mRNA_Ecto-sp9_F_contig1015.186.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1015.186.1
Unique NamemRNA_Ecto-sp9_F_contig1015.186.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1015.186.1 vs.
Match: AMMECR1 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU4_ECTSI)

HSP 1 Score: 458 bits (1179), Expect = 7.670e-153
Identity = 232/245 (94.69%), Postives = 235/245 (95.92%), Query Frame = 1 
Query:   64 MATALVGSPTSAGSSRAEQERQFSRDGGSSSS--GLQQQADAEPPAETLQATREMCAYCFDVIIAHFNNIESPPPSFSTSYVCGMFVTWDKHEHGTESLRGCIGTLHPQAISQIRDYTYSSALNDRRFAPIEMSELASLDVSVSLLVKYEPAQHWEDWEIGVHGIVIKFNDDRGSSYSATFLPEVAAEQGWSRKVTLSRLVRKAGYKQVVDRAFLAGVEVTRYQSSKHKLPYQEYLEMRRLAQPY 792
            MATALVGSPTSAGSSRAEQERQFSRDGG      GLQQQADA PPAETLQATREMCAYCFDVIIAHFNNIE PPPSFST YVCGMFVTWDKHEHGTESLRGCIGTLHPQAISQ+RDYTYSSALNDRRFAPIEM ELASLDVSVSLLVKYEPAQHWEDWEIGVHGIVIKF+DDRGSSYSATFLPEVAAEQGWSRKVTLSRLVRKAGYK+VVDRAFLAGVEVTRYQSSKHKLPYQEYLEMRRLAQPY
Sbjct:    1 MATALVGSPTSAGSSRAEQERQFSRDGGXXXXXXGLQQQADAGPPAETLQATREMCAYCFDVIIAHFNNIEPPPPSFSTRYVCGMFVTWDKHEHGTESLRGCIGTLHPQAISQLRDYTYSSALNDRRFAPIEMPELASLDVSVSLLVKYEPAQHWEDWEIGVHGIVIKFDDDRGSSYSATFLPEVAAEQGWSRKVTLSRLVRKAGYKRVVDRAFLAGVEVTRYQSSKHKLPYQEYLEMRRLAQPY 245
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1015.186.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N2W4_HETAK)

HSP 1 Score: 226 bits (577), Expect = 6.160e-65
Identity = 109/191 (57.07%), Postives = 135/191 (70.68%), Query Frame = 1 
Query:  205 QATREMCAYCFDVIIAHFNNIESPPPSFSTSYVCGMFVTWDKHEHGTES-LRGCIGTLHPQAISQIRDYTYSSALNDRRFAPIEMSELASLDVSVSLLVKYEPAQHWEDWEIGVHGIVIKFNDDRGSSYSATFLPEVAAEQGWSRKVTLSRLVRKAGYKQVVDRAFLAGVEVTRYQSSKHKLPYQEYLEMR 774
            +A++EMCAYCFDV+I  F+  E   P F T + C  FVTW+K E G +  LRGCIGTL P+ ++ ++DYT+SSA  DRRF P+  +EL +L V+VSLLV+YEPA  W DWE+GVHGI+I F   R   YSAT+LPEVA EQGW     +S LVRKAGY+  VD A L  +EVTRYQSSK KL Y EY  +R
Sbjct:   18 KASQEMCAYCFDVLICAFDGTEPSDPRFPTDFECPFFVTWNKTERGGQRRLRGCIGTLSPRPVADLKDYTHSSAFRDRRFEPVGRAELGALQVAVSLLVRYEPAADWRDWEVGVHGILINFYSSRNEHYSATYLPEVAPEQGWGHLEAVSSLVRKAGYRGRVDDALLDSLEVTRYQSSKAKLDYAEYCNLR 208
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1015.186.1 vs.
Match: AMMECR1 (domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBM3_GLOUD)

HSP 1 Score: 212 bits (539), Expect = 8.130e-60
Identity = 101/190 (53.16%), Postives = 136/190 (71.58%), Query Frame = 1 
Query:  208 ATREMCAYCFDVIIAHFNNIESPPPSFSTSYVCGMFVTWD-KHEHGTESLRGCIGTLHPQAISQIRDYTYSSALNDRRFAPIEMSELASLDVSVSLLVKYEPAQHWEDWEIGVHGIVIKFNDDRGSSYSATFLPEVAAEQGWSRKVTLSRLVRKAGYKQVVDRAFLAGVEVTRYQSSKHKLPYQEYLEMR 774
            A+  M  YCFD + AHF+  + P PSF       +FVTW+ + +HGT+ LRGCIGTL P  +  +RD+T+ SAL DRRF PI   EL  L  SVSLL+ YE A+H+EDWEIG+HGI+I+F D  G+ YSAT+LP+VA+EQGWS    ++ L++KAG+++ V  A L  ++VTRY+SSKHKL YQEYL ++
Sbjct:    2 ASAAMVVYCFDTLHAHFDGSDEPVPSFDVDEQFPLFVTWEIERQHGTD-LRGCIGTLAPTRLENLRDFTFKSALKDRRFDPIHPQELHRLHCSVSLLIDYEDAEHYEDWEIGIHGIIIEFEDSNGNYYSATYLPDVASEQGWSHLEAVTSLMKKAGFRRSVSPAMLQKLKVTRYRSSKHKLTYQEYLAIK 190
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1015.186.1 vs.
