mRNA_Ecto-sp9_F_contig1015.187.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1015.187.1 vs.
Match: Matrin-type (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUU5_ECTSI) HSP 1 Score: 815 bits (2106), Expect = 5.980e-295 Identity = 446/459 (97.17%), Postives = 447/459 (97.39%), Query Frame = 1
Query: 79 MSSSLLERARGFHEDLEIYERGIIEQLETKPRTQKERVAQQHRIANLCDGSTERSQGLHEIYEDTDGSMREEVASMRGQKVMDTFYDRLKETWSYHTHHPGLPVTFGPNLEAETEVKVQFSGEELYGKFFDLHGMFVRWVNLPQCKDKQLDYSQFLQALGRFEDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLDEVLGDTDSSFEEAWEAGTLPGWTSGRAAXXXXXXXXXXXXXAAAPRVLDLKKFHDADELRALGMDRLKEALQAIGLKCGGTLEQRADRLFSVKGKKPEEIDQKLKAKGKKEGKGVSNGVAPGHGADANANGTAGXXXXXXXX-EERRKQLAALETKVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNEXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 1452
MSSSLLERARGFHEDLEIYERGII+QLETKPRTQKERVAQQHRIANLCDGSTERSQGLHEIYEDTDGSMREEVASMRGQKVMDTFYDRLKETWSYHTHHPGLPVTFGPNLEAETEVKVQFSGEELYGKFFDLHGMFVRWVNLPQCKDKQLDYSQFLQALGRFEDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLDEVLGDTDSSFEEAWEAGTLPGWTSGRAAXXXXXXXXXXXXXAAAPRVLDLKKFHDADELRALGMDRLKEALQAIGLKCGGTLEQRADRLFSVKGKKPEEIDQKLKAKGKKE APGHGAD NANG A XXXXXXXX EERRKQLAALETKVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNEXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR
Sbjct: 1 MSSSLLERARGFHEDLEIYERGIIDQLETKPRTQKERVAQQHRIANLCDGSTERSQGLHEIYEDTDGSMREEVASMRGQKVMDTFYDRLKETWSYHTHHPGLPVTFGPNLEAETEVKVQFSGEELYGKFFDLHGMFVRWVNLPQCKDKQLDYSQFLQALGRFEDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLDEVLGDTDSSFEEAWEAGTLPGWTSGRAAXXXXXXXXXXXXXAAAPRVLDLKKFHDADELRALGMDRLKEALQAIGLKCGGTLEQRADRLFSVKGKKPEEIDQKLKAKGKKEXXXXXXXXAPGHGADPNANGPAXXXXXXXXXKEERRKQLAALETKVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNEXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 459
BLAST of mRNA_Ecto-sp9_F_contig1015.187.1 vs.
Match: Matrin-type (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE40_9STRA) HSP 1 Score: 492 bits (1267), Expect = 1.710e-167 Identity = 265/470 (56.38%), Postives = 327/470 (69.57%), Query Frame = 1
Query: 88 SLLERARGFHEDLEIYERGIIEQLETKPRTQKERVAQQHRIANLCDGSTERSQGLHEIYEDTDGSMREEVASMRGQKVMDTFYDRLKETWSYHTHHPGLPVTFGPNLEAETEVKVQFSGEELYGKFFDLHGMFVRWVNLPQCKDKQLDYSQFLQALGRFEDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLDEVLGDTDSSFEEAWEAGTLPGWTSGRAAXXXXXXXXXXXXXAAAP------RVLDLKKFHDADELRALGMDRLKEALQAIGLKCGGTLEQRADRLFSVKGKKPEEIDQKLKAKG--KKEGKGVSNGVAP----GHGADA-NANG--TAGXXXXXXXXEERRKQLAALETKVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNEXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 1452
