mRNA_Ecto-sp9_F_contig10163.198.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10163.198.1
Unique NamemRNA_Ecto-sp9_F_contig10163.198.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10163.198.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K212_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 1.380e-49
Identity = 155/203 (76.35%), Postives = 155/203 (76.35%), Query Frame = 1 
Query:   37 AAQVLELVGHVLPSALADLALAMASACTAGGNLGDNSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AQATAGVSAKDTGGKNHVGDDXXXXXXXXXXXXAGPERGTALFRAVGGVDPDTTHLNAGFEALLEEGRGAFPAEERQXXXXXXXXXXXXXXGVEEEAGRRRAGASSYCQEARARVL 642
            A QVLELVGHVLPSALADLALAMASACTAG NLGDNSNXXXXXXXXXXXXXXXXXXXXXXXXX                        AQATAGV AKD  GKNHVGDD            AGPERG ALFRAVGGVDPDTTHLNAGFEALLEEGRG  PAEERQXXXXXXXXXXXXX GVE EAGRRR GASSYCQE RARVL
Sbjct:  949 AVQVLELVGHVLPSALADLALAMASACTAGRNLGDNSNXXXXXXXXXXXXXXXXXXXXXXXXXGAAGGVSKPATAGLGPRRRQPPPEAQATAGVYAKDARGKNHVGDDGSPTAAA-----AGPERGPALFRAVGGVDPDTTHLNAGFEALLEEGRGESPAEERQXXXXXXXXXXXXXGGVEGEAGRRRGGASSYCQETRARVL 1146
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10163.198.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.380e-4976.35protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10163contigEcto-sp9_F_contig10163:2269..2922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size656
Cds size654
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928211.6575704-CDS-Ecto-sp9_F_contig10163:2268..29221622928211.6575704-CDS-Ecto-sp9_F_contig10163:2268..2922Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10163 2269..2922 +
1692277796.8132856-CDS-Ecto-sp9_F_contig10163:2268..29221692277796.8132856-CDS-Ecto-sp9_F_contig10163:2268..2922Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10163 2269..2922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10163.198.1prot_Ecto-sp9_F_contig10163.198.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10163 2269..2922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10163.198.1

>prot_Ecto-sp9_F_contig10163.198.1 ID=prot_Ecto-sp9_F_contig10163.198.1|Name=mRNA_Ecto-sp9_F_contig10163.198.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=218bp
MNHSRVRTHTFPAAQVLELVGHVLPSALADLALAMASACTAGGNLGDNSN
DDDDHDGSDGGGRLVADTAAATARGAAGGVSKPAAAGLGSRRRQPPPEAQ
ATAGVSAKDTGGKNHVGDDGSPTAAAAAAAAAGPERGTALFRAVGGVDPD
TTHLNAGFEALLEEGRGAFPAEERQRQRQQEQDGGDGSGGVEEEAGRRRA
GASSYCQEARARVLLAAG
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mRNA from alignment at Ecto-sp9_F_contig10163:2269..2922+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10163.198.1 ID=mRNA_Ecto-sp9_F_contig10163.198.1|Name=mRNA_Ecto-sp9_F_contig10163.198.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=654bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10163:2269..2922+ (Ectocarpus species9 EcSCA_722f female)
