mRNA_Ecto-sp9_F_contig10113.155.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10113.155.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLJ6_ECTSI) HSP 1 Score: 300 bits (769), Expect = 2.600e-103 Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 2
Query: 2 VFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPWDMEWRNRNGIEQPVHNRRRTPPKKKW 439
VFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRP+TKMDRIASTHERSNPWDMEWRNRNGIEQPVHNRRRTPPKKKW
Sbjct: 2 VFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPATKMDRIASTHERSNPWDMEWRNRNGIEQPVHNRRRTPPKKKW 147
BLAST of mRNA_Ecto-sp9_F_contig10113.155.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0N7_9STRA) HSP 1 Score: 102 bits (255), Expect = 9.890e-25 Identity = 48/122 (39.34%), Postives = 77/122 (63.11%), Query Frame = 2
Query: 5 FYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPWDME 370
FYQ + T + RT P LT ++RR +LE+GG+VR V NHGV+ L YRF ++ + ++R+ + GRW S Y+DA P K++ L +D +R +T +P KM+ I++ H+ +NPW+ +
Sbjct: 3 FYQNVFTCKWRTPPEQLTRLYRRLCNTVLEDGGMVRCVENHGVKDLAYRFRARTAMSGSENRYHTRGRWVSMYFDARPETLDKIDADLKMQDFYLRSNTIKPVVKMNWISTRHK-TNPWERD 123
BLAST of mRNA_Ecto-sp9_F_contig10113.155.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IGM9_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 4.730e-20 Identity = 43/120 (35.83%), Postives = 76/120 (63.33%), Query Frame = 2
Query: 2 VFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPW 361
VFY+ ++T + T LT + + ++ ++E GG+VR+V NHG+R LP+RF +K+ KE +R++ GR+ S +YDASP V K+E ++ +D+++R + + K+ I E+ NP+
Sbjct: 2 VFYECVLTAKNTAPFTSLTKLMKTISSTVVENGGIVRTVQNHGIRNLPHRFKAKYPDKE-GNRYYKKGRFISVWYDASPRVLAKVENEIRLDDQILRHTHLKARNKLWYINIASEKKNPY 120
BLAST of mRNA_Ecto-sp9_F_contig10113.155.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8YXD6_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 7.430e-20 Identity = 40/120 (33.33%), Postives = 78/120 (65.00%), Query Frame = 2
Query: 2 VFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPW 361
VFY+ ++T + + LTN + +++++E GG+VR+V NHG+R LP+RF +++ KE +R++ GR+ S +YDASP ++E ++ +D+++R + + K+ I + +E+ NP+
Sbjct: 2 VFYECVLTAKNTASFASLTNTVKSISSIVVESGGIVRTVQNHGIRNLPHRFKARYPDKE-GNRYYKEGRFISVWYDASPRTLNQVENEIRLDDQILRYTHLKARNKLWYINNPNEKKNPY 120
BLAST of mRNA_Ecto-sp9_F_contig10113.155.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FMF6_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 7.260e-19 Identity = 42/120 (35.00%), Postives = 75/120 (62.50%), Query Frame = 2
Query: 2 VFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPW 361
VFY+ +++ + T+ LT + ++ + ++E GG+VRS+ NHG+R P+RF +K+ R++ GR+ S YYD++P K++E L D+V+RV+ + +K+D I HE+ NP+
Sbjct: 2 VFYECVLSTKHTTHFKALTALMKQVSLKVVENGGIVRSIQNHGLRTFPHRFKAKYPDYLTQQRYYEQGRFISIYYDSNPTTLKQVETVLTMNDQVLRVTHLKSRSKLDWINYKHEK-NPY 120
BLAST of mRNA_Ecto-sp9_F_contig10113.155.1 vs.
Match: Hypothetical (protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YM88_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 8.540e-19 Identity = 42/120 (35.00%), Postives = 75/120 (62.50%), Query Frame = 2
Query: 2 VFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPW 361
VFY+ ++T + LT++ + + ++E GG+VRSV NHG+R L +RF ++H ++ R F GR+ S YYD+SPA+ +++ E L ++ V+R + R K+D I + +++ NP+
Sbjct: 2 VFYECVITAKNTAPFYQLTSLMKEISLKVVENGGIVRSVQNHGIRDLAHRFRARHPDRD-GTRLFQKGRFISVYYDSSPAIQEEVGEILVMDENVLRATHLRARNKLDTINNPYQKKNPY 120
BLAST of mRNA_Ecto-sp9_F_contig10113.155.1 vs.