SLLERAR FHED+E YE II++LE KP+T KERV QQHR+ANL + RS+ L IYED D SM++EVA+MRG+ + FYDR K +WSYH +P LPV GPN++ E E KV FSGEEL+GK FDLH ++ RWVN PQC DK+LDY +L L D+PE+ K R K YAG++ADL YL GFL RTQPLVD DE++ + ++ F++AWEAG + GW A AAAP R LDL +H A++L LG+DRLKEAL+A+GLKCGGTL+QRA+RL +VKGKKP EID KL AKG +K S+G A G+GADA +A+G T G + R+ AA E +V+A LE +D E+T++QV+KK TRTVEERD EI +EE G LPE + D++GPIYNPLNLPLGWDGKPIP+WLYKLHGLGVE+KCEICGDFSY GRR
Sbjct: 2 SLLERARAFHEDIETYEMAIIKELEAKPKTNKERVYQQHRVANLLSQAVARSKELDAIYEDKDDSMKQEVAAMRGRDALKNFYDRAKSSWSYHARYPDLPVNTGPNIDEEKEPKVTFSGEELFGKHFDLHDLYARWVNSPQCSDKRLDYGAYLAGLAALGDVPERAK-RSKGYAGYVADLEAYLRGFLARTQPLVDADEIVKEAEAEFDKAWEAGRVKGWPRVSKAAPHK---------AAAPGGGLTARHLDLSLYHAAEDLMPLGLDRLKEALEALGLKCGGTLQQRAERLMAVKGKKPSEIDPKLLAKGAGQKRNGPPSDGPAAKRQNGNGADAADASGAKTNGVPNGKSDGGDWRRSTAAAEARVRAFLEALSDVWEATRKQVEKKQTRTVEERDAEIADEEAGTLPEVGDADEEDSDDDGPIYNPLNLPLGWDGKPIPFWLYKLHGLGVEYKCEICGDFSYWGRR 461
BLAST of mRNA_Ecto-sp9_F_contig1015.187.1 vs.
Match: Matrin-type (domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DC70_9STRA) HSP 1 Score: 348 bits (893), Expect = 4.350e-111 Identity = 217/479 (45.30%), Postives = 287/479 (59.92%), Query Frame = 1
Query: 79 MSSSLLERARGFHEDLEIYERGIIEQLETKPRTQKERVAQQHRIANLCDGSTERSQGLHEIYEDTDGSMREEVASMRGQKVMDTFYDRLKETWSYHTHHPGLPVTFGPNLEAETEVKVQFSGEELYGKFFDLHGMFVRWVNLPQCKDKQLDYSQFLQALGRFEDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLDEVL-GDTD-----------SSFEEAWEAGTLPGWTSGRAAXXXXXXXXXXXXXAAAPRVLDLKKFHDADELRALGMDRLKEALQAIGLKCGGTLEQRADRLFSVKGKKPEEIDQKLKA-KGKKEGKGVSNGVAPGHGADANANGTAGXXXXXXXXEERRKQLAALETKVKALL-EVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFN-------EXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 1452
MS LERAR HED+E YE I+ LE KPRT KERV QQHR++NL + RS+ L IYED G+M+EE+A++RG+ +FY R+ YH HP +PV P ++ E E +V FSGEE++GK+ DL + + LPQ + DY +L L F +P +K A+A ++ +L YL F+ RTQPL++++E+L G+ D ++FE W+AG LPG + +DL+ F A EL +GMDRLK L+A+G+KCGGTLE+RA RLF+ KGKK EEID KL A GKK K NG ++ N G E+ +KQ A E ++ L+ EV + +E+TK+ V+KK TRT EE + E+++EE+G LP XXXXXX GPIYNPLNLPLG+DGKPIPYWLYKLHGLGVE+KCEICG+ SY GRR
Sbjct: 1 MSGLTLERARANHEDIEAYEAAIVAILEDKPRTAKERVWQQHRVSNLIEQIQGRSKDLEGIYEDLHGTMKEELATLRGRDAFPSFYARVDHAKEYHQKHPDVPVKHHPPVQDEAEPRVCFSGEEVFGKYLDLQASHMEFYALPQTP--KWDYQTYLSRLADFSVVPAGKK--NAAWARYVHNLYNYLLSFIQRTQPLLNVEEILDGNVDGGEEGATKKAEAAFEALWQAGKLPG------GWPVPAQGGGEEKGTENTKEVDLRGFRTAKELEVVGMDRLKAGLKALGMKCGGTLEERAARLFATKGKKKEEIDPKLLAGNGKKXSKAEGNGPT----SNGNGQGVGTDKEGGKGGEDAKKQCARWEFRIDLLVKEVLREVVEATKKFVEKKQTRTKEETETELRQEEEGLLPGLRGEGXXXXXXXXXXXXXXGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRR 465