ATGAACCATTCACGTGTGCGTACGCACACCTTCCCTGCTGCGCAGGTGCT
TGAGCTTGTCGGGCACGTGCTGCCTTCGGCCCTCGCCGACCTTGCCCTGG
CGATGGCGTCCGCCTGCACGGCCGGCGGGAACCTTGGTGACAACAGCAAC
GACGACGACGATCACGACGGGAGTGATGGAGGGGGGCGCCTCGTGGCCGA
CACTGCTGCTGCTACCGCACGTGGAGCCGCGGGGGGGGTAAGCAAGCCGG
CGGCGGCAGGGCTTGGTTCGAGGCGTCGTCAACCCCCGCCGGAGGCGCAA
GCAACAGCCGGCGTTTCCGCCAAGGATACCGGTGGCAAGAATCACGTCGG
TGATGACGGTTCTCCAACGGCTGCCGCCGCCGCGGCCGCCGCCGCCGGCC
CCGAGCGAGGGACGGCGCTGTTTCGAGCGGTGGGCGGGGTCGATCCCGAC
ACGACTCACCTGAACGCCGGGTTCGAGGCCCTGCTGGAGGAAGGGAGAGG
AGCATTTCCGGCGGAGGAACGGCAGCGGCAGCGGCAGCAGGAGCAAGACG
GGGGTGACGGTAGCGGCGGCGTGGAAGAAGAGGCCGGTCGGCGGCGGGCC
GGCGCCTCGTCCTACTGCCAGGAGGCGAGGGCAAGGGTGTTGCTCGCGGC
GGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10163:2269..2922+

>mRNA_Ecto-sp9_F_contig10163.198.1 ID=mRNA_Ecto-sp9_F_contig10163.198.1|Name=mRNA_Ecto-sp9_F_contig10163.198.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1308bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10163:2269..2922+ (Ectocarpus species9 EcSCA_722f female)
ATGAACCATTCACGTGTGCGTACGCACACCTTCCCTGCTGCGCAGGTGCT
TGAGCTTGTCGGGCACGTGCTGCCTTCGGCCCTCGCCGACCTTGCCCTGG
CGATGGCGTCCGCCTGCACGGCCGGCGGGAACCTTGGTGACAACAGCAAC
GACGACGACGATCACGACGGGAGTGATGGAGGGGGGCGCCTCGTGGCCGA
CACTGCTGCTGCTACCGCACGTGGAGCCGCGGGGGGGGTAAGCAAGCCGG
CGGCGGCAGGGCTTGGTTCGAGGCGTCGTCAACCCCCGCCGGAGGCGCAA
GCAACAGCCGGCGTTTCCGCCAAGGATACCGGTGGCAAGAATCACGTCGG
TGATGACGGTTCTCCAACGGCTGCCGCCGCCGCGGCCGCCGCCGCCGGCC
CCGAGCGAGGGACGGCGCTGTTTCGAGCGGTGGGCGGGGTCGATCCCGAC
ACGACTCACCTGAACGCCGGGTTCGAGGCCCTGCTGGAGGAAGGGAGAGG
AGCATTTCCGGCGGAGGAACGGCAGCGGCAGCGGCAGCAGGAGCAAGACG
GGGGTGACGGTAGCGGCGGCGTGGAAGAAGAGGCCGGTCGGCGGCGGGCC
GGCGCCTCGTCCTACTGCCAGGAGGCGAGGGCAAGGGTGTTGCTCGCGGC
GGGGATGAACCATTCACGTGTGCGTACGCACACCTTCCCTGCTGCGCAGG
TGCTTGAGCTTGTCGGGCACGTGCTGCCTTCGGCCCTCGCCGACCTTGCC
CTGGCGATGGCGTCCGCCTGCACGGCCGGCGGGAACCTTGGTGACAACAG
CAACGACGACGACGATCACGACGGGAGTGATGGAGGGGGGCGCCTCGTGG
CCGACACTGCTGCTGCTACCGCACGTGGAGCCGCGGGGGGGGTAAGCAAG
CCGGCGGCGGCAGGGCTTGGTTCGAGGCGTCGTCAACCCCCGCCGGAGGC
GCAAGCAACAGCCGGCGTTTCCGCCAAGGATACCGGTGGCAAGAATCACG
TCGGTGATGACGGTTCTCCAACGGCTGCCGCCGCCGCGGCCGCCGCCGCC
GGCCCCGAGCGAGGGACGGCGCTGTTTCGAGCGGTGGGCGGGGTCGATCC
CGACACGACTCACCTGAACGCCGGGTTCGAGGCCCTGCTGGAGGAAGGGA
GAGGAGCATTTCCGGCGGAGGAACGGCAGCGGCAGCGGCAGCAGGAGCAA
GACGGGGGTGACGGTAGCGGCGGCGTGGAAGAAGAGGCCGGTCGGCGGCG
GGCCGGCGCCTCGTCCTACTGCCAGGAGGCGAGGGCAAGGGTGTTGCTCG
CGGCGGGG
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