mRNA_Ecto-sp9_F_contig10158.191.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10158.191.1
Unique NamemRNA_Ecto-sp9_F_contig10158.191.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10158.191.1 vs.
Match: Aldehyde (dehydrogenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK18_ECTSI)

HSP 1 Score: 586 bits (1510), Expect = 9.490e-202
Identity = 361/402 (89.80%), Postives = 363/402 (90.30%), Query Frame = 1 
Query:    1 QEKMSEEEKGRRAAEHFSLFALDGETGEVRWSHGGGAHHGAXXXXXXXXXXXX---GIRDYDYFDFGFDLDYPGFGDDLLYNLTEGAAAAPAFEGLAAVAGAVGXXXXXXXXXXXXXXXXXWVRVVLARTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQPQPARRFLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDLEVGAASPATIPRDSAGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--EGPARFDAVFAVSSGVVSSYDDEGRLKWQDRRGPKWTRKADTEGGDPSNGGGYVVPFTLEVGWPGRGRGRIINPSPGAEERIIVVGQ 1191
            +EKMSEEEKGRRAAEHFSLFALDGETGEVRWSHGGGAHHGA   XXXXXXXXX   GIRDYDYFDFGFDLDYPGFGDDLLYN TEGAAAA AFEGLAAVAGAVG                        RTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQP  ARRFLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDLEVGAASPA IPRDSAGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   EGPARFDAVFAVSSGVVSSYDDEGRLKWQDRRGPKWTRK DTEGGDPSNGGGYVVPFTLEVGWPGRGRGRIINPSPGAEERI+VVGQ
Sbjct:  232 EEKMSEEEKGRRAAEHFSLFALDGETGEVRWSHGGGAHHGAQDKXXXXXXXXXXXXGIRDYDYFDFGFDLDYPGFGDDLLYNQTEGAAAALAFEGLAAVAGAVGGGSGQ-------------------RTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQP--ARRFLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDLEVGAASPAIIPRDSAGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWGEGPARFDAVFAVSSGVVSSYDDEGRLKWQDRRGPKWTRK-DTEGGDPSNGGGYVVPFTLEVGWPGRGRGRIINPSPGAEERILVVGQ 611
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10158.191.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP99_9PHAE)

HSP 1 Score: 442 bits (1136), Expect = 2.510e-143
Identity = 305/514 (59.34%), Postives = 316/514 (61.48%), Query Frame = 1 
Query:    1 QEKMSEEEKGRRAAEHFSLFALDGETGEVRWSHGGGAHHGAXXXXXXXXXXXXGIRDYDYFDFGFDLDYPGFGDDLLYNLTEGAAAAPAFEGLAAVAGAVGXXXXXXXXXXXXXXXXX-W----------------------------------------------------------------VRVVLARTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQPQPARRFLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDLEVGAASPATIPRDSAGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGPARFDAVF---------------------------------------------AVSSGVVSSYDDEGRLKWQDRR---GPKWTR----KADTEGGDPSNGGGYVVPFTLEVGWPGRGRGRIINPSPGAEERIIVVGQ 1191
            +EKMS EEKG+RAAEHFSLFALDGETGEVRWSHGGGAHHGA            GIRDYDYFDFGFDLDYPGFG DLL N TEG AAA AFEGLAAVAGAVG                  W                                                                VRVVLARTRDGLEAVELSTGKPLSAVALPAA GTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMG+LSEEPTPSQPQPARRFLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDLEVG ASPA I R SAG  A     XXXXXXXXXXXXXXXXXXXXXXXXXXX                                                       A+  GV        +L+ +      G  W +    +   EGGDPSNGGGYVVPFTLEVGW GRGR RI NP PGAEERI+V+GQ