BLAST of mRNA_Ecto-sp9_F_contig1015.187.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3N3_9STRA) HSP 1 Score: 334 bits (857), Expect = 4.850e-106 Identity = 200/468 (42.74%), Postives = 277/468 (59.19%), Query Frame = 1
Query: 79 MSSSLLERARGFHEDLEIYERGIIEQLETKPRTQKERVAQQHRIANLCDGSTERSQGLHEIYEDTDGSMREEVASMRGQKVMDTFYDRLKETWSYHTHHPGLPVTFGPNLEAETEVKVQFSGEELYGKFFDLHGMFVRWVNLPQCKDKQLDYSQFLQALGRFEDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLDEVLGDTDSSFEEAWEAGTLPGWTSGRAAXXXXXXXXXXXXXAAAPRVLDLKKFHDADELRALGMDRLKEALQAIGLKCGGTLEQRADRLFSVKGKKPEEIDQKLKAKGKKEGKGVSNGVAPGHGADANANGTAGXXXXXXXXEERRKQLAALETKVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPE----------FNEXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 1452
MSS+LLE+AR E E YE+ I EQL +KP+T K++V QQH IANL ++S E+ +D DGS +EE+ +M+G +FY+ LK+T Y+ P + +LEA+ E FSGEE++GK+ DLH + R N+ Q + Y +L A F +P K+ G AYA +L DL +YL F R QPLVD + + ++F+EAWE GT+PGW++G A AA R +D+ H A +L ALG+ RLKE L+A+G+KCGG+L RA+RLFSVKG ++I + L AK K+ K +A T G + + +A E V ++E D +E+TKR V+K+ T+ VEER E++EEE G + + ++ XXX ++GP+YNPLNLPLGWDGKPIP+WLYKLHGLGVE+KCEICG+ SY GRR
Sbjct: 1 MSSTLLEQARQALEYSEAYEKAIGEQLSSKPKTTKQQVWQQHHIANLMTCIKKQSGTALEVVKDGDGSFKEELETMKGANAFGSFYESLKQTREYYMRFPNIKPQQALSLEADMECTTVFSGEEVFGKYLDLHALHERSCNMKQFGPTE--YLDYLAAFSDFSKVPSGAKM-GAAYAEYLKDLLDYLESFFQRAQPLVDFASISSERSTAFQEAWEKGTVPGWSAGSAGTEAASTSN-----TAAKRPVDMSSMHSAQDLEALGLQRLKEGLEALGMKCGGSLSDRAERLFSVKGVAQKDIPKNLLAKAAKKRK-------------RDAAETGG---------DNGRAVAEREFGVGFMVEQLLDVVEATKRHVEKRQTQLVEERAAELEEEEFGTMADQIAGEDGTGGLDDEEDXXXXDDGPLYNPLNLPLGWDGKPIPFWLYKLHGLGVEYKCEICGNQSYWGRR 438
BLAST of mRNA_Ecto-sp9_F_contig1015.187.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HV93_9STRA) HSP 1 Score: 322 bits (826), Expect = 1.620e-101 Identity = 201/465 (43.23%), Postives = 275/465 (59.14%), Query Frame = 1
Query: 79 MSSSLLERARGFHEDLEIYERGIIEQLETKPRTQKERVAQQHRIANLCDGSTERSQGLHEIYEDTDGSMREEVASMRGQKVMDTFYDRLKETWSYHTHHPGLPVTFGPNLEAETEVKVQFSGEELYGKFFDLHGMFVRWVNLPQ-CKDKQLDYSQFLQALGRFEDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLDEVLGDTDSSFEEAW---EAGTLPGWTSGRAAXXXXXXXXXXXXXAAAPRVLDLKKFHDADELRALGMDRLKEALQAIGLKCGGTLEQRADRLFSVKGKKPEEIDQKLKAKGKKEGKGVSNGVAPGHGADANANGTAGXXXXXXXXEERRKQLAALETKVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNEXXXXXXD---EEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 1452
