSP 1 Score: 130 bits (327), Expect = 6.810e-32 Identity = 77/196 (39.29%), Postives = 106/196 (54.08%), Query Frame = 1
Query: 1 QDPLLFAGTVRENLDPSGEHPDTALWQALRSSRLADVDLDRDSGGGSDGAIGAGWGDSSTTKADSTVGTGGAVARGSVGGFRLDTELDGYGANMSSGQRQLLCIARALLRRSKIVCVDEATARMDVRTAKLVDAAMAEAFRDATVLTVAHRLPPVLESCDKVAVMSEGRVVEQGRPRDLAADTTSRFSALLRAQDG 588
QDP LF GT+RENLDP H D+ +W+A+ + + S+GG LD +L+G G N+S+GQ+QLLC+ RALL++SKIV +DE TA +D+ + V + AFR TV+ VAHRL L++ D V VM G + EQG PR+LA+ T S F A+L+ Q G
Sbjct: 151 QDPFLFTGTIRENLDPRAVHIDSEIWEAITCCLASPLIQ-------------------------------------SLGG--LDAKLEGGGNNLSAGQKQLLCLTRALLKKSKIVLIDEGTANLDLESESAVQLILKNAFRGRTVIMVAHRLNGTLDT-DTVLVMQNGTIAEQGAPRELASQTASMFHAMLQEQQG 306
BLAST of mRNA_Ecto-sp9_F_contig1017.202.1 vs.
Match: Uncharacterized (protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843U0K6_COLES) HSP 1 Score: 135 bits (340), Expect = 1.330e-31 Identity = 91/233 (39.06%), Postives = 122/233 (52.36%), Query Frame = 1
Query: 1 QDPLLFAGTVRENLDPSGEHPDTALWQALRSSRLADVDLDRDSGGGSDGAIGAGWGDSSTTKADSTVGTGGAVARGSVGGFRLDTELDGYGANMSSGQRQLLCIARALLRRSKIVCVDEATARMDVRTAKLVDAAMAEAFRDATVLTVAHRLPPVLESCDKVAVMSEGRVVEQGRPRDLAADTTSRFSALLRAQDGGGNVAA*YRRPNVIVDDRASHG*RRCRTCVEDVDDGR 699
Q P+LF+GT+R NLDP EH D LW+AL + L D AV R S+G LD E+ G N S GQRQLL +ARALLRRSKI+ +DEATA +DVRT L+ + E F+ T+L +AHRL +++ CD+V V+S GR++E P DL ++ S FS ++++ G A Y R V VD + R R + DD R
Sbjct: 607 QSPVLFSGTIRFNLDPFNEHNDADLWEALERAHLKD-----------------------------------AVRRNSLG---LDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRVLVLSAGRLLEFDSPEDLLSNEESAFSKMVQST---GAANAQYLRSLVFVDGES----RASREAAKRRDDQR 793
BLAST of mRNA_Ecto-sp9_F_contig1017.202.1 vs.
Match: Uncharacterized (protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7N274_9MAGN) HSP 1 Score: 135 bits (340), Expect = 1.350e-31 Identity = 90/240 (37.50%), Postives = 128/240 (53.33%), Query Frame = 1
Query: 1 QDPLLFAGTVRENLDPSGEHPDTALWQALRSSRLADVDLDRDSGGGSDGAIGAGWGDSSTTKADSTVGTGGAVARGSVGGFRLDTELDGYGANMSSGQRQLLCIARALLRRSKIVCVDEATARMDVRTAKLVDAAMAEAFRDATVLTVAHRLPPVLESCDKVAVMSEGRVVEQGRPRDLAADTTSRFSALLRAQDGGGNVAA*YRRPNVIVDDRASHG*RRCRTCVEDVDDGRYAVLQIL 720
Q P+LF+GTVR NLDP EH D LW+AL + L DV ++R S+G LD E+ G N S GQRQLL +ARALLRRSKI+ +DEATA +DVRT L+ + E F+ T+L +AHRL +++ CD+V ++ G+V+E P DL + S FS ++++ G+ A Y + V+ ++R S R ++ DDG+ LQ L
Sbjct: 712 QAPVLFSGTVRFNLDPFTEHNDADLWEALERAHLKDV-----------------------------------ISRNSLG---LDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDSLIQKTIREEFKSCTILIIAHRLNTIID-CDRVLLLDAGQVLEFDTPEDLLLNERSSFSMMVQST---GSTNAEYLKSLVLGENRLS------RKEIKRQDDGKKNDLQQL 903
BLAST of mRNA_Ecto-sp9_F_contig1017.202.1 vs.
Match: ABC (transporter C family member 11 n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3CNC7_NOCCA) HSP 1 Score: 129 bits (325), Expect = 1.950e-31 Identity = 79/200 (39.50%), Postives = 110/200 (55.00%), Query Frame = 1
Query: 1 QDPLLFAGTVRENLDPSGEHPDTALWQALRSSRLADVDLDRDSGGGSDGAIGAGWGDSSTTKADSTVGTGGAVARGSVGGFRLDTELDGYGANMSSGQRQLLCIARALLRRSKIVCVDEATARMDVRTAKLVDAAMAEAFRDATVLTVAHRLPPVLESCDKVAVMSEGRVVEQGRPRDLAADTTSRFSALLRAQDGGGNV 600
Q P+LF+GTVR N+DP EH D LW+AL + + DV +AR +G LDTE+ G N S GQRQLL +ARALLRRSKI+ +DEATA +DVRT L+ + E F+ T+L +AHRL +++ CDK+ V+S G+ +E P++L + TS F ++ + G GN
Sbjct: 146 QSPVLFSGTVRFNVDPFSEHDDDDLWEALERAHIKDV-----------------------------------IARTPLG---LDTEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQKTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQALEYDSPQELLSRETSAFLGMVNST-GPGNA 305 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1017.202.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1017.202.1 >prot_Ecto-sp9_F_contig1017.202.1 ID=prot_Ecto-sp9_F_contig1017.202.1|Name=mRNA_Ecto-sp9_F_contig1017.202.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=110bp MSSGQRQLLCIARALLRRSKIVCVDEATARMDVRTAKLVDAAMAEAFRDAback to top mRNA from alignment at Ecto-sp9_F_contig1017:99..3086+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1017.202.1 ID=mRNA_Ecto-sp9_F_contig1017.202.1|Name=mRNA_Ecto-sp9_F_contig1017.202.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2988bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1017:99..3086+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1017:99..3086+ >mRNA_Ecto-sp9_F_contig1017.202.1 ID=mRNA_Ecto-sp9_F_contig1017.202.1|Name=mRNA_Ecto-sp9_F_contig1017.202.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=660bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1017:99..3086+ (Ectocarpus species9 EcSCA_722f female)back to top |