Sbjct:  264 EEKMSAEEKGKRAAEHFSLFALDGETGEVRWSHGGGAHHGAQDKQNGGGS---GIRDYDYFDFGFDLDYPGFGGDLLSNQTEGTAAALAFEGLAAVAGAVGGGGGRQYRRSLLNHLPHAWSAPSDTRLEITALHRRGTGDRRNGVSAGGVVGEGGGEDHPXXXXXXXXXXXXXXXXXXXXXXGLVRVVLARTRDGLEAVELSTGKPLSAVALPAATGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGYLSEEPTPSQPQPARRFLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDLEVGVASPAIIQRGSAGAGAATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGXXXXXXXXXXXXXXXXRGSRALRRGVCREQRGSEQLRRRGAAKVAGSPWAQVDPERWGAEGGDPSNGGGYVVPFTLEVGWLGRGRRRITNPPPGAEERILVLGQ 774
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BLAST of mRNA_Ecto-sp9_F_contig10158.191.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B999_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.480e-21
Identity = 76/233 (32.62%), Postives = 107/233 (45.92%), Query Frame = 1 
Query:  364 VVLARTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHE----GVAMGHLSEEPTPSQPQPARRFLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDLEVGAASPATIPRDSAGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGPARFDAVFAVSSGVVSSYDDEGRLKWQDRRGPKWTRKA 1050
            VV A +  G+EAV L  GKP+ A+ALP       G+Y D+NGD ++DH+  V         H ++       + HLS     ++ +     LPPC A+A+SG+P REQLFN SLC   G+L  +++R  +  +R    S   EV  A P T+ R                                         P  +D +FAVSSGVV+SY  +G L WQ ++ P W   A
Sbjct:  127 VVFAYSEHGVEAVTLHHGKPVFALALP-----KGGLYADVNGDNLIDHLSVVEQH------HANQDNPASPTLSHLSGSAVHARVRD-HGLLPPCSAVALSGIPAREQLFNGSLCDHHGSLLSLRDRQERVFNRKRRMSNHEEVRGAEPITVERPQ-------------------------FLGRLVAQHAVTSAPKFYDTIFAVSSGVVTSYRSDGELNWQVQKAPVWGENA 322
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BLAST of mRNA_Ecto-sp9_F_contig10158.191.1 vs.
Match: Uncharacterized (protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1F657_ASPOF)

HSP 1 Score: 87.0 bits (214), Expect = 1.790e-14
Identity = 63/158 (39.87%), Postives = 90/158 (56.96%), Query Frame = 1 
Query:  355 WV-RVVLARTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQPQPARRFLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLD---LEVGAASPATIPRD 816
            WV  VV+A  ++G+EAV L++G+ +  + LP     + G++ D+NGDGV+DHVQ VG  G +      + V  G +               L PC+A+A SG+P REQLFNAS+CH A  LF + +     +SRS  RS+D   LEV  A+P  + RD
Sbjct:  361 WVPNVVVAHQKEGIEAVHLASGRTICKLHLP-----EGGLHADINGDGVLDHVQVVGGHGAE------QRVVTGSME-------------VLKPCWAIATSGVPVREQLFNASICHHA--LFNLFQH----DSRSFGRSVDVGTLEV--ATPILVHRD 486
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10158.191.1 vs.
Match: uncharacterized (protein LOC107407575 n=4 Tax=Rhamnaceae TaxID=3608 RepID=A0A6P3YZM5_ZIZJJ)

HSP 1 Score: 85.1 bits (209), Expect = 7.690e-14
Identity = 60/151 (39.74%), Postives = 83/151 (54.97%), Query Frame = 1 
Query:  364 VVLARTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQPQPARRFLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDLEVGAASPATIPRD 816
            VV+A  ++G+EAV L+TG+ L  + L      + G++ D+NGDGV+DHVQAVG  G +      + V  G +               L PC+A+A SG+P REQLFNAS+CH +   F      S+   RS   +  LEV  A+P  IPRD
Sbjct:  391 VVVAHQKEGIEAVHLATGRTLCKLHLQ-----EGGLHADINGDGVLDHVQAVGGNGAE------QTVVSGSME-------------VLRPCWAVATSGVPVREQLFNASICHHSPFNFFQHGEFSRNFGRSQDVA-SLEV--ATPILIPRD 514
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10158.191.1 vs.
