mRNA_Ecto-sp9_F_contig1011.150.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1011.150.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF2_ECTSI) HSP 1 Score: 561 bits (1445), Expect = 1.960e-193 Identity = 432/500 (86.40%), Postives = 437/500 (87.40%), Query Frame = 1
Query: 1 MDGASRLGRSSEAGGEKNWRTRRGQSESPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGGAGGEPSNRYGDGRWGGHGLGGDVGGEGGRRGGGVGNDHDEGGRGD-----------------DIYDFDATGGSSRLTRSAEAKKRRGKKRESKLAPKAKATLTTEQRVAEILARTRSPAAIATAPTASGGGGGDRGGSEDRPWTGGEGTGTFSDFAKSLRDLQQTGELDLSSEGAAGKSGLGSSESPRPNLRPXXXXXXXXXXXXXGDDESSGPLDLSGSLVIGEADMESRRRLLRPPYGGRITDSPVTSSGLWDVPTAAPSLAELEYQLRKLSPLRGMAAGASKARGAGGAGHGSRSPALKSRRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GSRGWGVGRGGEMGGGGHGEAEQSPADLSSVVLVSSLSSTPGRRKSGSGRWATXXXXGGVTQTRMGGVDLGVDDLSAAHW 1446
MDGASRLGRSSE GGE+NWRTRRGQSESPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DSGGAGGEP NR+GDGRWGGHGL G VG GG DIYDFDATGGSSRLTRSAEAKKRRGKK+ESKLAPKAKATLTTEQRVAEILARTRSPAAIA APTASGGGG DRGGSEDRPWTGGEGTGTFSDFAKSLRDLQQTGELDLSSEG AGKSGLGSSESPRPNLRPXXXXXXXXXXXX GDDESSGPLDLSGSLVIGEADMES RRLLRPPYGGRITDSPVTSSG WDVPTAAPSLAELEYQLRKLSPLRGMAA ASKARGAG AG GSRSPALKSRRGG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GSRG G+GRGGEMGG HG+AEQSPADLSSVVLVSSLSSTPGRRKSGSGRWA GGVTQTRMGGVDLGVDDLSAAHW
Sbjct: 1 MDGASRLGRSSETGGERNWRTRRGQSESPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----DSGGAGGEPGNRHGDGRWGGHGLDGAVG----------------GGXXXXXXXXXXXXXXXXXXXXDIYDFDATGGSSRLTRSAEAKKRRGKKKESKLAPKAKATLTTEQRVAEILARTRSPAAIAKAPTASGGGGDDRGGSEDRPWTGGEGTGTFSDFAKSLRDLQQTGELDLSSEGVAGKSGLGSSESPRPNLRPXXXXXXXXXXXXDGDDESSGPLDLSGSLVIGEADMESHRRLLRPPYGGRITDSPVTSSGPWDVPTAAPSLAELEYQLRKLSPLRGMAAVASKARGAGSAGRGSRSPALKSRRGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSRGGGIGRGGEMGGARHGDAEQSPADLSSVVLVSSLSSTPGRRKSGSGRWAKGQGQGGVTQTRMGGVDLGVDDLSAAHW 480
BLAST of mRNA_Ecto-sp9_F_contig1011.150.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN35_9PHAE) HSP 1 Score: 218 bits (554), Expect = 7.940e-59 Identity = 138/154 (89.61%), Postives = 143/154 (92.86%), Query Frame = 1
Query: 376 LTRSAEAKKRRGKKRESKLAPKAKATLTTEQRVAEILARTRSPAAIATAPTASGGGGGDRGGSEDRPWTGGEGTGTFSDFAKSLRDLQQTGELDLSSEGAAGKSGLGSSESPRPNLRPXXXXXXXXXXXXXGDDESSGPLDLSGSLVIGEADME 837
LTRSA+AKKRRGKK+ESKLAP+AKATLTTEQRVAEILARTRSPAAIATAPTA DRGGSEDRPWTGGEGTGTFSDFAKSLRDL+QTGELDLSSEGAAG+SG GSSESPRPNLRP XXXXXXXXXXXX ESSGPLDLSGSLVIGEADME
Sbjct: 3 LTRSAKAKKRRGKKKESKLAPEAKATLTTEQRVAEILARTRSPAAIATAPTAGXXXXXDRGGSEDRPWTGGEGTGTFSDFAKSLRDLRQTGELDLSSEGAAGRSGRGSSESPRPNLRPPXXXXXXXXXXXXXXXESSGPLDLSGSLVIGEADME 156 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1011.150.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1011.150.1 >prot_Ecto-sp9_F_contig1011.150.1 ID=prot_Ecto-sp9_F_contig1011.150.1|Name=mRNA_Ecto-sp9_F_contig1011.150.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=545bp MDGASRLGRSSEAGGEKNWRTRRGQSESPSPLSGGSDAGIGGGGGGGGGSback to top mRNA from alignment at Ecto-sp9_F_contig1011:16969..24567+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1011.150.1 ID=mRNA_Ecto-sp9_F_contig1011.150.1|Name=mRNA_Ecto-sp9_F_contig1011.150.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=7599bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1011:16969..24567+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1011:16969..24567+ >mRNA_Ecto-sp9_F_contig1011.150.1 ID=mRNA_Ecto-sp9_F_contig1011.150.1|Name=mRNA_Ecto-sp9_F_contig1011.150.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3270bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1011:16969..24567+ (Ectocarpus species9 EcSCA_722f female)back to top |