mRNA_Ecto-sp9_F_contig10110.151.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10110.151.1 vs.
Match: Cyclic (nucleotide-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU8_ECTSI) HSP 1 Score: 356 bits (913), Expect = 8.030e-123 Identity = 183/184 (99.46%), Postives = 183/184 (99.46%), Query Frame = 1
Query: 1 LMFIFELASNFISAHEDVDILELLHEGPVAYQLALEKNRQLQDARSTLSQQLPVFPELARSLKTRVAAKYMLVQHREVVHELFHHGHINDRESEGLIAENNAARVKLEYHPAADQIPDRFTLLKNVPFLRFLTDEEKAEIINNEKACQEEFYGSNVVLMNAKMSFARGARRQGWFNVVRGAVRQ 552
LMFIFELASNFISAHEDVDILELLHEGPVAYQLALEKNRQLQDARSTLSQQLPVFPELARSLKTRVAAKYMLVQH EVVHELFHHGHINDRESEGLIAENNAARVKLEYHPAADQIPDRFTLLKNVPFLRFLTDEEKAEIINNEKACQEEFYGSNVVLMNAKMSFARGARRQGWFNVVRGAVRQ
Sbjct: 5 LMFIFELASNFISAHEDVDILELLHEGPVAYQLALEKNRQLQDARSTLSQQLPVFPELARSLKTRVAAKYMLVQHPEVVHELFHHGHINDRESEGLIAENNAARVKLEYHPAADQIPDRFTLLKNVPFLRFLTDEEKAEIINNEKACQEEFYGSNVVLMNAKMSFARGARRQGWFNVVRGAVRQ 188
BLAST of mRNA_Ecto-sp9_F_contig10110.151.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F4_9PHAE) HSP 1 Score: 357 bits (915), Expect = 7.310e-116 Identity = 183/184 (99.46%), Postives = 184/184 (100.00%), Query Frame = 1
Query: 1 LMFIFELASNFISAHEDVDILELLHEGPVAYQLALEKNRQLQDARSTLSQQLPVFPELARSLKTRVAAKYMLVQHREVVHELFHHGHINDRESEGLIAENNAARVKLEYHPAADQIPDRFTLLKNVPFLRFLTDEEKAEIINNEKACQEEFYGSNVVLMNAKMSFARGARRQGWFNVVRGAVRQ 552
LMFIFELASNFISAHEDVDILELLHEGPVAYQLALEKNRQLQDARSTLSQQLPVFPELARSLKTRVAAKYMLVQHREVVHELFHHGHINDRESEGLIAENNAARVKLEYHPAADQIPDRFTLLKNVPFLRFLTDEEKAEIINNEKACQEEFYGSNVVLMNAKMSFARGARRQGWF+VVRGAVRQ
Sbjct: 649 LMFIFELASNFISAHEDVDILELLHEGPVAYQLALEKNRQLQDARSTLSQQLPVFPELARSLKTRVAAKYMLVQHREVVHELFHHGHINDRESEGLIAENNAARVKLEYHPAADQIPDRFTLLKNVPFLRFLTDEEKAEIINNEKACQEEFYGSNVVLMNAKMSFARGARRQGWFSVVRGAVRQ 832
BLAST of mRNA_Ecto-sp9_F_contig10110.151.1 vs.
Match: Sodium/hydrogen (exchanger family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH43_9STRA) HSP 1 Score: 213 bits (543), Expect = 9.870e-61 Identity = 109/173 (63.01%), Postives = 132/173 (76.30%), Query Frame = 1
Query: 1 LMFIFELASNFISAHEDVDILELLHEGPVAYQLALEKNRQLQDARSTLSQQLPVFPELARSLKTRVAAKYMLVQHREVVHELFHHGHINDRESEGLIAENNAARVKLEYHPAADQIPDRFTLLKNVPFLRFLTDEEKAEIINNEKACQEEFYGSNVVLMNAKMSFARGARRQG 519
L FIFELASNFI+AHEDVDIL+++ EGPVAYQLA EK +QL++AR TL QLPVFPELARSLKT+VAA+Y+LVQHR +V E + HGHINDRE L+ NN +RVKL+YHP D IPDR LLK VPFLRFLTD ++ +I N A EEF GS++ LM + + G +R G
Sbjct: 958 LAFIFELASNFIAAHEDVDILQIIKEGPVAYQLAFEKTKQLREARDTLVAQLPVFPELARSLKTQVAARYILVQHRGMVEESYRHGHINDREYARLLHSNNVSRVKLDYHPHTDHIPDRSQLLKGVPFLRFLTDADRETVIRNSAAVVEEFRGSHITLMRERSADVTGHKRSG 1130
BLAST of mRNA_Ecto-sp9_F_contig10110.151.1 vs.