MS+SLLE+AR +E+ E YER I +QL+TKP+T K+RV QQH I NL +S+ + I++D D + ++E+ SM+G+ +FY+ L+ET YH +P L N++AE E K QFSG EL+GK+ DL R N+ + + ++YSQFL F +P + K R +Y + DL YL F+ RTQPLV L+E+ + D FE+AW EA + T +A+ R+LDL KFH A E+ ALG+ RLK+ A+GLKCGG +RA+RL+ KG P++ K+ A K++ G S+ D A+ + R +A E ++ L + D L++ +R VDKK T+ VEERD E EEE GAL ++ XXXX +EGP+YNPLNLPLGWDGKPIPYWLYKLHGLGVE+KCEICG+ SY GRR
Sbjct: 1 MSASLLEQARSSYENTEAYERTIGKQLDTKPKTNKQRVWQQHHIKNLIKHIQVQSKVVVAIHQDADETFKDELESMKGRNAFGSFYESLRETKEYHQRNPYLMPQNELNMDAEMECKAQFSGPELFGKYLDLVPFHARATNMKKHFGPEPVEYSQFLLDFHEFSKVPAELK-RAASYVSYTKDLCAYLMAFMARTQPLVSLEEMATEADEVFEKAWKDTEAEKVE--TENKASNYQEG------------RLLDLTKFHSAKEIEALGLARLKDGCLALGLKCGGGAGERAERLWRTKGLTPDQYPSKILASRKRKRDGKSD--------DKEAS-------------DSRHDVARAEFRISFLCDQMADVLDAPRRYVDKKQTQLVEERDAEFAEEESGALAALDDEEXXXXXXXXDEGPLYNPLNLPLGWDGKPIPYWLYKLHGLGVEYKCEICGNMSYWGRR 429
BLAST of mRNA_Ecto-sp9_F_contig1015.187.1 vs.
Match: Subunit (3 of splicing factor 3A n=4 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MTJ1_9CHLO) HSP 1 Score: 307 bits (787), Expect = 1.360e-95 Identity = 194/471 (41.19%), Postives = 261/471 (55.41%), Query Frame = 1
Query: 79 MSSSLLERARGFHEDLEIYERGIIEQLETKPRTQKERVAQQHRIANLCDGSTERSQGLHEIYEDTDGSMREEVASM--RGQKVMDTFYDRLKETWSYHTHHPGLPVTFGPNLEAE---TEVKVQFSGEELYGKFFDLHGMFVRWVNLPQCKDKQLDYSQFLQALGRFEDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLDEVLGDTDSSFEEAWEAGTLPGWTS-GRAAXXXXXXXXXXXXXAAAPRVLDLKKFHDADELRALGMDRLKEALQAIGLKCGGTLEQRADRLFSVKGKKPEEIDQKLKAKGKKEGKGVSNGVAPGHGADANANGTAGXXXXXXXXEERR----KQLAALETKVKALLEVQTDTLESTKRQVDKKHTRTVEERD---QEIQEEEQGALPEFNEXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 1452
MSS+LLER R HE++E ER + + T ++ R+AQ HR+ DG +RS+ L IY+D DGS ++E+ M Q+V FY+RLKE YH HP L + E E + +V FSGEE G+F DLH + + N P+ +K L Y FL F IP+ KL + Y +L DL EYL GF R+QPL L L + F+E WE G + W G A P+++DL+ F A +L A+G DR+KEAL A+GLK GG+L Q+A+RL + KGK EE+D+KL AKGKK P A+ +RR K +A LE +++AL+++ TL TK+QV+KK T T EE +E+Q+ QG + + + IYNPLN+P+G+DGKPIPYWLYKLHGL EFKCEICG+FSY GRR
Sbjct: 1 MSSTLLERTRALHEEIERSERLVAKDFHTDAKSHTSRLAQNHRVFQCVDGIRKRSRDLLTIYDDEDGSRKDELEGMAAENQEVYSLFYERLKEARDYHRRHPDLELASVDKDEEEFLKSRPRVDFSGEEAQGRFLDLHDVHRSFTNAPKFGNKDLSYLDFLGMFCDFRSIPKPSKLN-QEYKAYLEDLDEYLVGFYGRSQPLASLGAPLAAVEKEFDEMWERGEVEDWEDKGLGASTSQVKDN--------PKLIDLEDFESAGDLEAVGGDRIKEALVALGLKAGGSLSQKAERLMATKGKALEELDRKLFAKGKK----------PVRNAEE---------------AQRRLSLSKAIALLECRIRALMQLMEKTLSDTKKQVEKKATSTYEELVADMEELQDRGQGDDQGGDGTDNEDDENDNIIYNPLNIPVGFDGKPIPYWLYKLHGLNQEFKCEICGNFSYWGRR 437
BLAST of mRNA_Ecto-sp9_F_contig1015.187.1 vs.