Match: Aldehyde (dehydrogenase, putative n=1 Tax=Ricinus communis TaxID=3988 RepID=B9T4Y7_RICCO)

HSP 1 Score: 85.1 bits (209), Expect = 9.760e-14
Identity = 62/154 (40.26%), Postives = 84/154 (54.55%), Query Frame = 1 
Query:  355 WV-RVVLARTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQPQPARRFLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDLEVGAASPATIPR 813
            WV  VV+A  ++G+EAV L+TG+ L  + L      + G++ D+NGDGV+DHVQAVG  G +      + V  G +               L PC+A+A SG+P REQLFNAS+CH +          S+   R+S  S  LEV  ASP  IPR
Sbjct:  745 WVPNVVVAHQKEGIEAVHLATGRTLCKLHL-----LEGGLHADINGDGVLDHVQAVGGNGAE------QTVVSGSME-------------VLRPCWAVATSGVPVREQLFNASICHHSPFNLFQHGEFSRNFGRTSDAS-SLEV--ASPILIPR 871
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10158.191.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843WSK9_COLES)

HSP 1 Score: 84.0 bits (206), Expect = 1.140e-13
Identity = 58/155 (37.42%), Postives = 85/155 (54.84%), Query Frame = 1 
Query:  355 WV-RVVLARTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQPQPARRFLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDLEVGAASPATIPRD 816
            WV  VV+A  ++G+EAV L+TG+ +  + LP     + G++ D+NGDGV+DHVQAVG  G +      + V  G +               L PC+A+A SG+P REQLFN S+CH            ++   R++  S+ LEV  A+P  +PRD
Sbjct:  168 WVPNVVVAHEKEGIEAVHLATGRTICKLHLP-----EGGLHADVNGDGVLDHVQAVGGNGAE------QTVVSGSME-------------VLRPCWAVATSGVPVREQLFNVSICHHTHFNLFQHGDFARAFGRTTDTSM-LEV--ATPILVPRD 295
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10158.191.1 vs.
Match: Uncharacterized (protein n=2 Tax=Vitis TaxID=3603 RepID=D7SP47_VITVI)

HSP 1 Score: 84.0 bits (206), Expect = 1.810e-13
Identity = 63/157 (40.13%), Postives = 87/157 (55.41%), Query Frame = 1 
Query:  355 WV-RVVLARTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQPQPARRFLPPCYALAVSGLPPREQLFNASLCHDAGA-LFEVQERLSKPNSRSSSRSLDL-EVGAASPATIPRD 816
            WV  VV+A  R+G+EAV L TG+ +  + L      + G++ D+NGDGV+DHVQ VG  G +      + V  G +               L PC+A+A SG+P REQLFNAS+CH +   LF+  E      SRS SR+ DL  +  A+P  IPR+
Sbjct:  391 WVPNVVVAHQREGIEAVHLPTGRTICKLHLQ-----EGGLHADINGDGVLDHVQVVGGNGAE------QTVVSGSME-------------VLRPCWAVATSGVPVREQLFNASICHHSPFNLFQHGEF-----SRSFSRTPDLGSLEVATPILIPRN 518
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10158.191.1 vs.
Match: Cysteine-rich (receptor-like protein kinase 45 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438K5R2_VITVI)

HSP 1 Score: 84.0 bits (206), Expect = 2.150e-13
Identity = 63/157 (40.13%), Postives = 87/157 (55.41%), Query Frame = 1 
Query:  355 WV-RVVLARTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQPQPARRFLPPCYALAVSGLPPREQLFNASLCHDAGA-LFEVQERLSKPNSRSSSRSLDL-EVGAASPATIPRD 816
            WV  VV+A  R+G+EAV L TG+ +  + L      + G++ D+NGDGV+DHVQ VG  G +      + V  G +               L PC+A+A SG+P REQLFNAS+CH +   LF+  E      SRS SR+ DL  +  A+P  IPR+
Sbjct:  433 WVPNVVVAHQREGIEAVHLPTGRTICKLHLQ-----EGGLHADINGDGVLDHVQVVGGNGAE------QTVVSGSME-------------VLRPCWAVATSGVPVREQLFNASICHHSPFNLFQHGEF-----SRSFSRTPDLGSLEVATPILIPRN 560
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10158.191.1 vs.