Match: Sodium/hydrogen (exchanger family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G372_ECTSI) HSP 1 Score: 163 bits (412), Expect = 4.050e-43 Identity = 85/185 (45.95%), Postives = 122/185 (65.95%), Query Frame = 1
Query: 1 LMFIFELASNFISAHEDVDILELLHEGPVAYQLALEKNRQLQDARSTLSQQLPVFPELARSLKTRVAAKYMLVQHREVVHELFHHGHINDRESEGLIAENNAARVKLEYHPAADQIPDRFTLLKNVPFLRFLTDEEKAEIINNEKACQEEFYGSNVVLMNAKMSFARGARRQG---WFNVVRGAV 546
L F+FELASNFI+AHED+DILELL EG A QLA E +QL DA TL QLP FPE VAA+++L +HRE VHE+F G +N++E+E + N ++KL+ HP A+ +P R +L VPFL+ L++++ +++N+++ CQEE +GSNVVL+ +G W+ +VRG+V
Sbjct: 918 LAFVFELASNFIAAHEDIDILELLPEGDAANQLARENLKQLDDASGTLGHQLPAFPE--------VAARFLLAKHREFVHEMFLDGLLNEKEAETTLHVNTEFKIKLDDHPYAEHLPPRAVMLAKVPFLKSLSEDQVVQVVNDDRFCQEELHGSNVVLLRQSERVKHSGHNKGTTGWYYIVRGSV 1094
BLAST of mRNA_Ecto-sp9_F_contig10110.151.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTA9_HETAK) HSP 1 Score: 153 bits (386), Expect = 5.930e-41 Identity = 82/192 (42.71%), Postives = 124/192 (64.58%), Query Frame = 1
Query: 10 IFELASNFISAHEDVDILELLHEGPVAYQLALEKNRQLQDARSTLSQQLPVFPELARSLKTRVAAKYMLVQHREVVHELFHHGHINDRESEGLIAENNAARVKLEYHPAADQIPDRFTLLKNVPFLRFLTDEEKAEIINNEKACQEEFYGSNVVLMNAKMSFARGAR-----------RQGWFNVVRGAVRQ 552
+FELA+N+I A ED+D+L+++ GPVA +LALE Q++ AR L LPVF E+AR++KTRV A+Y+LV+ RE+V E +H GH+N++E+E L+ E + AR+KL+YHP D+ R L+ ++PFLR L E+ ++ +EEF+ VL+ M+ A R + G++ VVRG+VRQ
Sbjct: 30 LFELAANYIKAAEDIDVLDVVQAGPVANELALESLVQVRGAREALRTHLPVFAEIARAMKTRVTARYLLVKQRELVEEFYHTGHVNEKETEQLLHEIDRARIKLDYHPVTDKFLPRLALIGHLPFLRRLRPAERERFLDQADFVEEEFHAQGEVLIKEGMTKALQGRPPPAHGDMSGLKAGFYVVVRGSVRQ 221
BLAST of mRNA_Ecto-sp9_F_contig10110.151.1 vs.
