mRNA_Ecto-sp9_F_contig10142.181.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10142.181.1
Unique NamemRNA_Ecto-sp9_F_contig10142.181.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10142.181.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10142contigEcto-sp9_F_contig10142:885..2617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size274
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10142.181.1prot_Ecto-sp9_F_contig10142.181.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10142 885..2617 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928209.2083013-CDS-Ecto-sp9_F_contig10142:884..9471622928209.2083013-CDS-Ecto-sp9_F_contig10142:884..947Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10142 885..947 -
1692277795.6627288-CDS-Ecto-sp9_F_contig10142:884..9471692277795.6627288-CDS-Ecto-sp9_F_contig10142:884..947Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10142 885..947 -
1622928209.2221107-CDS-Ecto-sp9_F_contig10142:1529..16551622928209.2221107-CDS-Ecto-sp9_F_contig10142:1529..1655Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10142 1530..1655 -
1692277795.6816075-CDS-Ecto-sp9_F_contig10142:1529..16551692277795.6816075-CDS-Ecto-sp9_F_contig10142:1529..1655Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10142 1530..1655 -
1622928209.2340546-CDS-Ecto-sp9_F_contig10142:2533..26171622928209.2340546-CDS-Ecto-sp9_F_contig10142:2533..2617Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10142 2534..2617 -
1692277795.6904097-CDS-Ecto-sp9_F_contig10142:2533..26171692277795.6904097-CDS-Ecto-sp9_F_contig10142:2533..2617Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10142 2534..2617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10142.181.1

>prot_Ecto-sp9_F_contig10142.181.1 ID=prot_Ecto-sp9_F_contig10142.181.1|Name=mRNA_Ecto-sp9_F_contig10142.181.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=91bp
MLLKRNVLGGCTPVGCASVPGGLQEAMTGGDEEALHKAVSSVLVAQLREQ
QEPGLTLREFFDKRQRAYDAGRKLNRRSIARILKQETEDRD
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mRNA from alignment at Ecto-sp9_F_contig10142:885..2617-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10142.181.1 ID=mRNA_Ecto-sp9_F_contig10142.181.1|Name=mRNA_Ecto-sp9_F_contig10142.181.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1733bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10142:885..2617- (Ectocarpus species9 EcSCA_722f female)
ATGCTGCTGAAGAGGAATGTCCTCGGTGGGTGCACCCCCGTCGGGTGCGC
ATCGGTGCCTGGGGGCCTGCAGGAGGCCATGACGGTGAGAGCGCCCTCAT
TATTTTGGTTTGCATCGGTTGTTGTGTGGCACGTGTTTTTGTGTGTGGAT