Match: AMMECR1 (domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SQP7_9STRA)

HSP 1 Score: 207 bits (527), Expect = 4.000e-58
Identity = 98/189 (51.85%), Postives = 129/189 (68.25%), Query Frame = 1 
Query:  208 ATREMCAYCFDVIIAHFNNIESPPPSFSTSYVCGMFVTWDKHEHGTESLRGCIGTLHPQAISQIRDYTYSSALNDRRFAPIEMSELASLDVSVSLLVKYEPAQHWEDWEIGVHGIVIKFNDDRGSSYSATFLPEVAAEQGWSRKVTLSRLVRKAGYKQVVDRAFLAGVEVTRYQSSKHKLPYQEYLEMR 774
            A+  M  YCFD + +HF+    P P F       +FVTW+  EHG   LRGCIGTL P  +  +RD+T+ SAL D RF PI   EL  L  SVSLL+ YE A+ ++DWEIG HGI+I+F+D RG+ YSAT+LP+VA EQGW+   T++ L+RKAGY++ V  A L  V+VTRY+SS HKL YQ+YL ++
Sbjct:    2 ASAAMVVYCFDTLQSHFDGGTEPTPRFDVHQEYPLFVTWEIEEHGGTHLRGCIGTLSPTRLRNLRDFTFKSALRDHRFDPIGPQELHRLHCSVSLLIDYEDAESYDDWEIGTHGIIIEFSDSRGNDYSATYLPQVAREQGWTHVETVTSLMRKAGYRRSVSEAMLRTVKVTRYRSSIHKLTYQQYLSVK 190
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1015.186.1 vs.
Match: AMMECR1 (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XM79_9STRA)

HSP 1 Score: 206 bits (525), Expect = 7.140e-58
Identity = 102/190 (53.68%), Postives = 133/190 (70.00%), Query Frame = 1 
Query:  208 ATREMCAYCFDVIIAHFNNIESPPPSFSTSYVCGMFVTWD-KHEHGTESLRGCIGTLHPQAISQIRDYTYSSALNDRRFAPIEMSELASLDVSVSLLVKYEPAQHWEDWEIGVHGIVIKFNDDRGSSYSATFLPEVAAEQGWSRKVTLSRLVRKAGYKQVVDRAFLAGVEVTRYQSSKHKLPYQEYLEMR 774
            A+  M  YCFD + AHF+    P P+F T     +FVTW+ + +HG + LRGCIGTL P  +  +RD+T+ SAL D RF PI   EL  L  SVSLLV YE A H+EDWEIGVHGI+I+F+D  G  YSAT+LP+VA+EQGWS    ++ L++KAGY++ V  A L  ++VTRY+SSKHKL YQEYL ++
Sbjct:    2 ASAAMVVYCFDTLHAHFDGGSEPVPAFDTRPKFPLFVTWEIERQHGVD-LRGCIGTLAPTKLQNLRDFTFKSALKDHRFEPIAPHELQRLHCSVSLLVDYEDADHYEDWEIGVHGIIIEFSDANGGFYSATYLPDVASEQGWSHLDAVTSLMKKAGYRRKVTPAVLNALKVTRYRSSKHKLSYQEYLAIK 190
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1015.186.1 vs.
Match: AMMECR1 (domain-containing protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6V7T6_9STRA)

HSP 1 Score: 204 bits (519), Expect = 5.230e-57
Identity = 97/189 (51.32%), Postives = 128/189 (67.72%), Query Frame = 1 
Query:  208 ATREMCAYCFDVIIAHFNNIESPPPSFSTSYVCGMFVTWDKHEHGTESLRGCIGTLHPQAISQIRDYTYSSALNDRRFAPIEMSELASLDVSVSLLVKYEPAQHWEDWEIGVHGIVIKFNDDRGSSYSATFLPEVAAEQGWSRKVTLSRLVRKAGYKQVVDRAFLAGVEVTRYQSSKHKLPYQEYLEMR 774
            A+  M  YCFD + +HFN+   P P F       +FVTW+  EHG   LRGCIGTL P  +  +RD+T+ SAL DRRF PI   EL  L  SVSLL+ Y+ A+ ++DWEIG HGI+I+F+D RG  YSAT+LP+VA EQ W+   T++ L+RKAGY++ V  A L  + VTRY+SS HKL YQ+YL ++
Sbjct:    2 ASAAMVVYCFDTLQSHFNDDVEPTPFFDVQQEYPLFVTWEIEEHGGIHLRGCIGTLAPTRLRNLRDFTFKSALRDRRFGPIGPQELQRLHCSVSLLIDYQDAKSYDDWEIGTHGIIIEFSDLRGKEYSATYLPQVAREQDWTHVETVTSLMRKAGYRRSVTEAMLKTISVTRYRSSIHKLTYQQYLSVK 190