Match: Na_H_Exchanger (domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y140_AURAN) HSP 1 Score: 98.2 bits (243), Expect = 1.750e-20 Identity = 56/132 (42.42%), Postives = 83/132 (62.88%), Query Frame = 1
Query: 7 FIFELASNFISAHEDVDIL----ELLHEGPVAYQLALEKNRQLQDARSTLSQQLPVFPELARSLKTRVAAKYMLVQHREVVHELFHHGHINDRESEGLIAENNAARVKLEYHPAADQIPDRFTLLKNVPFLR 390
F+FE+A NFI AHEDV+ E++ GPV L E + A++T+++ + VFPE A ++KT+VAA ++LV+ E++ E HGHI +E NAAR+KL HP +Q+P TL+++VPFLR
Sbjct: 588 FVFEVAYNFIHAHEDVEHALAAEEIVDAGPVQEALVEEVAKMQAMAKATIAEYIDVFPESANAIKTQVAASFVLVRQHELMKESREHGHITAKELGECERHINAARIKLSQHPYTEQMPPIKTLVRDVPFLR 719
BLAST of mRNA_Ecto-sp9_F_contig10110.151.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UK40_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 1.940e-12 Identity = 55/199 (27.64%), Postives = 100/199 (50.25%), Query Frame = 1
Query: 1 LMFIFELASNFISAHE--DVDIL--------------ELLHEGPVAYQLALEKNRQLQDARSTLSQQLPVFPELARSLKTRVAAKYMLVQHREVVHELFHHGHINDRESEGLIAENNAARVKLEYHPAADQIPDRFTLLKNVPFLRFLTDEEKAEIINNEKACQEEFYGSNVVLMNAKMSFARGARRQGWFNVVRGAVR 549
L F+ ++ NFI AHE +D+ E + G ++ +E +++ A + ++ Q ++PE+ RS++T++AA+ +L + RE + L++ G ++++E L N VKLE HPAA +P R LL +V FL+ L+ E E+++ K + F ++ G +GW+ + RG R
Sbjct: 780 LEFVLTVSMNFIRAHECARIDLAQAVASAGKDTKEAREFVERGK---KIRMEAAEEMKAAEAWVNDQFDIYPEITRSIRTKMAARVLLREEREEIDRLYNAGLLDNQEHRKLSNSNTTCLVKLENHPAAMGVPRREELLHDVNFLQGLSQELFDEVVSMSK--ERNFRKDEEFIVE-------GTPSKGWYVITRGTCR 966
BLAST of mRNA_Ecto-sp9_F_contig10110.151.1 vs.
Match: Cyclic (nucleotide-binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMP7_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 1.010e-6 Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1
Query: 1 LMFIFELASNFISAHEDVD--ILELLHE-GPVAYQLALEKNRQLQDARSTLSQQLPVFPELARSLKTRVAAKYMLVQHREVVHELFHHGHINDRESEGLIAENNA 306
L F FELA FI +H + + EL + GPV QL E ++ A++ L + +PVFP++ S+KT +AA+YML + R ++ G + RE E I E +A
Sbjct: 48 LAFFFELAVVFIQSHSNAHKKLNELFGKNGPVTRQLEKEVEEEVGKAKAALEEFVPVFPDIINSVKTEMAARYMLNKCRSMLEAAMESGSLEKREFEDAIREVSA 152 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10110.151.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10110.151.1 >prot_Ecto-sp9_F_contig10110.151.1 ID=prot_Ecto-sp9_F_contig10110.151.1|Name=mRNA_Ecto-sp9_F_contig10110.151.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=183bp MFIFELASNFISAHEDVDILELLHEGPVAYQLALEKNRQLQDARSTLSQQback to top mRNA from alignment at Ecto-sp9_F_contig10110:1683..4138+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10110.151.1 ID=mRNA_Ecto-sp9_F_contig10110.151.1|Name=mRNA_Ecto-sp9_F_contig10110.151.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2456bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10110:1683..4138+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10110:1683..4138+ >mRNA_Ecto-sp9_F_contig10110.151.1 ID=mRNA_Ecto-sp9_F_contig10110.151.1|Name=mRNA_Ecto-sp9_F_contig10110.151.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1098bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10110:1683..4138+ (Ectocarpus species9 EcSCA_722f female)back to top |