Match: Uncharacterized (protein n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6RM74_ROSCH)

HSP 1 Score: 83.6 bits (205), Expect = 2.400e-13
Identity = 61/156 (39.10%), Postives = 89/156 (57.05%), Query Frame = 1 
Query:  355 WV-RVVLARTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQPQPARRFLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSSSRSLDL-EVGAASPATIPRD 816
            WV  VV+A  ++G+EAV L++G+ L  + L      +AG++ D+NGDGV+DHVQAVG  G +      + V  G +               L PC+A+A SG+P REQLFNAS+CH +  +F + +      SRS  R+ DL  +  A+P  IPR+
Sbjct:  390 WVPNVVVAHQKEGIEAVHLASGRTLCKLNLQ-----EAGLHADVNGDGVLDHVQAVGGNGAE------QTVVSGSME-------------VLRPCWAVATSGVPVREQLFNASICHHS--VFNLFQH--GDYSRSYGRAPDLASLEVATPILIPRN 517
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10158.191.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Aldehyde9.490e-20289.80dehydrogenase, putative n=1 Tax=Ectocarpus silicul... [more]
Uncharacterized2.510e-14359.34protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical1.480e-2132.62protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Uncharacterized1.790e-1439.87protein n=2 Tax=Asparagus officinalis TaxID=4686 R... [more]
uncharacterized7.690e-1439.74protein LOC107407575 n=4 Tax=Rhamnaceae TaxID=3608... [more]
Aldehyde9.760e-1440.26dehydrogenase, putative n=1 Tax=Ricinus communis T... [more]
Uncharacterized1.140e-1337.42protein (Fragment) n=1 Tax=Colocasia esculenta Tax... [more]
Uncharacterized1.810e-1340.13protein n=2 Tax=Vitis TaxID=3603 RepID=D7SP47_VITV... [more]
Cysteine-rich2.150e-1340.13receptor-like protein kinase 45 n=1 Tax=Vitis vini... [more]
Uncharacterized2.400e-1339.10protein n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10158contigEcto-sp9_F_contig10158:450..4538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score590.9
Seed ortholog evalue4.8e-166
Seed eggNOG ortholog2880.D8LK18
EggNOG OGs28H9E@1,2QPN1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size1435
Cds size1275
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10158.191.1prot_Ecto-sp9_F_contig10158.191.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10158 459..4387 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928210.9103272-UTR-Ecto-sp9_F_contig10158:449..4581622928210.9103272-UTR-Ecto-sp9_F_contig10158:449..458Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10158 450..458 +
1692277796.352556-UTR-Ecto-sp9_F_contig10158:449..4581692277796.352556-UTR-Ecto-sp9_F_contig10158:449..458Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10158 450..458 +
1622928210.9979594-UTR-Ecto-sp9_F_contig10158:4387..45381622928210.9979594-UTR-Ecto-sp9_F_contig10158:4387..4538Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10158 4388..4538 +