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1015.186.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C617_PYTOL)

HSP 1 Score: 202 bits (515), Expect = 1.950e-56
Identity = 95/190 (50.00%), Postives = 131/190 (68.95%), Query Frame = 1 
Query:  208 ATREMCAYCFDVIIAHFNNIESPPPSFSTSYVCGMFVTWDKHEH-GTESLRGCIGTLHPQAISQIRDYTYSSALNDRRFAPIEMSELASLDVSVSLLVKYEPAQHWEDWEIGVHGIVIKFNDDRGSSYSATFLPEVAAEQGWSRKVTLSRLVRKAGYKQVVDRAFLAGVEVTRYQSSKHKLPYQEYLEMR 774
            A   M  YCFD + +HF+  + P P+F       +FVTW+  +  G   LRGCIGTL P  +  +R++T+ SAL DRRF PI   EL  L  SVSLL+ YE A+H+EDWEIGVHGI+I+F D+ G+ YSAT+LP+VA+EQGW+   T+  L+RKAG+++ V    L  +++TRY+SSKH+L YQEYL ++
Sbjct:    2 ANAAMVVYCFDTLHSHFDGSDEPVPTFDIHDKYPLFVTWETEQSPGDRHLRGCIGTLAPTKLQNLREFTFKSALKDRRFDPIHAQELHKLHCSVSLLIDYEDAEHYEDWEIGVHGIIIEFTDENGNFYSATYLPDVASEQGWTHVETVISLMRKAGFRRSVTDTMLKMLKITRYRSSKHRLSYQEYLALK 191
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1015.186.1 vs.
Match: AMMECR1 (domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZQS7_PHYSP)

HSP 1 Score: 201 bits (512), Expect = 4.930e-56
Identity = 96/189 (50.79%), Postives = 128/189 (67.72%), Query Frame = 1 
Query:  208 ATREMCAYCFDVIIAHFNNIESPPPSFSTSYVCGMFVTWDKHEHGTESLRGCIGTLHPQAISQIRDYTYSSALNDRRFAPIEMSELASLDVSVSLLVKYEPAQHWEDWEIGVHGIVIKFNDDRGSSYSATFLPEVAAEQGWSRKVTLSRLVRKAGYKQVVDRAFLAGVEVTRYQSSKHKLPYQEYLEMR 774
            A+  M  YCFD + +HF+    P P F       +FVTW+  E G   LRGCIGTL P  +  +RD+T+ SAL DRRF PI   EL  L  SVSLL+ Y+ A+ ++DWEIG HGI+I F+D RG+ YSAT+LP+VA EQGW+   T++ L+RKAGY++ V +  L  V+VTRY+SS HKL YQ+YL ++
Sbjct:    2 ASAAMVVYCFDTLQSHFDGGAEPTPRFDVLQEYPLFVTWEIEEQGGTHLRGCIGTLAPTRLRNLRDFTFKSALRDRRFDPIGPQELHRLHCSVSLLIDYQDAESFDDWEIGTHGIIIDFSDSRGNEYSATYLPQVAREQGWTHTETVTSLMRKAGYRRSVTQDMLKTVKVTRYRSSIHKLTYQQYLSLK 190
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1015.186.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXU3_9STRA)

HSP 1 Score: 201 bits (512), Expect = 6.580e-56
Identity = 102/199 (51.26%), Postives = 132/199 (66.33%), Query Frame = 1 
Query:  202 LQATREMCAYCFDVIIAHFNNIESPPPSFSTSYVCGMFVTWDKHEHGT------ESLRGCIGTLHPQAISQIRDYTYSSALNDRRFAPIEMSELASLDVSVSLLVKYEPAQHWEDWEIGVHGIVIKFNDDRGSSYSATFLPEVAAEQGWSRKVTLSRLVRKAGYKQVVDRAFLAGVEVTRYQSSKHKLPYQEYLEMRRL 780
            LQAT EM AYCFDV+IA    +E+  PSF TS  C +FVTW    +        ++LRGCIGTL  + IS ++DYTYSSA  D RF+PI + E+ SL  +VSLLV Y+ A H +DWEIGVHGI+I F+   G  YS T+LPEVA EQGW+    +  L+RKAGY++ + +  L  V VTRYQSSK  + Y++Y  MR +
Sbjct:    7 LQATEEMAAYCFDVLIACLKGMEAAAPSFDTSPQCPLFVTWHTQRYSRNGQVERKNLRGCIGTLSAKPISSLQDYTYSSAFRDSRFSPIALVEVPSLHCAVSLLVNYQQATHLQDWEIGVHGILIHFSVG-GVEYSGTYLPEVAKEQGWNHMEAIESLIRKAGYRRTITKQVLESVSVTRYQSSKTGVDYRQYCAMRNI 204
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1015.186.1 vs.