Match: Matrin-type (domain-containing protein n=6 Tax=Citrus TaxID=2706 RepID=A0A067DVA8_CITSI) HSP 1 Score: 300 bits (768), Expect = 7.400e-93 Identity = 189/468 (40.38%), Postives = 263/468 (56.20%), Query Frame = 1
Query: 79 MSSSLLERARGFHEDLEIYERGIIEQLETKPRTQKERVAQQHRIANLCDGSTERSQGLHEIYEDTDGSMREEVASMRGQ-----KVMDTFYDRLKETWSYHTHHPGLPVTFGPNLEAETEVK----VQFSGEELYGKFFDLHGMFVRWVNLPQCKDKQLDYSQFLQALGRFEDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLDEVLGDTDSSFEEAWEAGTLPGW-TSGRAAXXXXXXXXXXXXXAAAPRVLDLKKFHDADELRALGMDRLKEALQAIGLKCGGTLEQRADRLFSVKGKKPEEIDQKLKAKGKKEGKGVSNGVAPGHGADANANGTAGXXXXXXXXEERRKQLAALETKVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNEXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 1452
MSS+LLE R HE++E ER +++ L+T+P + K+R+ Q HR+ N+ D T+ ++ L EIY D D + ++E+A++ GQ V +FYDRLKE YH HP V + + E +K V+FSGEE YG++ DLH ++ +++N K+++YS +L R +IP + K+ + Y ++ L EYL F RT+PL DLD + + FEE W TL GW T G+ A LDL + +EL +G +RLKE L A GLK GGTL+QRA+RLF K +++D+K AKG + GK NGVAP N K +A +E K+K L ++ ++T+E T + V KK T EE + E +E + DEE IYNPL LP+GWDGKPIPYWLYKLHGLG EFKCEICG++SY GRR
Sbjct: 1 MSSTLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENLLKEEPLVEFSGEEAYGRYLDLHELYNQYINSKF--GKEIEYSAYLDVFSRPHEIPRKLKMT-RQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQE----------NGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGAR-GK-EQNGVAPATQEVGNL-----------------KDIALMEAKMKKLCDLLSETIERTIQNVQKKQALTYEEMEAEREEXXXXXXXXXD-------DEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRR 429
BLAST of mRNA_Ecto-sp9_F_contig1015.187.1 vs.
