mRNA_Ecto-sp9_F_contig10150.188.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10150.188.1
Unique NamemRNA_Ecto-sp9_F_contig10150.188.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10150.188.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY90_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 5.220e-46
Identity = 103/126 (81.75%), Postives = 109/126 (86.51%), Query Frame = 2 
Query:    2 DGGGSPPAGAVAAETTSDGAEPSAEEGQQSSVTGDARQCSSANSSPVRSELRKAIAEE--RGSGSERSCS*DEDGEPQGTNRSSGEARVLTRGASDGCLDSSSSYRGNNQSNPASFKEIMQPMESA 373
            D GGSPPAGAVAAETTSD AEPSAEEGQQSSVTG ARQ SSANSSPVRS+LRKAIAEE   GSGSER CS  EDGEPQGTNRSSG ARVLTRGASDGC+DS SS RG N+  PAS ++I+QPMESA
Sbjct: 1010 DRGGSPPAGAVAAETTSDNAEPSAEEGQQSSVTGAARQSSSANSSPVRSKLRKAIAEEPGSGSGSERGCSQGEDGEPQGTNRSSGVARVLTRGASDGCIDSGSSNRGKNKRRPASLRKIIQPMESA 1135
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BLAST of mRNA_Ecto-sp9_F_contig10150.188.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W4_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.280e-21
Identity = 64/81 (79.01%), Postives = 68/81 (83.95%), Query Frame = 2 
Query:    2 DGGGSPPAGAVAAETTSDGAEPSAEEGQQSSVTGDARQCSSANSSPVRSELRKAIAEERG--SGSERSCS*DEDGEPQGTN 238
            D GGSP AGAVAAETTSDGAE SAE+GQQSSV G ARQCSSANSSPVRS+L KAIAEE G  SGSE++ S  EDGEPQG N
Sbjct:  197 DRGGSPSAGAVAAETTSDGAESSAEKGQQSSVIGAARQCSSANSSPVRSKLMKAIAEEPGFESGSEKNYSQGEDGEPQGKN 277
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10150.188.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized5.220e-4681.75protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.280e-2179.01protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10150contigEcto-sp9_F_contig10150:1941..3506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size375
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10150.188.1prot_Ecto-sp9_F_contig10150.188.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10150 1971..3392 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928210.6050158-UTR-Ecto-sp9_F_contig10150:1940..19701622928210.6050158-UTR-Ecto-sp9_F_contig10150:1940..1970Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10150 1941..1970 -
1692277796.2266178-UTR-Ecto-sp9_F_contig10150:1940..19701692277796.2266178-UTR-Ecto-sp9_F_contig10150:1940..1970Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10150 1941..1970 -
1622928210.6559455-UTR-Ecto-sp9_F_contig10150:3392..35061622928210.6559455-UTR-Ecto-sp9_F_contig10150:3392..3506Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10150 3393..3506 -
1692277796.2743177-UTR-Ecto-sp9_F_contig10150:3392..35061692277796.2743177-UTR-Ecto-sp9_F_contig10150:3392..3506Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10150 3393..3506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928210.620307-CDS-Ecto-sp9_F_contig10150:1970..20851622928210.620307-CDS-Ecto-sp9_F_contig10150:1970..2085Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10150 1971..2085 -
1692277796.2411296-CDS-Ecto-sp9_F_contig10150:1970..20851692277796.2411296-CDS-Ecto-sp9_F_contig10150:1970..2085Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10150 1971..2085 -
1622928210.6328948-CDS-Ecto-sp9_F_contig10150:2548..26401622928210.6328948-CDS-Ecto-sp9_F_contig10150:2548..2640Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10150 2549..2640 -
1692277796.251217-CDS-Ecto-sp9_F_contig10150:2548..26401692277796.251217-CDS-Ecto-sp9_F_contig10150:2548..2640Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10150 2549..2640 -