1692277796.411528-UTR-Ecto-sp9_F_contig10158:4387..45381692277796.411528-UTR-Ecto-sp9_F_contig10158:4387..4538Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10158 4388..4538 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928210.9261155-CDS-Ecto-sp9_F_contig10158:458..7691622928210.9261155-CDS-Ecto-sp9_F_contig10158:458..769Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10158 459..769 +
1692277796.3615162-CDS-Ecto-sp9_F_contig10158:458..7691692277796.3615162-CDS-Ecto-sp9_F_contig10158:458..769Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10158 459..769 +
1622928210.9430673-CDS-Ecto-sp9_F_contig10158:1112..13051622928210.9430673-CDS-Ecto-sp9_F_contig10158:1112..1305Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10158 1113..1305 +
1692277796.3690152-CDS-Ecto-sp9_F_contig10158:1112..13051692277796.3690152-CDS-Ecto-sp9_F_contig10158:1112..1305Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10158 1113..1305 +
1622928210.9563427-CDS-Ecto-sp9_F_contig10158:1679..17691622928210.9563427-CDS-Ecto-sp9_F_contig10158:1679..1769Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10158 1680..1769 +
1692277796.3772776-CDS-Ecto-sp9_F_contig10158:1679..17691692277796.3772776-CDS-Ecto-sp9_F_contig10158:1679..1769Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10158 1680..1769 +
1622928210.9663348-CDS-Ecto-sp9_F_contig10158:2656..27791622928210.9663348-CDS-Ecto-sp9_F_contig10158:2656..2779Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10158 2657..2779 +
1692277796.3874614-CDS-Ecto-sp9_F_contig10158:2656..27791692277796.3874614-CDS-Ecto-sp9_F_contig10158:2656..2779Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10158 2657..2779 +
1622928210.9750407-CDS-Ecto-sp9_F_contig10158:3187..35091622928210.9750407-CDS-Ecto-sp9_F_contig10158:3187..3509Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10158 3188..3509 +
1692277796.3955758-CDS-Ecto-sp9_F_contig10158:3187..35091692277796.3955758-CDS-Ecto-sp9_F_contig10158:3187..3509Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10158 3188..3509 +
1622928210.9880645-CDS-Ecto-sp9_F_contig10158:4151..43871622928210.9880645-CDS-Ecto-sp9_F_contig10158:4151..4387Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10158 4152..4387 +
1692277796.4037097-CDS-Ecto-sp9_F_contig10158:4151..43871692277796.4037097-CDS-Ecto-sp9_F_contig10158:4151..4387Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10158 4152..4387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10158.191.1

>prot_Ecto-sp9_F_contig10158.191.1 ID=prot_Ecto-sp9_F_contig10158.191.1|Name=mRNA_Ecto-sp9_F_contig10158.191.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=425bp