Match: AMMECR1 (domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2REZ7_9STRA)

HSP 1 Score: 201 bits (510), Expect = 9.350e-56
Identity = 95/189 (50.26%), Postives = 126/189 (66.67%), Query Frame = 1 
Query:  208 ATREMCAYCFDVIIAHFNNIESPPPSFSTSYVCGMFVTWDKHEHGTESLRGCIGTLHPQAISQIRDYTYSSALNDRRFAPIEMSELASLDVSVSLLVKYEPAQHWEDWEIGVHGIVIKFNDDRGSSYSATFLPEVAAEQGWSRKVTLSRLVRKAGYKQVVDRAFLAGVEVTRYQSSKHKLPYQEYLEMR 774
            A+  M  YCFD + +HF+    P P F       +FVTW+  + G   LRGCIGTL P  +  +RD+T+ SAL D RF PI   E+  L  SVSLL+ YE A  ++DWEIG HGI+I+F D RGSSY+AT+LP+VA EQGW    T++ L+RKAGY++ V    L+ V+VTRY+SS HKL YQ+YL ++
Sbjct:    2 ASAAMVVYCFDTLQSHFDGGTEPTPRFDIHQEFPLFVTWEIEKQGATHLRGCIGTLAPTRLRNLRDFTFKSALRDHRFDPIGPQEIQHLHCSVSLLIDYEDADGYDDWEIGTHGIIIEFKDSRGSSYNATYLPQVAREQGWDHIETVTSLMRKAGYRRSVSEDMLSSVKVTRYRSSIHKLTYQQYLSVK 190
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1015.186.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
AMMECR17.670e-15394.69domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Hypothetical6.160e-6557.07protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
AMMECR18.130e-6053.16domain-containing protein n=1 Tax=Globisporangium ... [more]
AMMECR14.000e-5851.85domain-containing protein n=2 Tax=Phytophthora Tax... [more]
AMMECR17.140e-5853.68domain-containing protein n=1 Tax=Pythium brassicu... [more]
AMMECR15.230e-5751.32domain-containing protein n=3 Tax=Peronosporaceae ... [more]
Uncharacterized1.950e-5650.00protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
AMMECR14.930e-5650.79domain-containing protein n=4 Tax=Phytophthora Tax... [more]
Hypothetical6.580e-5651.26protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
AMMECR19.350e-5650.26domain-containing protein n=2 Tax=Phytophthora ker... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1015contigEcto-sp9_F_contig1015:14752..20777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score461.5
Seed ortholog evalue2.5e-127
Seed eggNOG ortholog2880.D7FUU4
Preferred nameAMMECR1L
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896
EggNOG free text desc.AMMECR1
EggNOG OGsCOG2078@1,KOG3274@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAMMECR1 domain
Ec32 orthologEc-06_001130.1
Exons8
Model size2738
Cds size732
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1015.186.1prot_Ecto-sp9_F_contig1015.186.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1015 16695..19888 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928210.1533432-UTR-Ecto-sp9_F_contig1015:14751..166941622928210.1533432-UTR-Ecto-sp9_F_contig1015:14751..16694Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1015 14752..16694 -
1692277795.9650474-UTR-Ecto-sp9_F_contig1015:14751..166941692277795.9650474-UTR-Ecto-sp9_F_contig1015:14751..16694Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1015 14752..16694 -
1622928210.336904-UTR-Ecto-sp9_F_contig1015:19888..199191622928210.336904-UTR-Ecto-sp9_F_contig1015:19888..19919Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1015 19889..19919 -