Match: Hypothetical (protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A6T7JZ88_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.810e-18 Identity = 42/120 (35.00%), Postives = 76/120 (63.33%), Query Frame = 2
Query: 2 VFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPW 361
VFY+ ++T + +LTN+ + + ++E GG+VRSV NHG+R LP+RF +K+ KE +R++ GR+ S +YDASP ++++ L +++V+R + +P K+ +E+ NP+
Sbjct: 2 VFYECVLTAKNTAPFMNLTNLMKTVSLKVVERGGIVRSVQNHGIRDLPHRFKAKYPDKE-GNRYYKKGRFISVFYDASPHAREEVQAILDLDEEVLRNTHLKPRNKVTYANIVNEKKNPY 120
BLAST of mRNA_Ecto-sp9_F_contig10113.155.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TLA5_THAOC) HSP 1 Score: 86.3 bits (212), Expect = 2.080e-18 Identity = 42/120 (35.00%), Postives = 76/120 (63.33%), Query Frame = 2
Query: 2 VFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPW 361
VFY+ ++T + T+ LT++ + + I+E GG+VRS+ NHG+R LP+RF SK+ +E +R++ GR+ S +YD++P AK++E L ++++R + R S + + + E NP+
Sbjct: 40 VFYECLMTAKNTTHYNLLTSLMKEVSHKIVENGGIVRSIQNHGIRQLPHRFKSKYADRE-GNRYYEKGRFISVFYDSNPVTAKQVETILNLNEEILRNTHLRASNRFNEVNDLLESRNPY 158
BLAST of mRNA_Ecto-sp9_F_contig10113.155.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2MAY0_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 4.990e-17 Identity = 40/123 (32.52%), Postives = 75/123 (60.98%), Query Frame = 2
Query: 2 VFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPWDME 370
VFY+ ++T + + +LT + + + I+ GG+VRS+ NHGVR LP+RF +K+ +E +R++ GR+ S +YDASP + +++E L +++++R + + K + + E NP+ E
Sbjct: 2 VFYECLMTAKNTAHYNNLTALMKDISLKIVNNGGIVRSIQNHGVRQLPHRFRAKYADRE-GNRYYEKGRFVSVFYDASPGIMRQVEGILNLDEQILRNTHLKGRNKFMDVNNVREAKNPYIQE 123
BLAST of mRNA_Ecto-sp9_F_contig10113.155.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z259_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 2.930e-16 Identity = 37/92 (40.22%), Postives = 60/92 (65.22%), Query Frame = 2
Query: 86 ILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPW 361
++E GG++RS+ NHG+R P+RF +K+ R++ GR+ S YYDA+PA KK+E L D+V+RV+ + +K+D I H++ NP+
Sbjct: 8 VVENGGIIRSIQNHGLRTFPHRFKAKYPDYLTQQRYYEQGRFISVYYDANPATLKKVENILNMNDQVLRVTHLKSRSKLDWINYRHDK-NPY 98 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10113.155.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10113.155.1 >prot_Ecto-sp9_F_contig10113.155.1 ID=prot_Ecto-sp9_F_contig10113.155.1|Name=mRNA_Ecto-sp9_F_contig10113.155.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=150bp GFLPADRHSPAADEPHRPHQHLPPGGRGNPGGGRGREVCGQPRREGAALPback to top mRNA from alignment at Ecto-sp9_F_contig10113:1004..3308- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10113.155.1 ID=mRNA_Ecto-sp9_F_contig10113.155.1|Name=mRNA_Ecto-sp9_F_contig10113.155.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2305bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10113:1004..3308- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10113:1004..3308- >mRNA_Ecto-sp9_F_contig10113.155.1 ID=mRNA_Ecto-sp9_F_contig10113.155.1|Name=mRNA_Ecto-sp9_F_contig10113.155.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=900bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10113:1004..3308- (Ectocarpus species9 EcSCA_722f female)back to top |