MSEEEKGRRAAEHFSLFALDGETGEVRWSHGGGAHHGAQDKQNGGGGGGG
GIRDYDYFDFGFDLDYPGFGDDLLYNLTEGAAAAPAFEGLAAVAGAVGGG
GGRRGESYAGGGGGGWVRVVLARTRDGLEAVELSTGKPLSAVALPAAAGT
DAGVYVDLNGDGVVDHVQAVGTRGGQGWGHLHEGVAMGHLSEEPTPSQPQ
PARRFLPPCYALAVSGLPPREQLFNASLCHDAGALFEVQERLSKPNSRSS
SRSLDLEVGAASPATIPRDSAGVAAAAATGAATARSSSGAGRGARSGGGG
GGGGGWGEGPARFDAVFAVSSGVVSSYDDEGRLKWQDRRGPKWTRKADTE
GGDPSNGGGYVVPFTLEVGWPGRGRGRIINPSPGAEERIIVVGQVRERRP
QIRYEPPRRRFRARTGRKSPRDLP*
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mRNA from alignment at Ecto-sp9_F_contig10158:450..4538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10158.191.1 ID=mRNA_Ecto-sp9_F_contig10158.191.1|Name=mRNA_Ecto-sp9_F_contig10158.191.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4089bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10158:450..4538+ (Ectocarpus species9 EcSCA_722f female)
CAGGAGAAGATGAGCGAGGAGGAGAAAGGGAGGAGAGCCGCCGAGCACTT
CTCCCTCTTCGCGCTTGACGGCGAGACGGGCGAGGTCCGCTGGAGCCACG
GCGGGGGTGCTCATCACGGTGCGCAGGACAAGCAGAACGGCGGCGGCGGC
GGCGGCGGCGGGATCAGGGACTACGACTACTTCGACTTCGGCTTCGACCT
CGACTACCCCGGCTTCGGCGACGACCTCCTCTACAACCTAACGGAGGGTG
CCGCAGCGGCCCCGGCGTTCGAGGGCCTCGCGGCCGTGGCCGGCGCCGTC
GGGGGCGGAGGCGGGCGGCGGTACCGGCGGTCCCTCCTCAACCACTTGCC
CCACGCCTGGTCCGCCCCGTCCGACACTCGGCTCGAGATCACGGCCCTCC
ACCGAAGAGGCACGGGTGACAGGCGCAACGGCGTTAGCGCCGGTGGCGTC
GTCGGGGAAGGGGGCGGGGAGGATCACCCCGCCGCCGGCGGACGAAGGCT
TCCCGAAGCGGGGGGGGTTTCCGCGGGTTCTGCGACGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGCCCGCGGGGGGGCGGGGGGGGGGGCGCGGGGGGGG
GGGCTGCCCCCGGGGAAGNNNNNNNNNNCGAGGCGAACGCGGCAGGCCGA
GGTGGGGGCACAGAGGGGAGTCGTATGCGGGAGGGGGCGGGGGGGGGTGG
GTGAGGGTCGTCCTCGCGAGGACGAGGGACGGGCTCGAGGCGGTGGAGCT
GTCCACGGGGAAGCCGCTCAGCGCGGTCGCGCTGCCCGCCGCCGCGGGGA
CGGACGCCGGGGTGTACGTGGACCTGAACGGCGACGGCGTCGTGGACCAC
GTCCAGGTGAGGACCTCAAGAAGGAATGGTGGGGACGGTGCCATTGGATA
AGGCGGGGCAAGGGACAGGGAGGGAGAGAGAACGAGAGAGAGAGAAAGAG
AGAGATAGAGAGAAAGGGACGGAAAGATAGAGACAGAGGGATAGACAGAG
AGAGAGAGAGAGATAAGACAGGCAGAGAAGGAAGTTCGACTTTTTGTTTT
GTTGCTCCTGGCCCCGGTGCGATCCCATTTGTCCTTGCTGTAATCGGGAT
TGGGCAAAGGGTGTACCACACATATGGCATACTAAAGATGTGTTTGGCTT
GCCTCTGACCCCTTTCAATACATCCCTCCATGGGGGCGGGCGGGCGGGCG
GGCGGGCGGGCGGCGGTTTCGACCGGGCAGGCGGTGGGCACGCGCGGAGG
GCAAGGGTGGGGGCATCTACACGAGGGGGTGGCCATGGGCCATCTGTCCG
AGGAGCCCACGCCCTCCCAGGTTAGTTCGTTGAGGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCAGCTGCTGTGGTCGTCGTTGCTTGTGTCGCGTTA
TTGTTTAGGCCGCGCGTTGATGACCCATCACTTGCCCCCCTCTCCGCAAA
CATAGGCCAACAACAATGAGGTGATCAAGAACATGCTCTTGCGTGGAAGT
AGTTTAGCGTTCAAACGAGGGTTGCGAGCATGATGCTCGCGTGTTCACGA
TCAGTACGAAAAACAACGCTGCTGCCCAGCAGCGTCTAGAAATAACCCTT
ACTTGACTTTGCCGACTGACGAATCAAGATGTTGACCCCAAGAACCGAAG
CTGACGCCACTTGTTCGCCGGGGCCACCCGCACTATTTAAAGTACGTGGC
AATTTTTTTTGGCGCGTGCCTCGGTTTCCTTGTCCTCGTCGAGGATATCG