1692277796.0548363-UTR-Ecto-sp9_F_contig1015:19888..199191692277796.0548363-UTR-Ecto-sp9_F_contig1015:19888..19919Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1015 19889..19919 -
1622928210.3526947-UTR-Ecto-sp9_F_contig1015:20745..207771622928210.3526947-UTR-Ecto-sp9_F_contig1015:20745..20777Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1015 20746..20777 -
1692277796.0653484-UTR-Ecto-sp9_F_contig1015:20745..207771692277796.0653484-UTR-Ecto-sp9_F_contig1015:20745..20777Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1015 20746..20777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928210.1691678-CDS-Ecto-sp9_F_contig1015:16694..167751622928210.1691678-CDS-Ecto-sp9_F_contig1015:16694..16775Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1015 16695..16775 -
1692277795.97782-CDS-Ecto-sp9_F_contig1015:16694..167751692277795.97782-CDS-Ecto-sp9_F_contig1015:16694..16775Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1015 16695..16775 -
1622928210.1831262-CDS-Ecto-sp9_F_contig1015:17252..173411622928210.1831262-CDS-Ecto-sp9_F_contig1015:17252..17341Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1015 17253..17341 -
1692277795.9856374-CDS-Ecto-sp9_F_contig1015:17252..173411692277795.9856374-CDS-Ecto-sp9_F_contig1015:17252..17341Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1015 17253..17341 -
1622928210.1966295-CDS-Ecto-sp9_F_contig1015:17855..179461622928210.1966295-CDS-Ecto-sp9_F_contig1015:17855..17946Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1015 17856..17946 -
1692277795.9957669-CDS-Ecto-sp9_F_contig1015:17855..179461692277795.9957669-CDS-Ecto-sp9_F_contig1015:17855..17946Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1015 17856..17946 -
1622928210.2096446-CDS-Ecto-sp9_F_contig1015:18293..184081622928210.2096446-CDS-Ecto-sp9_F_contig1015:18293..18408Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1015 18294..18408 -
1692277796.0092628-CDS-Ecto-sp9_F_contig1015:18293..184081692277796.0092628-CDS-Ecto-sp9_F_contig1015:18293..18408Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1015 18294..18408 -
1622928210.2311776-CDS-Ecto-sp9_F_contig1015:18578..186921622928210.2311776-CDS-Ecto-sp9_F_contig1015:18578..18692Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1015 18579..18692 -
1692277796.0229099-CDS-Ecto-sp9_F_contig1015:18578..186921692277796.0229099-CDS-Ecto-sp9_F_contig1015:18578..18692Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1015 18579..18692 -
1622928210.2994566-CDS-Ecto-sp9_F_contig1015:19056..191231622928210.2994566-CDS-Ecto-sp9_F_contig1015:19056..19123Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1015 19057..19123 -
1692277796.0333414-CDS-Ecto-sp9_F_contig1015:19056..191231692277796.0333414-CDS-Ecto-sp9_F_contig1015:19056..19123Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1015 19057..19123 -
1622928210.3180838-CDS-Ecto-sp9_F_contig1015:19713..198881622928210.3180838-CDS-Ecto-sp9_F_contig1015:19713..19888Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1015 19714..19888 -