Match: Matrin-type (domain-containing protein n=3 Tax=Heliantheae alliance TaxID=911341 RepID=A0A5N6NG43_9ASTR) HSP 1 Score: 298 bits (763), Expect = 3.890e-92 Identity = 188/466 (40.34%), Postives = 263/466 (56.44%), Query Frame = 1
Query: 79 MSSSLLERARGFHEDLEIYERGIIEQLETKPRTQKERVAQQHRIANLCDGSTERSQGLHEIYEDTDGSMREEVASMRGQK-----VMDTFYDRLKETWSYHTHHPG---LPVTFGPNLEAETEVKVQFSGEELYGKFFDLHGMFVRWVNLPQCKDKQLDYSQFLQALGRFEDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLDEVLGDTDSSFEEAWEAGTLPGWTSGRAAXXXXXXXXXXXXXAAAPRVLDLKKFHDADELRALGMDRLKEALQAIGLKCGGTLEQRADRLFSVKGKKPEEIDQKLKAKGKKEGKGVSNGVAPGHGADANANGTAGXXXXXXXXEERRKQLAALETKVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNEXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 1452
MSS+LLE R HED+E ER I++ L+ +P T K+R+AQ HR+ ++ D T + L EIYED D + ++E+A++ GQ V FYDRLKET YH HP L T E E +V+FSGEE G++ D+H ++ ++N K++DY+ +L+ + + IP + KL + Y +L+ + EYL FL RT+PL DLD + + FEE W +G + G + LDL + DEL LG ++LKEAL A+GLK GGT++QRA+RLF K E++D+K AKG + G + VA H D KQ+A +E K++ L E+ ++ + TK V+KK + EE D E ++EE +P+ DE+ IYNPL LP+GWDGKPIPYWLYKLHGLG EFKCEICG++SY GRR
Sbjct: 1 MSSTLLELTRAAHEDVERLERLIVKDLQNEPATNKDRLAQSHRVRHMIDQITSTTHKLVEIYEDKDSARKDEIAALGGQNATGTNVFSAFYDRLKETREYHRRHPSARVLDTTDEYEQWLEEEPQVEFSGEEASGRYLDMHELYNDYINSKF--GKKIDYTAYLEVFSQPQLIPRKLKLT-RQYKEYLSKMTEYLVYFLERTEPLQDLDRLFSKVTTEFEEHWASGKVDGCKD---------EAQENGYASDQNASLDLDYYRTVDELIELGPEKLKEALGALGLKTGGTVQQRAERLFLTKHTPLEKLDKKHFAKGAQR-PGQNGAVAAQHQTDD------------------LKQIALMEVKIEKLCEILSEKIMRTKENVEKKQAQNYEELDAEREDEE---VPDIESD-----DEDQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRR 427
BLAST of mRNA_Ecto-sp9_F_contig1015.187.1 vs.
Match: splicing (factor SF3a60 homolog n=2 Tax=Proteaceae TaxID=4328 RepID=UPI001C4E4908) HSP 1 Score: 297 bits (760), Expect = 1.120e-91 Identity = 187/466 (40.13%), Postives = 261/466 (56.01%), Query Frame = 1
Query: 79 MSSSLLERARGFHEDLEIYERGIIEQLETKPRTQKERVAQQHRIANLCDGSTERSQGLHEIYEDTDGSMREEVASMRGQ-----KVMDTFYDRLKETWSYHTHHP-GLPVTFGPNLEA--ETEVKVQFSGEELYGKFFDLHGMFVRWVNLPQCKDKQLDYSQFLQALGRFEDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLDEVLGDTDSSFEEAWEAGTLPGWTSGRAAXXXXXXXXXXXXXAAAPRVLDLKKFHDADELRALGMDRLKEALQAIGLKCGGTLEQRADRLFSVKGKKPEEIDQKLKAKGKKEGKGVSNGVAPGHGADANANGTAGXXXXXXXXEERRKQLAALETKVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNEXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 1452
MSS+LLE R HE++E ER I++ L+ +P + +ER+ Q HR+ N+ D ++ L+EIYED D + ++E+A++ GQ V +FYDRLKE YH HP V G E + E V+FSGEE +G++ DLH ++ +VN + ++YS +L + IP KL + Y +L L EYL F R +PL DLD V ++ +EE W G + GW + +A V+DL + +EL +G +RLKEAL A+GLK GGT++QRA+RLF K E++D+K AK +S GV + N N + + K++A +E K+K L E+ +T+ TK V+KK T EE + E +EEE A E +E E+ IYNPL LP+GWDGKPIPYWLYKLHGLG EFKCEICG+ SY GRR
Sbjct: 1 MSSTLLEVTRAGHEEVERLERLIVKDLQREPASNRERLFQSHRVRNMIDSIISTTEKLNEIYEDKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPVARVVDAGEEYEELLKQEPHVEFSGEEAFGRYLDLHELYNEYVNSKF--GEPIEYSAYLDVFAQPHKIPRNHKLT-RQYREYLEHLLEYLIYFFQRKEPLQDLDRVFSKVEADYEELWVDGKIQGWEN---------KSQENGHASAQDSVIDLDYYSSVEELIEVGPERLKEALAALGLKAGGTVQQRAERLFLTKHTPLEQLDKKHFAK-------LSRGV------EQNGNAASSQQM------DNSKEIALIEAKIKHLCELLYETILQTKENVEKKQALTYEEMEAEREEEEVQADTESDE-------EDQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRR 428
BLAST of mRNA_Ecto-sp9_F_contig1015.187.1 vs.
