mRNA_Ecto-sp9_F_contig10153.189.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10153.189.1
Unique NamemRNA_Ecto-sp9_F_contig10153.189.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10153.189.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG0_9PHAE)

HSP 1 Score: 325 bits (834), Expect = 1.690e-105
Identity = 199/232 (85.78%), Postives = 203/232 (87.50%), Query Frame = 1 
Query:    4 MLGAPLIGGGXXXXR-SGSASYDALFQGLVGSGCVAGLALLDASRGRPLYENRLDDRLPRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEVIGARGGGEGPGHRYGLVSPCEGQRLVAAVKSLTDDDDALCRKQEEQPLTCMGVPFRVFGGTPLGIYAVGPGRRVGLIVRALPRVGFLVVVYRRPHLPQQVVGEVEKFVDDFWAGTQGRAVRSPLP 696
            MLGAPL  GGXXXX  SGSASYDALFQGLVGSGC+AGLALLDASRGRPLYENRLDDRLPRP XXXXXXXXXXXXXXXXXXXXXX                    KEV+GARGGGEGPG R GLVS  EGQRLVAAVKSLTDDDDA+CRKQEEQPLTCMGVPFRVFGGTPLGIYAVGPGRRVGL+VRALPRVGFLVVVYRRPHLPQQVVGEVEKFVDDFWAGTQGRAVRSPLP
Sbjct:   65 MLGAPLTSGGXXXXAGSGSASYDALFQGLVGSGCIAGLALLDASRGRPLYENRLDDRLPRPPXXXXXXXXXXXXXXXXXXXXXXEDNKNDG-------------KEVVGARGGGEGPGQRDGLVSSSEGQRLVAAVKSLTDDDDAICRKQEEQPLTCMGVPFRVFGGTPLGIYAVGPGRRVGLVVRALPRVGFLVVVYRRPHLPQQVVGEVEKFVDDFWAGTQGRAVRSPLP 283
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10153.189.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.690e-10585.78protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10153contigEcto-sp9_F_contig10153:136..2827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_002620.1
Exons3
Model size1511
Cds size738
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10153.189.1prot_Ecto-sp9_F_contig10153.189.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10153 906..2824 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928210.6928046-UTR-Ecto-sp9_F_contig10153:135..9051622928210.6928046-UTR-Ecto-sp9_F_contig10153:135..905Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10153 136..905 -
1692277796.2817566-UTR-Ecto-sp9_F_contig10153:135..9051692277796.2817566-UTR-Ecto-sp9_F_contig10153:135..905Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10153 136..905 -
1622928210.7713103-UTR-Ecto-sp9_F_contig10153:2824..28271622928210.7713103-UTR-Ecto-sp9_F_contig10153:2824..2827Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10153 2825..2827 -
1692277796.312314-UTR-Ecto-sp9_F_contig10153:2824..28271692277796.312314-UTR-Ecto-sp9_F_contig10153:2824..2827Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10153 2825..2827 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928210.7070687-CDS-Ecto-sp9_F_contig10153:905..10501622928210.7070687-CDS-Ecto-sp9_F_contig10153:905..1050Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10153 906..1050 -
1692277796.2902389-CDS-Ecto-sp9_F_contig10153:905..10501692277796.2902389-CDS-Ecto-sp9_F_contig10153:905..1050Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10153 906..1050 -
1622928210.718719-CDS-Ecto-sp9_F_contig10153:1778..19781622928210.718719-CDS-Ecto-sp9_F_contig10153:1778..1978Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10153 1779..1978 -