TGGTGCTTACTTACTCGGAGCGTTTCAACTTGGCGTCACCCAACAGTTAA
CGAAAAACTGGTCTGGCGCGTGCTACAGAGAATATAGTAAAAAAGAAGAC
GTTCGGGGCACTGGGTGATATGCCCAGGCGGTGGCTCGACGTGTGTCTCG
TGTACACTTGCGGGTATTCATAGGCTATTGCGTCGCTTGCTTCGGCGCTA
TAGAGCTATGTCTACACGGAGCAGCAGGCGTTACCTCACCTGCAAGCATG
GTTATTTTTCAGCAGCAGTCACAACCTCTGTTGCGACACAGCTTTCGGGG
GATACATCCACCAGCTCGGCATCGAGCTACAACGTGAAAAGACGGCTGTG
GCACTCGGCGGTACTAATACGGACGTAAATCTACCGTTTTCCCCACGCCC
TCCACCTCACCCCGCTGCTATTTTCTCCTTTTGTTTCTCCCCCCACGAAA
AAAAAAGCCGCAGCCGGCGCGACGGTTTCTTCCCCCGTGCTACGCCCTCG
CGGTGAGCGGCCTTCCCCCTAGAGAGCAGCTCTTCAATGCCTCCCTTTGC
CACGACGCCGGAGCTCTCTTCGAAGTACAGGTACGTGCAGTAGGAGGTGC
GCTCGTCCTGCTTGCCTGCCTGCAATGCCATCGGCCTGAGGATTGTTTAG
TTCAGGTGGCACGACACGAAGCGAGATCCTGCGTGCGAGGGTGGCCCGTT
CGCTCGGAGAGCTTGACAACAGACCCCGTCATGGCCGGGCGTTCGTTGTT
ACTGCCTCCTTGTCTTTTCTGCGCCAGTTTTTAAGGGTTTCGGAAAAAAA
AGCCTTCGTTGGGTCACACCGCGGTGTCGTCTGTAACCCCTTCCTGTTCC
CCCCAACCCCCAACCCCTTGCCGTGTCTCACCATCACGACATTTTCAGCA
GTACCGGTTGCCGAACACACGCCGGAACCTCCCCTCCATCCATTCATCGT
CCTCCCACCCTCTCTTACAATCTTGATACAAAAAACAGGAACGCCTTAGC
AAGCCCAACTCCCGCTCGTCCTCACGATCCCTGGACCTAGAGGTCGGAGC
CGCATCGCCGGCCACCATCCCAAGAGACTCGGCGGGGGTGGCGGCGGCGG
CGGCCACGGGGGCCGCCACCGCCCGCTCGAGCTCTGGGGCAGGAAGGGGA
GCACGTTCGGGAGGGGGAGGGGGAGGGGGAGGGGGGTGGGGAGAGGGTCC
CGCGCGCTTCGACGCGGTGTTTGCCGTGAGCAGTGGGGTCGTAAGCAGCT
ACGACGACGAGGGGCGGCTAAAGTGGCAGGATCGCCGCGGGCCCAAGTGG
ACCCGGAAAGGTGGGGTGTTTGATTTTTGACCGATGCTGCTTGCCTTAAG
TCAGCTGAGAAAGTCGAACGGCCGGCCCTACCGGTTTTGGCCCTGTTTGG
GCGTCAAGAAGCGGTGATGCGCTGAACCAGGCTCGCGGGCATGTAGGGTG
CTTCAGGGACGGATAAAAAGGTGTATGGTCGAGGGGTAATGTGGAGCTTG
GTGTGCGTGTGTTGTGATGGGTCGTGGACTTGTTGTTGACGAACCGAGGA
TTTGCCATGTACAAGCGTTTCCTCAGGACAGGTCTCTCTCTCTCCGAGTC
TCGGATACTTTCGCGCATTTCCCGAGTCACGAGTTTCGAAACCTTGCGAA
CAAGCCCCCGACATATGTGTTTATGTGCGTGACAGTTGTATTCATTTGTC
TTTCTGGTTTGTTTACACTGTTCGTCGTTCAAGGTTTGTCGTGATAACCA
CCGTACTGACTCGTTGCTGCGCACAACCACTCGACCGAAATTTGCAATGT
ACTTGGTCGTTGTACTTGCTCATGTAACAACATAACCATCCGTATTTACG
TTTCTACCGGCCCCTGCTTGGGGGCGTTGTATCTAAGCAAATCGCTTGTT
TTCGTCACCCTCTGCCCTTGTCCTTCATCGCCGTCGGCTTTATTCGCGAG
AGCAGACACCGAAGGCGGAGACCCCAGCAACGGGGGGGGCTACGTGGTCC
CCTTCACCCTGGAGGTCGGCTGGCCTGGTCGCGGCCGGGGAAGGATTATC
AACCCTTCCCCTGGCGCCGAGGAGCGAATTATAGTGGTGGGGCAGGTGAG
AGAACGCAGGCCACAGATACGGTATGAACCACCAAGGCGAAGATTCAGGG
CCAGAACAGGCCGGAAGTCGCCGCGGGACCTCCCTTGACTACCTCGGTCT
TCCCGTGGACCCGTACGACATGAAGCGTCGGCATTGCGCGGTCATCCGCG
CGCGAAAACAACAGCACTTCGTCGTTATCGTTCTTGTTTCTTTGTCGGCA
ATCTCGAGACCCTTTTCCCCATCCGCTATCCACTGCCAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10158:450..4538+

>mRNA_Ecto-sp9_F_contig10158.191.1 ID=mRNA_Ecto-sp9_F_contig10158.191.1|Name=mRNA_Ecto-sp9_F_contig10158.191.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2550bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10158:450..4538+ (Ectocarpus species9 EcSCA_722f female)