1692277796.0427513-CDS-Ecto-sp9_F_contig1015:19713..198881692277796.0427513-CDS-Ecto-sp9_F_contig1015:19713..19888Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1015 19714..19888 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1015.186.1

>prot_Ecto-sp9_F_contig1015.186.1 ID=prot_Ecto-sp9_F_contig1015.186.1|Name=mRNA_Ecto-sp9_F_contig1015.186.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=244bp
MATALVGSPTSAGSSRAEQERQFSRDGGSSSSGLQQQADAEPPAETLQAT
REMCAYCFDVIIAHFNNIESPPPSFSTSYVCGMFVTWDKHEHGTESLRGC
IGTLHPQAISQIRDYTYSSALNDRRFAPIEMSELASLDVSVSLLVKYEPA
QHWEDWEIGVHGIVIKFNDDRGSSYSATFLPEVAAEQGWSRKVTLSRLVR
KAGYKQVVDRAFLAGVEVTRYQSSKHKLPYQEYLEMRRLAQPY*
back to top

mRNA from alignment at Ecto-sp9_F_contig1015:14752..20777-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1015.186.1 ID=mRNA_Ecto-sp9_F_contig1015.186.1|Name=mRNA_Ecto-sp9_F_contig1015.186.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=6026bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1015:14752..20777- (Ectocarpus species9 EcSCA_722f female)
CCTTCTCTCAGGCAACCGAAAGCTTACAACAGGTGAGAGCCGTGGCGAGC
TAGTGGCTAGATATGCGACGAACACATGTCTGAACTGCCTATCCCTCTCC
GTCCTGTCAGCGTCTGTGCGTGTGTGACGAGAATTTGGGCATGGCGGCTT
GCGCTTCTCAACTTATACTCCGACTGGGAAGAACCTGGTATTCATAGAGC
TCGATACACACTGACTGCTGTAGTATCTCGGGCTGGGCCCTGTTACTCTG
TCCGCTTTTCGAACGACGTGGTACGATCTTGTCAAGGGTGTAGGGTTTCT
ATCCCGTTTGAGCGAGATCTTAGCTTCATGGCCGACTCGCGAACCCCGAT
ACACACAAGAGAAGTCAAACAAATCGAGTCAACGACGACCGACATTTTCA
TATTCCCGTTCTCCGGATCAGCTCTCGAAACATCCCGACCTCCGCTTGGT
TCGGTATTAGGTATAACACGTGTGAGGTTTCGTCCTACCAGAGCAAGGGC
GCCAATAATTCTCCCTTCTGGACATTGTTAGCGAATGGTAAACTCCCTTT
CGTGGAAAAGGTGCTGAGCTTTCCTTGAGATGATTCCGGAGAACTCGTCG
AATTGGTGCCCATTTTTTGAAGTTGCGGTTGACCTTTTTTTTATCTTCTG
AAAAAGAAGATCCGATCGCGCCCCCACGCCCCCGGTAAATTGCTGTGCGT
GCCTATGTACTGCTGTACACCGAGACAGACAAGAGGTTTTGGAATGTTAT
ATCTTCTTCCCTCCCGTCTTCGATATTGTTGGTCGCTATCGTGGCGGGAC
CGCACGCTACGAACTACGGACCCATCTCCGAACCACCCTATACACCACGC
GCCTGTAGGTTGGGTTCGGGGCCATCACGCACGAGCAGGATGGCGACAGC
ACTCGTTGGGAGCCCGACCAGCGCCGGCAGCAGCCGCGCGGAGCAAGAGC
GGCAGTTCTCTCGCGACGGCGGCAGCAGCAGCAGCGGGCTGCAGCAGCAA
GCCGACGCCGAGCCTCCTGCCGAGACGCTGCAGGCGACGCGTGAAATGTG
CGCCTACTGCTTCGGTAGGTGGTGGGTGTTTGTGTGCTCATGTTCATGTA
GCCATCCGTGGCTCCTACATGTACACACCAGAGATTGAGTATAGAGCACA
CCGCTTGCTCACGTACAGGAAGCTGGAGGCCCGAGTGGTTTTTGGAATAT
GTCGTTGTTCATGTCGCACCGTGGCTCCCGACCTGGGTAATTGCGGTGCT
ACTACAGAAAAAGTCGTCTTTATTTCTACGGAAGACGTAAAAACCAAACT
AGACTAAACACAAGTATCCCCATGAAGGCATTTTTGCTAGTTCAAGTTCA
AGTTCCGACCCGGCCACTCGTCCCTCCTCTCCCGGCTTCTGTCTCGTCAG
AAAATATACATACAATCACCGAAGGCCCTTCGCATATGGTTCTATCGCGT
CGAATGGGGATGCCACGTACTGTAACGGTACCCATCGTGGAAGTAGAAGC
CCCTTCTTGGCACACTTCGGAGAAGGTCCCACATATTCGTGTCCGAGTTG
GCCCGTTTGACCACCGCCCAAGCACGGACCGGCTCCCCTTCCGTGTGGTA
CTCACACGTTGCTGTTTTCGATAATTTGTCTCCCTCCCGCTCGATTGTCG
TCAGATGTGATCATCGCCCACTTCAACAACATCGAGTCACCTCCTCCATC
GTTCTCCACGAGTTACGTCTGGTGGGACACGTGTGCAGCCTATTTTGTCT
TGTTTTTTTTGTGCACTCTTTGACGGGTGTAAAAGCAGAGTGGGCACTTT
GTGTGTTTGTTTTTTCGTGCGCTGTTTGACGGCTGCAAAAGCAGGGTAGA
GATTCCGAGCGAGACACTGCTGTTTCTGATCTGCAAGATCTTTGTTTGGT