1692277796.297625-CDS-Ecto-sp9_F_contig10153:1778..19781692277796.297625-CDS-Ecto-sp9_F_contig10153:1778..1978Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10153 1779..1978 -
1622928210.731031-CDS-Ecto-sp9_F_contig10153:2431..28241622928210.731031-CDS-Ecto-sp9_F_contig10153:2431..2824Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10153 2432..2824 -
1692277796.3048222-CDS-Ecto-sp9_F_contig10153:2431..28241692277796.3048222-CDS-Ecto-sp9_F_contig10153:2431..2824Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10153 2432..2824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10153.189.1

>prot_Ecto-sp9_F_contig10153.189.1 ID=prot_Ecto-sp9_F_contig10153.189.1|Name=mRNA_Ecto-sp9_F_contig10153.189.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=246bp
MLGAPLIGGGGGGGRSGSASYDALFQGLVGSGCVAGLALLDASRGRPLYE
NRLDDRLPRPPPAAGTAAAAAAATVAAAATATAAAAAAEQAEEAAGKDNK
DDEKEVIGARGGGEGPGHRYGLVSPCEGQRLVAAVKSLTDDDDALCRKQE
EQPLTCMGVPFRVFGGTPLGIYAVGPGRRVGLIVRALPRVGFLVVVYRRP
HLPQQVVGEVEKFVDDFWAGTQGRAVRSPLPPPPPPPPRSSSTRR*
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mRNA from alignment at Ecto-sp9_F_contig10153:136..2827-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10153.189.1 ID=mRNA_Ecto-sp9_F_contig10153.189.1|Name=mRNA_Ecto-sp9_F_contig10153.189.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2692bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10153:136..2827- (Ectocarpus species9 EcSCA_722f female)
CAGATGCTTGGGGCCCCTCTGATCGGCGGCGGCGGCGGCGGCGGCAGGAG
CGGCAGTGCGTCTTACGATGCGCTGTTCCAGGGACTTGTCGGCAGCGGCT
GCGTCGCGGGGCTGGCCCTGCTGGATGCCTCGCGAGGACGGCCGCTGTAT
GAGAACCGACTTGACGACCGGTTGCCCCGCCCTCCTCCGGCCGCCGGCAC
AGCTGCAGCAGCAGCAGCGGCAACAGTAGCTGCAGCAGCAACAGCAACAG
CAGCTGCAGCTGCGGCAGAACAAGCAGAAGAAGCAGCAGGGAAGGATAAC
AAGGATGACGAGAAGGAAGTAATAGGTGCAAGAGGTGGAGGAGAAGGGCC
CGGCCACCGGTACGGGTTGGTGTCTCCTTGCGAAGGACAGCGGCTGGTGA
GTAAAGCAAGGCGCGTCCAGTCATTCACTGCCTCTCTGCTGTTTGGCACC
CTTCTCTACCTCGAGGCGTGGCCGCCCTTTCGATGGTGACCCTCGGTAGT
GGGGAGTAGTACACCGACAGATTGCTTGAATCGATTGAAACTGAGATATG
TCTGTCTATTGGCCACCGCACGAGATGCTTCACCATCATCGCCACAACGG
AAGCCTACCCCCCCCCCCCCCACACACCTCTGGCAAAGCAGGAAGGAACC
ATTGGCCGTCGGTCATAATCGGTCCTCCTGTGGGAACAACGTTCTATCAG
CTAGTAAGGCATGACGCGTGGTCAATGGTCTAATAGCCAAGGCAAGAAAA
ACATGAGTACGCCCCCCCCCCCTCCCTCCGCCCCACGCCACCACCACCCC
CCTGCTACCGCTGCTTTCATCCTCGTTGACCCGACCTTTGACGCACAAGG
TGGCGGCCGTGAAAAGCTTGACGGATGATGATGACGCCCTCTGCCGCAAG
CAAGAAGAGCAGCCCCTGACGTGCATGGGGGTACCGTTCCGGGTATTCGG
CGGGACCCCCCTCGGCATCTACGCGGTCGGTCCCGGCAGGAGGGTCGGGT
TGATCGTGCGAGCCCTCCCTCGCGTCGGCTTCCTGGTTGTAGTCTACCGG
TATGTCTACAGCGGGCGGTGTGTGTTGTATTATATATTTACAGAAAGCGC
CCGCCACATTAGAACTTGGCGATTGATACTCCGGAGTATAGCCTATGAAC
TCTCCAAATGTAAGAACTTGAGCACCGTTCATTTGTGAGCTCGGTTAAGA
ACCCTAACCCCGACACTAACCCTACCGACACTAACATCTTATAGTGACCA
TTCGTAGCATGACCCCAGGAATACGGCAAAGAACCCCAGCCTCGACGAAA
AATAAAATAGAGGTTCTGAAGTGCGGGCGCGTTCTGTACTGCTGTGGCAC
ATGTGTACGGAAGAAGACGGCGGATCGTTTGCATGATATGTGCAGATTGG
TGTGTTGTCGGATCTCTGTTCATCGAGGCATCTGTGTGTGCTGTGTCTGG
GGTACGCTGACATTCACGCCGCATTCCATCCACGCGTCATTAACCCCCCC
ATGGAACAGTCAGGAGAAGATGGTAGCCTTGCAGGGGTATACGAAGTGGC
CTAAGCAGGCGAGAAGTGATATGGACAGGATCGGGAAAAAAACGCTTCAA