ATGAGCGAGGAGGAGAAAGGGAGGAGAGCCGCCGAGCACTTCTCCCTCTT
CGCGCTTGACGGCGAGACGGGCGAGGTCCGCTGGAGCCACGGCGGGGGTG
CTCATCACGGTGCGCAGGACAAGCAGAACGGCGGCGGCGGCGGCGGCGGC
GGGATCAGGGACTACGACTACTTCGACTTCGGCTTCGACCTCGACTACCC
CGGCTTCGGCGACGACCTCCTCTACAACCTAACGGAGGGTGCCGCAGCGG
CCCCGGCGTTCGAGGGCCTCGCGGCCGTGGCCGGCGCCGTCGGGGGCGGA
GGCGGGCGGCGATGAGCGAGGAGGAGAAAGGGAGGAGAGCCGCCGAGCAC
TTCTCCCTCTTCGCGCTTGACGGCGAGACGGGCGAGGTCCGCTGGAGCCA
CGGCGGGGGTGCTCATCACGGTGCGCAGGACAAGCAGAACGGCGGCGGCG
GCGGCGGCGGCGGGATCAGGGACTACGACTACTTCGACTTCGGCTTCGAC
CTCGACTACCCCGGCTTCGGCGACGACCTCCTCTACAACCTAACGGAGGG
TGCCGCAGCGGCCCCGGCGTTCGAGGGCCTCGCGGCCGTGGCCGGCGCCG
TCGGGGGCGGAGGCGGGCGGCGAGGGGAGTCGTATGCGGGAGGGGGCGGG
GGGGGGTGGGTGAGGGTCGTCCTCGCGAGGACGAGGGACGGGCTCGAGGC
GGTGGAGCTGTCCACGGGGAAGCCGCTCAGCGCGGTCGCGCTGCCCGCCG
CCGCGGGGACGGACGCCGGGGTGTACGTGGACCTGAACGGCGACGGCGTC
GTGGACCACGTCCAGAGGGGAGTCGTATGCGGGAGGGGGCGGGGGGGGGT
GGGTGAGGGTCGTCCTCGCGAGGACGAGGGACGGGCTCGAGGCGGTGGAG
CTGTCCACGGGGAAGCCGCTCAGCGCGGTCGCGCTGCCCGCCGCCGCGGG
GACGGACGCCGGGGTGTACGTGGACCTGAACGGCGACGGCGTCGTGGACC
ACGTCCAGGCGGTGGGCACGCGCGGAGGGCAAGGGTGGGGGCATCTACAC
GAGGGGGTGGCCATGGGCCATCTGTCCGAGGAGCCCACGCCCTCCCAGGC
GGTGGGCACGCGCGGAGGGCAAGGGTGGGGGCATCTACACGAGGGGGTGG
CCATGGGCCATCTGTCCGAGGAGCCCACGCCCTCCCAGCCGCAGCCGGCG
CGACGGTTTCTTCCCCCGTGCTACGCCCTCGCGGTGAGCGGCCTTCCCCC
TAGAGAGCAGCTCTTCAATGCCTCCCTTTGCCACGACGCCGGAGCTCTCT
TCGAAGTACAGCCGCAGCCGGCGCGACGGTTTCTTCCCCCGTGCTACGCC
CTCGCGGTGAGCGGCCTTCCCCCTAGAGAGCAGCTCTTCAATGCCTCCCT
TTGCCACGACGCCGGAGCTCTCTTCGAAGTACAGGAACGCCTTAGCAAGC
CCAACTCCCGCTCGTCCTCACGATCCCTGGACCTAGAGGTCGGAGCCGCA
TCGCCGGCCACCATCCCAAGAGACTCGGCGGGGGTGGCGGCGGCGGCGGC
CACGGGGGCCGCCACCGCCCGCTCGAGCTCTGGGGCAGGAAGGGGAGCAC
GTTCGGGAGGGGGAGGGGGAGGGGGAGGGGGGTGGGGAGAGGGTCCCGCG
CGCTTCGACGCGGTGTTTGCCGTGAGCAGTGGGGTCGTAAGCAGCTACGA
CGACGAGGGGCGGCTAAAGTGGCAGGATCGCCGCGGGCCCAAGTGGACCC
GGAAAGGAACGCCTTAGCAAGCCCAACTCCCGCTCGTCCTCACGATCCCT
GGACCTAGAGGTCGGAGCCGCATCGCCGGCCACCATCCCAAGAGACTCGG
CGGGGGTGGCGGCGGCGGCGGCCACGGGGGCCGCCACCGCCCGCTCGAGC
TCTGGGGCAGGAAGGGGAGCACGTTCGGGAGGGGGAGGGGGAGGGGGAGG
GGGGTGGGGAGAGGGTCCCGCGCGCTTCGACGCGGTGTTTGCCGTGAGCA
GTGGGGTCGTAAGCAGCTACGACGACGAGGGGCGGCTAAAGTGGCAGGAT
CGCCGCGGGCCCAAGTGGACCCGGAAAGCAGACACCGAAGGCGGAGACCC
CAGCAACGGGGGGGGCTACGTGGTCCCCTTCACCCTGGAGGTCGGCTGGC
CTGGTCGCGGCCGGGGAAGGATTATCAACCCTTCCCCTGGCGCCGAGGAG
CGAATTATAGTGGTGGGGCAGGTGAGAGAACGCAGGCCACAGATACGGTA
TGAACCACCAAGGCGAAGATTCAGGGCCAGAACAGGCCGGAAGTCGCCGC
GGGACCTCCCTTGACAGACACCGAAGGCGGAGACCCCAGCAACGGGGGGG
GCTACGTGGTCCCCTTCACCCTGGAGGTCGGCTGGCCTGGTCGCGGCCGG
GGAAGGATTATCAACCCTTCCCCTGGCGCCGAGGAGCGAATTATAGTGGT
GGGGCAGGTGAGAGAACGCAGGCCACAGATACGGTATGAACCACCAAGGC
GAAGATTCAGGGCCAGAACAGGCCGGAAGTCGCCGCGGGACCTCCCTTGA
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