AATAAGGATCGCGCGGCGATTTTTTCTCGCCGACACCGGCTTTCTGACTG
AATCCGTCTCCGTCTGTCACGTCCATCTAGCTGAGCGAGACCTCCGAGGC
TCTCAATACTTCCACCGGAGAGCCGCGCCGTTTTCACGTGTGTTACCCCG
CCACGGCCCCGCTTTGTCCGCACTCGCTTCCGCAGCGGCATGTTCGTCAC
TTGGGACAAGCACGAGCACGGCACGGAGTCCCTGCGGGGCTGCATAGGAA
CCCTTCATCCTCAAGCCATCTCGCAGATCAGAGACTACACCTACAGCAGG
TTAGCAGGAGCGGAGCCGCTTGCGTAGCTGCTGCTGCAATTTCGTTGTAT
TTGTCACATGGGCAAGTCCTCCTGATGATTTGTGGACTCTTCTTACAGCT
TGGGCCTACCGACCGTGCGCTACGCTTGCTTCCCTTGCCACGTGTGCTGG
CCTGTGCCACCTTGAGCAGCGCGTTAAATGACAGGAGATTCGCACCGATC
GAGATGTCAGAGCTCGCCTCCCTCGACGTCTCCGTCTCGCTTCTTGTCAA
GTACGAGCCAGCCCAACATTGGGAAGACTGGGAGGTGTGTGACGATGCGA
TGCGCCAAAGTGTGTTGTGCGATGGTGCTCTACAGCATAAAAAACCCCGG
TCTGTTGAATACAAAAATGTTGCTGACGGTCTTTACCTTTGCGTGCTTAT
CGAGTTGATCAAAGTGGTGTGGAAAAGCGACCACCTCTTACTGCTCTGGC
AGGCGAACGGCTTCGGGTGGACGCCCAGCGCTCGTTTTCTGTCTGAACAG
GCGCTGCTTTCGGATGCCAATGAACACTACTTACCTCCTGCTTCCGTGCC
CATCTCCTTTCCGCCGAGCATCTTACCCCTCACCACCGTTGCCTGTCTTG
TTGTGTTGTCGGATTGTTTGCAACGAAGCAGATCGGCGTGCACGGCATTG
TGATCAAGTTTAACGACGATCGGGGGTCGAGTTACAGCGCCACTTTCCTC
CCGGAGGTGGCGGCAGAACAAGGTGCGCGAAACGAAAAATGAAGTGATCC
AAGCCCCCTTCCCCCCCTGGGGCATAGGTATTTGTAGTCGGTTGAAAAGG
GCGGGGAGTGATATCGATAGGATGGATAGGTTAGGGAAAAATTTAGCCAC
CTTTGGCAAACGATTGGCCATCGATGATCGGTCCTGCGGGAACAAACTCC
GTCCTCTATATATGAGGACGCGTGGTCAATTGGCTAACCGGTAAGGCACC
TGAAACATGAGATAACTCCCCCCCCCCCCCTTAAGTAACGGCAGAACTGC
TGTACAACCGCGCGTCTGAACGGAACAAGCGTGCTTTGACCCTGCGTTTG
CGCGGGTTGCATCTTGAGGGCTTGATACTTAAGTTGGGTCGATGTGTGTC
AGAGGTGTGTAGACTGGCGCCAGAATATGCAGGACGAACACACAACACAC
ACATGCCTTGCGCTTCCCGGCTGACATTGACTCTTTCGCTACGTGGACAT
AGTTTTGCGACACTCCTCGTTCGGCTGCCATGCCAGGTTGGAGCAGGAAG
GTGACCCTCTCACGGCTAGTGCGTAAGGCCGGGTACAAGCAGGTGGTGGA
TAGGGCTTTCCTTGCGGGCGTAGAGGTAAGACTGGCGAGCGTCGGACCAG
CTATTGTAGGCGTTTTGCGTCCAACAGCCCGACGACTTGTGGGGTGAATG
CCGCCGCCCACGTCCTCGCTGTCAGGCGTGTTTAACTTTGATTCATCTCG
CAGCGAGGCGAGGTGACTCGTAGTCGAGAGGCGCTATGCACATAAACGAT
CAACATCTCGCGGTGCTGCTTGTAGACACAGACAGCCAGACTTTTCCCTC
GCGAGAAGTTGCAGCATTGGTAAACGTTGGCTGCGCCTCTTGTGCGATGT
AACGCGCGCGCCATGCTTTACGTGTGAACGTGGTCTGAGTGTCGAATCTT
ATCGCGAGCGGCCAAGCACTACTTCAGTGCTTGTACCCCGAGTCCCGCGT
GGATCTACAACCCTGCTACGGCAGCGTGCGTTGTGCAAAAGACTAACTTG
TGTAAGCGATCCACCATCTTCCTGCCATACTCGTACCCACGTTACCCGTC
AGGTCACCCGCTACCAGAGCTCGAAGCACAAGCTGCCGTACCAAGAGTAC
TTGGAAATGAGAAGGCTCGCCCAGCCTTATTGACGCGTCAGATCGGCGAC
AGTATCCCGTCCGCCATTCTGCCTGAGAGACTCTTCCGCGCCATGCGCTT
GGCTAGCTTCATTCCCCATTAGCATCGTTAACTACCGTGTTTGCGTCTTG
TTTCGCGCGTCCACAAAATTTCTGCCGTTGATGCAACGCGCCGGGCGTGC
GCCCCAAGAAATTGGACTCGTATGTACAGCATTTTTGGAGATCGAAACGG
CTTTTTTCCGCGGAACAGCTGCACATCGTGGTCGTCGTGTTTGACGTACG
TGAACCAAGGCCTCCTATTATTTGGTTGTACGTCTGGACGTATAAGGACT
TTAACGTGTGTCGGAAACCGCTGTAAAAAGCCGTCTCGTGTCTTCCGATG
TGTTAGCAGTGACATCCGGAACCCCACACACAAAGCGACTCGGGGGTTCG
GAGCAAGTTTTCAGTGCATCCTTTACGTTTTTTTGTTTTGAGAGATTCTG
GTGCGGTGCGGTTCTTCTCCCTTTTTGTTGGGGTGCTAGACAGGCGTAGA
TTTTGCTGCGCGTATTGTGACGTATCTGCTGGTGCCTTAGTGCCAACTTG
TTCGGGAAAGACAGAAGAGCGCAAGGTGCTTGGCAACGGTCGTACTAGGA
TGGCGTTTCCTCGCGGCGTCGGTAACGAGCATTATTTATTGTTCCGATTT
TTGGCGATTGTTGAAGGTCGGTTCCCGTTGTGTTTTGGATTATTTTTGGA
ATGGGGAGAGGAAGCCGGCAGGATATTTGAGGCTCGGAAGAGGTATTTGA
TGCGCACGGGGTTCGCCACCCTAGGTATTTTGTTGGTCTGTTGTTGGTGT