1622928210.6459446-CDS-Ecto-sp9_F_contig10150:3368..33921622928210.6459446-CDS-Ecto-sp9_F_contig10150:3368..3392Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10150 3369..3392 -
1692277796.2665586-CDS-Ecto-sp9_F_contig10150:3368..33921692277796.2665586-CDS-Ecto-sp9_F_contig10150:3368..3392Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10150 3369..3392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10150.188.1

>prot_Ecto-sp9_F_contig10150.188.1 ID=prot_Ecto-sp9_F_contig10150.188.1|Name=mRNA_Ecto-sp9_F_contig10150.188.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=77bp
MLIGQFITGALRTEESHRRRTGIGIGEELFLGRGRRTTRDQPQLWGSPST
DEGRIRRLPRQQFQLPRQQSEQPRLF*
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mRNA from alignment at Ecto-sp9_F_contig10150:1941..3506-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10150.188.1 ID=mRNA_Ecto-sp9_F_contig10150.188.1|Name=mRNA_Ecto-sp9_F_contig10150.188.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1566bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10150:1941..3506- (Ectocarpus species9 EcSCA_722f female)
GGATGGGGGAGGCTCGCCACCAGCTGGAGCAGTAGCTGCCGAAACCACCA
GCGACGGTGCCGAGCCGTCTGCAGAAGAAGGGCAGCAGTCATCGGTTACC
GGTGATGCTCGGCAATGCTCATCGGCCAATTCATCACCGTGAGGGACAGA
CCTCTCATTTTGTGACGTCACATGTTGTACTTTTTTTGTTGTATTTCTGT
GTTTTCCGCTCTATTCCGTGCATGAATGTTACGTTGTGATCTATTCATCC
CGGTCGTTTCGTTTGGCGTTTCTGAACGTGGTTTGCGCTTCCCGTTCTTG
CTTTGGTCCCCTCTGCTGCTTTTGGCCTTCCCCCTCTGCTTTATTTTGTG
CCTTGAGGTTTCAGTGCTGTTTGTTTTTCTGGACAATGCCCCCAACACAT
CCGCTTGTCCTTGCGGGAAAGCAGCTCCCGTTGCACTGGTTGGAGCTACG
AAATAGGACGTCGCTCACTGCTGACCGGGGATGACGGAGAGAATGGCTAC
AGCGTATTGCGCCACTCTCTCCGTCATCTAGGGCTGCATTGTTGTATTCC
TACGTTATCTTTGACTTGCTTGGTTCGGATCACCACTACGAATCTACCTT
GCAATCATCGGGCCTACATGATTGGCAGCGTGCCTGAGCGCTCTCGGTAT
CAGCATCGTATTTTGAAGAGGCTGAGCCCCGAATGGAGAACGGCAGTGAT
CGAAACCTTCGGAGAGGAGATTCTTGTAATTTTTTGTGGTCTGTTCGATC
AAAGAGGTTATACCATGCGGATCTCGTTGTATCCACTTTGAACTTAATGG
TAACATTCTTGTTCTCGCTTTTCATTTGCTCCTATTGTACCTTGGCATGT
TTTTTTCTTGGCACAGGGTGCGCTCCGAACTGAGGAAAGCCATCGCCGAA
GAACGGGGATCGGGATCGGAGAGGAGTTGTTCTTAGGACGAGGACGGCGA
ACCACAAGGCAAGAACGATGGAGGTTTGCTTTAGTAGTTCTTCCACGACA
GGAGAACGAAAACACCGTAGGGCAACGGTAGCAGCGAAAGTTCTTGGAAC
CATACTTGTAACGAAAGAAAATTGTATACTACGGCCTTGGGACGTTAGTC
GTCACGAGAGATAATCGTACTGCCATGGAAGTTCCCACTGGCGAGGTTGA
TTTCATCACGGCACGCTGAGCGATGGCCACGAGTAGCGTGATTGGATGGA
CTGGAGAAACCCGAGCCGACCATTTCTCACCTTAGTGGGCCGCCACACCA
TCGTTCACCATAGAAGCATGACATTTCTCCCCTAGTTCCTAGCGATATGG
TGCATTAAGATTTTAGTTGCCGGGTTTTAGATTTTTTGCCTCTTGTAATT
GCCCTCGAAATGAAGATTTTATCCCAATAATTAATTTCACTAGTGGCTTT
GCTGCGCCTTTTTACATCCAGGGACCAACCGCAGCTCTGGGGAAGCCCGA
GTACTGACGAGGGGCGCATCCGACGGCTGCCTCGACAGCAGTTCCAGCTA
CCGCGGCAACAATCAGAGCAACCCCGCCTCTTTTAAGGAGATCATGCAAC
CCATGGAGTCAGCCAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10150:1941..3506-

>mRNA_Ecto-sp9_F_contig10150.188.1 ID=mRNA_Ecto-sp9_F_contig10150.188.1|Name=mRNA_Ecto-sp9_F_contig10150.188.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10150:1941..3506- (Ectocarpus species9 EcSCA_722f female)
ATGCTCATCGGCCAATTCATCACCATGCTCATCGGCCAATTCATCACCGG
TGCGCTCCGAACTGAGGAAAGCCATCGCCGAAGAACGGGGATCGGGATCG
GAGAGGAGTTGTTCTTAGGACGAGGACGGCGAACCACAAGGGTGCGCTCC
GAACTGAGGAAAGCCATCGCCGAAGAACGGGGATCGGGATCGGAGAGGAG
TTGTTCTTAGGACGAGGACGGCGAACCACAAGGGACCAACCGCAGCTCTG
GGGAAGCCCGAGTACTGACGAGGGGCGCATCCGACGGCTGCCTCGACAGC
AGTTCCAGCTACCGCGGCAACAATCAGAGCAACCCCGCCTCTTTTAAGGA
CCAACCGCAGCTCTGGGGAAGCCCGAGTACTGACGAGGGGCGCATCCGAC
GGCTGCCTCGACAGCAGTTCCAGCTACCGCGGCAACAATCAGAGCAACCC
CGCCTCTTTTAA
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