ATTTTGGGCTACCTTTGGCAAAGTAGGAAGGGCCATCGGTGATCGGTCCT
GCGGAAGAAACCCTCCGTCTCTCGAGGACGCGTGATCAATGGTCCGGTAG
TACGCCCCCCCCCCCCCCCTGACCCCCCTTCGTATTCCGTCCAACGCGTT
TGGTGTATGCGTGCGTTGCCGAGACAGGCGGCCTCATCTGCCTCAACAGG
TGGTGGGGGAAGTAGAGAAGTTCGTGGACGACTTCTGGGCAGGCACCCAA
GGCCGCGCGGTTAGATCGCCACTCCCACCACCACCACCACCACCACCCCG
ATCATCGTCAACACGGCGGTGATGATCACCACTATCGTCGTCATCGCTGA
GGGGCGGAACGGCTGGCGCTGCTGCTGCCGGTGCCTCCGTTGCTGCTGGT
GGAAAAGGCAGTGCCGACTTCTTACGACCGGAGAGGGATCTGCTGCGTCT
GCGGCAGCGACGTCTCAAGATTATGACGTTCGCTCGTGCCTAGACGTGAA
GGCATTGGGTTGGTTTCGCCCAGGAGCGATGATTTGCCGTCGTTTTGCGG
GTCTAGTATAATAGCGATCTCGAGGCAGCGGACGACGTGTAGCTCCCCCC
CCGTGTGTGAAACGTTTGGTAAGCCGGGATGCCAATTCAACCCATGGCAT
ATCGACTATATCTGGCATATAGAGTACCTGGGTTGGCACAGCACACGTAA
GGATGATGATCAGCTTCTGGTTCAGCCCTGTGAGATGTAGACCGGGCCGG
GGGATACCCGGCACATCGCTTCGTCCTGGTATTGTAGGGATGCGAGGTCT
ATGGTCTAACGACTTAGGCATGCGTTTTTATCGTGAGTACGCCCCCCGGT
TTTCTTGTTACAGTCAGAAGAATTTGAGATTGTTTGGGACGTGGTGGATT
CCAGACAGTCGGTGCCAACAAACTGTCGGTTGGTTGTTGTGTGTCGTGCG
CTGTGTAATTAGTCTTGTTGTGCGGTTTGTAGTTGTTGTTGTTGTGAGTT
GTGTGCTGTAGAATGAGTGATGAGTGTTGGGGCCCACCGTCGTAGCATAC
TCCGTACGCCCTCTGCTCGTGTGGGTGTGCGGTAGAGGGGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10153:136..2827-

>mRNA_Ecto-sp9_F_contig10153.189.1 ID=mRNA_Ecto-sp9_F_contig10153.189.1|Name=mRNA_Ecto-sp9_F_contig10153.189.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1476bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10153:136..2827- (Ectocarpus species9 EcSCA_722f female)
ATGCTTGGGGCCCCTCTGATCGGCGGCGGCGGCGGCGGCGGCAGGAGCGG
CAGTGCGTCTTACGATGCGCTGTTCCAGGGACTTGTCGGCAGCGGCTGCG
TCGCGGGGCTGGCCCTGCTGGATGCCTCGCGAGGACGGCCGCTGTATGAG
AACCGACTTGACGACCGGTTGCCCCGCCCTCCTCCGGCCGCCGGCACAGC
TGCAGCAGCAGCAGCGGCAACAGTAGCTGCAGCAGCAACAGCAACAGCAG
CTGCAGCTGCGGCAGAACAAGCAGAAGAAGCAGCAGGGAAGGATAACAAG
GATGACGAGAAGGAAGTAATAGGTGCAAGAGGTGGAGGAGAAGGGCCCGG
CCACCGGTACGGGTTGGTGTCTCCTTGCGAAGGACAGCGGCTGATGCTTG
GGGCCCCTCTGATCGGCGGCGGCGGCGGCGGCGGCAGGAGCGGCAGTGCG
TCTTACGATGCGCTGTTCCAGGGACTTGTCGGCAGCGGCTGCGTCGCGGG
GCTGGCCCTGCTGGATGCCTCGCGAGGACGGCCGCTGTATGAGAACCGAC
TTGACGACCGGTTGCCCCGCCCTCCTCCGGCCGCCGGCACAGCTGCAGCA
GCAGCAGCGGCAACAGTAGCTGCAGCAGCAACAGCAACAGCAGCTGCAGC
TGCGGCAGAACAAGCAGAAGAAGCAGCAGGGAAGGATAACAAGGATGACG
AGAAGGAAGTAATAGGTGCAAGAGGTGGAGGAGAAGGGCCCGGCCACCGG
TACGGGTTGGTGTCTCCTTGCGAAGGACAGCGGCTGGTGGCGGCCGTGAA
AAGCTTGACGGATGATGATGACGCCCTCTGCCGCAAGCAAGAAGAGCAGC
CCCTGACGTGCATGGGGGTACCGTTCCGGGTATTCGGCGGGACCCCCCTC
GGCATCTACGCGGTCGGTCCCGGCAGGAGGGTCGGGTTGATCGTGCGAGC
CCTCCCTCGCGTCGGCTTCCTGGTTGTAGTCTACCGGTGGCGGCCGTGAA
AAGCTTGACGGATGATGATGACGCCCTCTGCCGCAAGCAAGAAGAGCAGC
CCCTGACGTGCATGGGGGTACCGTTCCGGGTATTCGGCGGGACCCCCCTC
GGCATCTACGCGGTCGGTCCCGGCAGGAGGGTCGGGTTGATCGTGCGAGC
CCTCCCTCGCGTCGGCTTCCTGGTTGTAGTCTACCGGCGGCCTCATCTGC
CTCAACAGGTGGTGGGGGAAGTAGAGAAGTTCGTGGACGACTTCTGGGCA
GGCACCCAAGGCCGCGCGGTTAGATCGCCACTCCCACCACCACCACCACC
ACCACCCCGATCATCGTCAACACGGCGGTGAGCGGCCTCATCTGCCTCAA
CAGGTGGTGGGGGAAGTAGAGAAGTTCGTGGACGACTTCTGGGCAGGCAC
CCAAGGCCGCGCGGTTAGATCGCCACTCCCACCACCACCACCACCACCAC
CCCGATCATCGTCAACACGGCGGTGA
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