TATTTCCAGTCATGCTCACACACGTGTGTTTGGACGTGTACATATGCATC
TTACAGTGCTCGTAAACTTTGAAGTACAAATACATGAATTTTCGGAAACG
TACGTAGTTGGTTTCGAGATCGCAAGCAAGGGATGGAAGTTTCCCATGTC
TCGTGTCCATGAGTTTTAGGTTGTGATTTCGGCATCTTATCGCTTGAATG
TCGTCTGGGCGAAAAGCTAGGTTGCACCCCGACCATTCGGTTCGGGGCCA
GTGGATCTTGCTGTTGTTGTCTTTCCGTTGAAAGCCGTTCTGGTATCTGT
GCTCTCAAGGTTTAGAAATCGATCGGTTTAGTAGCCCCATCGCGTTGTGT
TTTGTAGGGAACCTACAAGCACCAGGCTGTCTGTGGTAGTTGGCTCGTAG
GAAGACTAAGACCTGTTCACGTCATACAGTAATCACCCATTGATGAATCC
ACTTGATTGGTTTGTTGAGCGGATGTCCTGCCTTCCTTGTTCGAGAGGGA
GTTCCCATCGTACACCTTTAGCTTCTGAGACGACGTGTGGTTCGCCGAAC
ATCTGCTGTAGATACTCCGTCTCTTCTTAAACACTCCACTTTAACAACAA
CTGGATAGGCATCGATTGGCTGCTGTTCACATGACCGTTAGGACTTGAAC
TGACTGACGAACTTGGAAGGGGGCACTTCGTGCACCACGGTAAGCACACA
GAATACATTTTCCACTTCTTCTCGCGTGAGCCTTACCAAGACCCAGGCAA
TGGCAAATGGGGGGAACTGGATGGAGGAAGTCAGAACCACTCCTGGCAGG
GCGCATGCACACTATGCACACAACAACACAACCAACACACCGTTACCACG
AAATTCGTCCGGACGGAGGATGGGCAACAGCGCGACGATCGGTGTGTCAA
AGCTATCGACCACGATGGTGCTTCCCTTTCCCACCTTGCGCCTTGTTCTT
GGGAAAACATAGGGTGAAAATGAACAGATCCAGTCACTACCGACGCGCTC
TGAGACTCTCAAACGCAGTGCTAGCCCGTTTTAAGACAAGAAGACATCGG
GAATGACCACAAAGAATTGCACCCGACGACCATGATTCCGTATCTTGCAC
CCCGAAAAGGCAACTACCAAAACTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1015:14752..20777-

>mRNA_Ecto-sp9_F_contig1015.186.1 ID=mRNA_Ecto-sp9_F_contig1015.186.1|Name=mRNA_Ecto-sp9_F_contig1015.186.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1464bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1015:14752..20777- (Ectocarpus species9 EcSCA_722f female)
ATGGCGACAGCACTCGTTGGGAGCCCGACCAGCGCCGGCAGCAGCCGCGC
GGAGCAAGAGCGGCAGTTCTCTCGCGACGGCGGCAGCAGCAGCAGCGGGC
TGCAGCAGCAAGCCGACGCCGAGCCTCCTGCCGAGACGCTGCAGGCGACG
CGTGAAATGTGCGCCTACTGCTTCGATGGCGACAGCACTCGTTGGGAGCC
CGACCAGCGCCGGCAGCAGCCGCGCGGAGCAAGAGCGGCAGTTCTCTCGC
GACGGCGGCAGCAGCAGCAGCGGGCTGCAGCAGCAAGCCGACGCCGAGCC
TCCTGCCGAGACGCTGCAGGCGACGCGTGAAATGTGCGCCTACTGCTTCG
ATGTGATCATCGCCCACTTCAACAACATCGAGTCACCTCCTCCATCGTTC
TCCACGAGTTACGTCTGATGTGATCATCGCCCACTTCAACAACATCGAGT
CACCTCCTCCATCGTTCTCCACGAGTTACGTCTGCGGCATGTTCGTCACT
TGGGACAAGCACGAGCACGGCACGGAGTCCCTGCGGGGCTGCATAGGAAC
CCTTCATCCTCAAGCCATCTCGCAGATCAGAGACTACACCTACAGCAGCG
GCATGTTCGTCACTTGGGACAAGCACGAGCACGGCACGGAGTCCCTGCGG
GGCTGCATAGGAACCCTTCATCCTCAAGCCATCTCGCAGATCAGAGACTA
CACCTACAGCAGCGCGTTAAATGACAGGAGATTCGCACCGATCGAGATGT
CAGAGCTCGCCTCCCTCGACGTCTCCGTCTCGCTTCTTGTCAAGTACGAG
CCAGCCCAACATTGGGAAGACTGGGAGCGCGTTAAATGACAGGAGATTCG
CACCGATCGAGATGTCAGAGCTCGCCTCCCTCGACGTCTCCGTCTCGCTT
CTTGTCAAGTACGAGCCAGCCCAACATTGGGAAGACTGGGAGATCGGCGT
GCACGGCATTGTGATCAAGTTTAACGACGATCGGGGGTCGAGTTACAGCG
CCACTTTCCTCCCGGAGGTGGCGGCAGAACAAGATCGGCGTGCACGGCAT
TGTGATCAAGTTTAACGACGATCGGGGGTCGAGTTACAGCGCCACTTTCC
TCCCGGAGGTGGCGGCAGAACAAGGTTGGAGCAGGAAGGTGACCCTCTCA
CGGCTAGTGCGTAAGGCCGGGTACAAGCAGGTGGTGGATAGGGCTTTCCT
TGCGGGCGTAGAGGTTGGAGCAGGAAGGTGACCCTCTCACGGCTAGTGCG
TAAGGCCGGGTACAAGCAGGTGGTGGATAGGGCTTTCCTTGCGGGCGTAG
AGGTCACCCGCTACCAGAGCTCGAAGCACAAGCTGCCGTACCAAGAGTAC
TTGGAAATGAGAAGGCTCGCCCAGCCTTATTGAGTCACCCGCTACCAGAG
CTCGAAGCACAAGCTGCCGTACCAAGAGTACTTGGAAATGAGAAGGCTCG
CCCAGCCTTATTGA
back to top