Match: Splicing (factor 3A subunit 3 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U481_CHLSO) HSP 1 Score: 297 bits (760), Expect = 1.220e-91 Identity = 196/477 (41.09%), Postives = 256/477 (53.67%), Query Frame = 1
Query: 79 MSSSLLERARGFHEDLEIYERGIIEQLETKPR-TQKERVAQQHRIANLCDGSTERSQGLHEIYEDTDGSMREEVASMR---GQKVMDTFYDRLKETWSYHTHHPGLPVTFGPNLEA--ETEVKVQFSGEELYGKFFDLHGMFVRWVNLPQCKDKQLDYSQFLQALGRFEDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLDEVLGDTDSSFEEAWEAGTLPGWT------SGRAAXXXXXXXXXXXXXAAAPRVLDLKKFHDADELRALGMDRLKEALQAIGLKCGGTLEQRADRLFSVKGKKPEEIDQKLKAKGKKEGKGVSNGVAPGHGADANANGTAGXXXXXXXXEERRKQLAA------LETKVKALLEVQTDTLESTKRQVDKKHTRTVEE-RDQEIQEEEQGALPEFNEXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRR 1452
M+S+LLE R H+D+E ER I++ T+P + K+++ Q HR+ + D ERS+ L IY+D DG+ +EE+A +R V FY+RLKE YH P +T N EA V FSGEE G+F DLH +F + N KQ+DY ++ ++ FE IP ++L G+ Y +L L YL F RTQPL L ++ F E W+AG + GW SG AA + LDL F ADEL LG +RLKEAL A+G+KCGGTL QRA+RL KGKK EE+D+ L AKG AP E+R +Q AA LE K L E+ LE TK +++KK +T EE ++ + EE+ A P +E +E+ +YNPL LPLGWDGKPIPYWLYKLHGL +EFKCEICG SY GRR
Sbjct: 1 MASTLLEETRQAHDDVERLERLIVKDFATQPAGSHKDKLLQSHRVRAMLDSIQERSRKLIRIYDDEDGARKEEIAQLRLGGADNVFSNFYERLKEVREYHRKFPNDDLTEAENDEALLSEAPAVPFSGEEAMGRFLDLHELFHTYTNSKF--GKQVDYYTYVCSIAEFEAIPRAQRL-GRPYREYLQALVAYLESFYERTQPLSQLSRQYEKLEAEFAEKWQAGQVAGWEDRGEGGSGAAAAAD-----------GSSGALDLDAFDSADELEMLGAERLKEALSALGMKCGGTLRQRAERLMQAKGKKLEELDRSLFAKG----------AAP---------------AAVQSTEQRERQAAAARAVALLEAKASKLCEMLGSVLEDTKGRIEKKQAQTYEELMAEQAEAEEEAAAPAGDESE----EEDEFVYNPLKLPLGWDGKPIPYWLYKLHGLNLEFKCEICGGASYWGRR 434 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1015.187.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1015.187.1 >prot_Ecto-sp9_F_contig1015.187.1 ID=prot_Ecto-sp9_F_contig1015.187.1|Name=mRNA_Ecto-sp9_F_contig1015.187.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=484bp CCSERKVVRVQATGQLGVSGAWLIEAMSSSLLERARGFHEDLEIYERGIIback to top mRNA from alignment at Ecto-sp9_F_contig1015:20956..27145+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1015.187.1 ID=mRNA_Ecto-sp9_F_contig1015.187.1|Name=mRNA_Ecto-sp9_F_contig1015.187.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=6190bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1015:20956..27145+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1015:20956..27145+ >mRNA_Ecto-sp9_F_contig1015.187.1 ID=mRNA_Ecto-sp9_F_contig1015.187.1|Name=mRNA_Ecto-sp9_F_contig1015.187.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2904bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1015:20956..27145+ (Ectocarpus species9 EcSCA_722f female)back to top |