ACCCTACAGCAGCGGTGCCGTCTGGATCTACCGTGCGCTCCAAGCCTCCT
CGCTAGTGGGATGCCGCGCCGCCGAACTTAGAACTAGCACGAGCAACCAC
CTTAGAACTTTTATTATTTTCATGGATCCGTCCGTGTTCCAGTCACCGCC
CCTTTTCTTCTCTCTCTTTCACCCCGCCAAAAAGCAAGCGATCCTGAGAG
AAAGAAAAAGGTGAACCACCACATTGTCTGCATGGTCGCTGTAGCCTTCT
CACACGCATCCTCAGCTGTCCAAAAGATACTTTGATGTACCAGAAAGTGC
CGTCTGCGCACACACACGATTCTTGCGCTAAAACGGAACCTCCGTGGAAC
AAGTACAATATTCCCCTACAGTACCCCTCCCAGTCAACCCACTCTTTGAG
CCCCCTCTATTTTTGTCGCTCATCGGTCCCCTAAGGATCAACCGTATCTA
CTGCTGTAGCTGCCTGTTGGACAAACTTTTCTTCTGGTTGTAAAAATGGG
GACAGCCAGATCAAGGGTGAAAAATGGTACATGCAACGGATGTTGTGTTT
ACCTCTAAAACAGGATACGACGGGCAAGTTCAATGTAAACCAAGAGGGCA
TCGCGTTGATCTGGCGGCCATGATTGCGGGCGAACTCAATTAATCGCAGT
GAAGTTACCACAATGGATACAAACGTGAACAATATGCTGGTACACGCTGC
GCGACGCAGAACCAAGCAAGCACGAGATGCCAATAGAAATGTAAGATATG
CCAACGGTTCATCTGATACTTTCTGGTCCTCGCTGCTCGTTGCGCCGAAA
CGACGTCCATAGGGCGGCGACGAAGAAGCGCTGCACAAGGCAGTGAGCTC
GGTGCTGGTGGCTCAGCTCCGGGAGCAGCAGGAGCCCGGGCTTACGCTCC
GGGAATTTTTCGACAAACGGCAGAGGGCATACGACGCGGTAAGAAGCGAG
GCGTTTTCTTCGGTCGATGAGGAACGCTTGTTTGTGTAATCTCATTACGG
GCTGTTTGTAGTTTTTCTCGAGTTGTGCACAGCAAGAGAGATGGCATGTG
CATACGTCGCCATCTCGCTGGAGACACCCGATCGATGTGGCAAGTCCTCT
TGCGGAGCAGTCACACATAAACTGCCGCTGCGCCACAGCGTTTCACAATT
TTCTTGTTCTTGTTTCTTGTCCCGCCCCCCCCGAGTTCGTGAGGGAGAGA
TAGAAAGGGGGAGACAGAGAAGTAGAGTGCGATCTCCGTACCATAGAATG
TGTGGGTGGGTTCAGGATGATGTTCGCTGCGGAAAGAATGCTGAGGTCGG
ACCATCGACCTTCCTATCACAGCAAGAAGGCCTGCAGCCGAGACTTCCAA
CCGGGCGCTTTTCCGATACTCTCTGGCGCACGCACCACAAACAAGAATAC
AACGGCTACACAAACACACAAACCAAGGCCGTCCGCGAGAGAGAATATGC
TGACAAGACAAGCCCCCCGCTGCCCTTCCCTCATTTTCCCTCTTTCCACG
AAATACACCACACCCGCCAGGGGCGCAAGCTCAACAGGAGGAGCATCGCC
CGCATCCTCAAGCAAGAGACGGAAGACCGCGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10142:885..2617-

>mRNA_Ecto-sp9_F_contig10142.181.1 ID=mRNA_Ecto-sp9_F_contig10142.181.1|Name=mRNA_Ecto-sp9_F_contig10142.181.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10142:885..2617- (Ectocarpus species9 EcSCA_722f female)
ATGCTGCTGAAGAGGAATGTCCTCGGTGGGTGCACCCCCGTCGGGTGCGC
ATCGGTGCCTGGGGGCCTGCAGGAGGCCATGACGATGCTGCTGAAGAGGA
ATGTCCTCGGTGGGTGCACCCCCGTCGGGTGCGCATCGGTGCCTGGGGGC
CTGCAGGAGGCCATGACGGGCGGCGACGAAGAAGCGCTGCACAAGGCAGT
GAGCTCGGTGCTGGTGGCTCAGCTCCGGGAGCAGCAGGAGCCCGGGCTTA
CGCTCCGGGAATTTTTCGACAAACGGCAGAGGGCATACGACGCGGGCGGC
GACGAAGAAGCGCTGCACAAGGCAGTGAGCTCGGTGCTGGTGGCTCAGCT
CCGGGAGCAGCAGGAGCCCGGGCTTACGCTCCGGGAATTTTTCGACAAAC
GGCAGAGGGCATACGACGCGGGGCGCAAGCTCAACAGGAGGAGCATCGCC
CGCATCCTCAAGCAAGAGACGGAAGACCGCGACGGGCGCAAGCTCAACAG
GAGGAGCATCGCCCGCATCCTCAAGCAAGAGACGGAAGACCGCGAC
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